Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5494052-5734053

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105 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr154449 19 5494629 to 5494633 4 + TSS region transcription start site region 154449
Snx32 19 5495278 to 5510489 15211 - protein coding gene sorting nexin 32
1700020D05Rik 19 5502767 to 5503787 1020 - protein coding gene RIKEN cDNA 1700020D05 gene
Cpgi10456 19 5503578 to 5503763 185 CpG island CpG island 10456
Tssr157610 19 5503748 to 5503760 12 - TSS region transcription start site region 157610
Tssr157611 19 5503776 to 5503792 16 - TSS region transcription start site region 157611
Cpgi10457 19 5510414 to 5511114 700 CpG island CpG island 10457
Tssr157612 19 5510446 to 5510465 19 - TSS region transcription start site region 157612
Tssr157613 19 5510467 to 5510518 51 - TSS region transcription start site region 157613
Tssr154450 19 5510730 to 5510760 30 + TSS region transcription start site region 154450
Tssr154451 19 5510908 to 5510922 14 + TSS region transcription start site region 154451
Gm31166 19 5512528 to 5550368 37840 + pseudogene predicted gene, 31166
Tssr157614 19 5512850 to 5512876 26 - TSS region transcription start site region 157614
Cpgi10458 19 5529416 to 5529665 249 CpG island CpG island 10458
Ovol1 19 5549137 to 5560575 11438 - protein coding gene ovo like zinc finger 1
Tssr154452 19 5553364 to 5553369 5 + TSS region transcription start site region 154452
Cpgi10459 19 5559655 to 5561559 1904 CpG island CpG island 10459
Tssr154453 19 5560202 to 5560216 14 + TSS region transcription start site region 154453
Tssr157615 19 5560570 to 5560582 12 - TSS region transcription start site region 157615
Tssr157616 19 5560600 to 5560617 17 - TSS region transcription start site region 157616
1810058N15Rik 19 5561051 to 5561678 627 protein coding gene RIKEN cDNA 1810058N15 gene
Cpgi10460 19 5567073 to 5569061 1988 CpG island CpG island 10460
Tssr154454 19 5568002 to 5568062 60 + TSS region transcription start site region 154454
Tssr154455 19 5568068 to 5568089 21 + TSS region transcription start site region 154455
Ap5b1 19 5568074 to 5571261 3187 + protein coding gene adaptor-related protein complex 5, beta 1 subunit
Tssr154456 19 5568413 to 5568447 34 + TSS region transcription start site region 154456
Tssr5413 19 5569345 to 5569391 46 + TSS region transcription start site region 5413
Cpgi10461 19 5601693 to 5602614 921 CpG island CpG island 10461
Tssr154457 19 5601841 to 5601852 11 + TSS region transcription start site region 154457
Tssr154458 19 5601854 to 5601916 62 + TSS region transcription start site region 154458
Rnaseh2c 19 5601873 to 5602959 1086 + protein coding gene ribonuclease H2, subunit C
Kat5 19 5603017 to 5610094 7077 - protein coding gene K(lysine) acetyltransferase 5
Cpgi10462 19 5609403 to 5610432 1029 CpG island CpG island 10462
Tssr154459 19 5609840 to 5609860 20 + TSS region transcription start site region 154459
Tssr157617 19 5610038 to 5610066 28 - TSS region transcription start site region 157617
Tssr154460 19 5610065 to 5610108 43 + TSS region transcription start site region 154460
Tssr5414 19 5614052 to 5614053 1 - TSS region transcription start site region 5414
Cpgi10463 19 5636862 to 5638536 1674 CpG island CpG island 10463
Tssr157618 19 5637375 to 5637391 16 - TSS region transcription start site region 157618
Tssr154461 19 5637475 to 5637486 11 + TSS region transcription start site region 154461
Rela 19 5637483 to 5648130 10647 + protein coding gene v-rel reticuloendotheliosis viral oncogene homolog A (avian)
Tssr154462 19 5637489 to 5637500 11 + TSS region transcription start site region 154462
Tssr154463 19 5637501 to 5637517 16 + TSS region transcription start site region 154463
Tssr154464 19 5637528 to 5637548 20 + TSS region transcription start site region 154464
Tssr154465 19 5637708 to 5637730 22 + TSS region transcription start site region 154465
Tssr154466 19 5637736 to 5637766 30 + TSS region transcription start site region 154466
Tssr154467 19 5637777 to 5637778 1 + TSS region transcription start site region 154467
Tssr154468 19 5638211 to 5638214 3 + TSS region transcription start site region 154468
Tssr154469 19 5638223 to 5638226 3 + TSS region transcription start site region 154469
Tssr154470 19 5638237 to 5638263 26 + TSS region transcription start site region 154470
Tssr154471 19 5638280 to 5638306 26 + TSS region transcription start site region 154471
Tssr154472 19 5638312 to 5638313 1 + TSS region transcription start site region 154472
Tssr157619 19 5638875 to 5638885 10 - TSS region transcription start site region 157619
Tssr154473 19 5645536 to 5645550 14 + TSS region transcription start site region 154473
Tssr154474 19 5646850 to 5646860 10 + TSS region transcription start site region 154474
Cpgi10464 19 5648794 to 5649081 287 CpG island CpG island 10464
Sipa1 19 5651185 to 5663707 12522 - protein coding gene signal-induced proliferation associated gene 1
Cpgi10465 19 5653988 to 5655453 1465 CpG island CpG island 10465
Tssr157620 19 5654262 to 5654304 42 - TSS region transcription start site region 157620
Tssr157621 19 5658246 to 5658251 5 - TSS region transcription start site region 157621
Cpgi10466 19 5660735 to 5660933 198 CpG island CpG island 10466
Tssr157622 19 5661625 to 5661662 37 - TSS region transcription start site region 157622
Cpgi10467 19 5663403 to 5663837 434 CpG island CpG island 10467
Tssr157623 19 5663635 to 5663670 35 - TSS region transcription start site region 157623
Tssr157624 19 5663674 to 5663694 20 - TSS region transcription start site region 157624
Tssr157625 19 5663701 to 5663710 9 - TSS region transcription start site region 157625
Pcnx3 19 5664635 to 5688908 24273 - protein coding gene pecanex homolog 3
Mir6987 19 5679004 to 5679076 72 - miRNA gene microRNA 6987
Cpgi10468 19 5688045 to 5689083 1038 CpG island CpG island 10468
Tssr157626 19 5688540 to 5688590 50 - TSS region transcription start site region 157626
Tssr157627 19 5688614 to 5688706 92 - TSS region transcription start site region 157627
Tssr154475 19 5688723 to 5688770 47 + TSS region transcription start site region 154475
Tssr154476 19 5688778 to 5688797 19 + TSS region transcription start site region 154476
Map3k11 19 5689131 to 5702862 13731 + protein coding gene mitogen-activated protein kinase kinase kinase 11
Cpgi10469 19 5689487 to 5690707 1220 CpG island CpG island 10469
Tssr154477 19 5689745 to 5689823 78 + TSS region transcription start site region 154477
Tssr154478 19 5692852 to 5692874 22 + TSS region transcription start site region 154478
Cpgi10470 19 5695503 to 5696337 834 CpG island CpG island 10470
Tssr154479 19 5700770 to 5700795 25 + TSS region transcription start site region 154479
Kcnk7 19 5704367 to 5707101 2734 + protein coding gene potassium channel, subfamily K, member 7
Tssr154480 19 5704437 to 5704468 31 + TSS region transcription start site region 154480
Ehbp1l1 19 5707376 to 5726317 18941 - protein coding gene EH domain binding protein 1-like 1
Cpgi10471 19 5715883 to 5716530 647 CpG island CpG island 10471
Tssr157628 19 5719306 to 5719315 9 - TSS region transcription start site region 157628
Tssr157629 19 5720297 to 5720311 14 - TSS region transcription start site region 157629
Tssr157630 19 5720681 to 5720690 9 - TSS region transcription start site region 157630
Tssr157631 19 5720695 to 5720725 30 - TSS region transcription start site region 157631
Tssr157632 19 5721811 to 5721853 42 - TSS region transcription start site region 157632
Tssr154481 19 5724812 to 5724829 17 + TSS region transcription start site region 154481
Tssr154482 19 5724874 to 5724886 12 + TSS region transcription start site region 154482
Cpgi10472 19 5725953 to 5726559 606 CpG island CpG island 10472
Tssr157633 19 5726214 to 5726227 13 - TSS region transcription start site region 157633
Tssr157634 19 5726240 to 5726287 47 - TSS region transcription start site region 157634
Tssr154483 19 5727170 to 5727194 24 + TSS region transcription start site region 154483
Gm16538 19 5727206 to 5731627 4421 + antisense lncRNA gene predicted gene 16538
Tssr154484 19 5727211 to 5727225 14 + TSS region transcription start site region 154484
Fam89b 19 5728087 to 5729653 1566 - protein coding gene family with sequence similarity 89, member B
Cpgi10473 19 5729070 to 5730020 950 CpG island CpG island 10473
Tssr157635 19 5729357 to 5729416 59 - TSS region transcription start site region 157635
Tssr157636 19 5729512 to 5729530 18 - TSS region transcription start site region 157636
Tssr157637 19 5729618 to 5729700 82 - TSS region transcription start site region 157637
Sssca1 19 5730306 to 5731732 1426 - protein coding gene Sjogren syndrome/scleroderma autoantigen 1
Cpgi10474 19 5731141 to 5731938 797 CpG island CpG island 10474
Tssr157638 19 5731489 to 5731503 14 - TSS region transcription start site region 157638
Tssr157639 19 5731697 to 5731733 36 - TSS region transcription start site region 157639