Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:55289872-55821182

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51 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acsl5 19 55251884 to 55296628 44744 + protein coding gene acyl-CoA synthetase long-chain family member 5
Zdhhc6 19 55298293 to 55316032 17739 - protein coding gene zinc finger, DHHC domain containing 6
D19Mit55 19 55305015 to 55305156 141 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 55
Tssr159858 19 55311886 to 55311920 34 - TSS region transcription start site region 159858
Cpgi11078 19 55315473 to 55316750 1277 CpG island CpG island 11078
Tssr157082 19 55315625 to 55315636 11 + TSS region transcription start site region 157082
Tssr157083 19 55315673 to 55315677 4 + TSS region transcription start site region 157083
Tssr159859 19 55315904 to 55315907 3 - TSS region transcription start site region 159859
Tssr159860 19 55315980 to 55316038 58 - TSS region transcription start site region 159860
Tssr157084 19 55316278 to 55316305 27 + TSS region transcription start site region 157084
Vti1a 19 55316295 to 55627309 311014 + protein coding gene vesicle transport through interaction with t-SNAREs 1A
Tssr157085 19 55316313 to 55316367 54 + TSS region transcription start site region 157085
Tssr5559 19 55318024 to 55318025 1 + TSS region transcription start site region 5559
Tssr157086 19 55346121 to 55346148 27 + TSS region transcription start site region 157086
D19Mit35 19 55387618 to 55387735 117 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 35
Sluc35 19 55387618 to 59135440 3747822 QTL susceptibility to lung cancer 35
T2dm2 19 55387618 to 55387735 117 QTL type 2 diabetes mellitus 2
Tssr157087 19 55412490 to 55412538 48 + TSS region transcription start site region 157087
Tssr157088 19 55425241 to 55425254 13 + TSS region transcription start site region 157088
Tssr157089 19 55435373 to 55435380 7 + TSS region transcription start site region 157089
D19Mit104 19 55443095 to 55443200 105 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 104
Tssr157090 19 55464774 to 55464787 13 + TSS region transcription start site region 157090
Tssr157091 19 55464789 to 55464816 27 + TSS region transcription start site region 157091
Gm4466 19 55480916 to 55484621 3705 unclassified gene predicted gene 4466
Tssr157092 19 55514244 to 55514255 11 + TSS region transcription start site region 157092
Tssr157093 19 55552808 to 55552815 7 + TSS region transcription start site region 157093
2310066F23Rik 19 55554872 to 55556182 1310 unclassified gene RIKEN cDNA 2310066F23 gene
Cpgi11079 19 55593585 to 55593750 165 CpG island CpG island 11079
Cpgi11080 19 55628044 to 55628388 344 CpG island CpG island 11080
4930552P12Rik 19 55640589 to 55702204 61615 - lincRNA gene RIKEN cDNA 4930552P12 gene
Gm41871 19 55701143 to 55702134 991 + lncRNA gene predicted gene, 41871
Tssr159861 19 55718966 to 55718970 4 - TSS region transcription start site region 159861
Cpgi11081 19 55729821 to 55730109 288 CpG island CpG island 11081
Gm31734 19 55734407 to 55743225 8818 - lncRNA gene predicted gene, 31734
Cpgi11082 19 55741267 to 55741976 709 CpG island CpG island 11082
Tssr157094 19 55741788 to 55741797 9 + TSS region transcription start site region 157094
Tcf7l2 19 55741810 to 55933654 191844 + protein coding gene transcription factor 7 like 2, T cell specific, HMG box
Tssr157095 19 55741810 to 55741842 32 + TSS region transcription start site region 157095
Tssr157096 19 55741908 to 55741919 11 + TSS region transcription start site region 157096
Tssr157097 19 55741924 to 55741935 11 + TSS region transcription start site region 157097
Tssr157098 19 55742056 to 55742066 10 + TSS region transcription start site region 157098
Tssr157099 19 55742280 to 55742303 23 + TSS region transcription start site region 157099
Cpgi11083 19 55742306 to 55744427 2121 CpG island CpG island 11083
Tssr157100 19 55742771 to 55742784 13 + TSS region transcription start site region 157100
Tssr157101 19 55743100 to 55743135 35 + TSS region transcription start site region 157101
Tssr157102 19 55743139 to 55743162 23 + TSS region transcription start site region 157102
Tssr159862 19 55743193 to 55743220 27 - TSS region transcription start site region 159862
Tssr157103 19 55743409 to 55743437 28 + TSS region transcription start site region 157103
Cpgi11084 19 55787505 to 55787686 181 CpG island CpG island 11084
Tssr157104 19 55800905 to 55800909 4 + TSS region transcription start site region 157104
Tssr157105 19 55804368 to 55804372 4 + TSS region transcription start site region 157105