Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:54873850-55325086

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70 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acsns1 19 47909441 to 55038113 7128672 QTL Angiostrongylus costaricensis nematode susceptibility 1
Chldq9 19 54894550 to 54894671 121 QTL cholesterol and HDL QTL 9
D19Mit1 19 54894550 to 54894671 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 1
D19Mit34 19 55037939 to 55038113 174 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 34
Gpam 19 55069734 to 55099451 29717 - protein coding gene glycerol-3-phosphate acyltransferase, mitochondrial
Tssr159840 19 55076211 to 55076215 4 - TSS region transcription start site region 159840
Tssr159841 19 55095724 to 55095764 40 - TSS region transcription start site region 159841
Tssr159842 19 55096741 to 55096754 13 - TSS region transcription start site region 159842
Tssr159843 19 55096884 to 55096888 4 - TSS region transcription start site region 159843
Cpgi11074 19 55098850 to 55100086 1236 CpG island CpG island 11074
Tssr159844 19 55099417 to 55099492 75 - TSS region transcription start site region 159844
Gm31356 19 55099543 to 55118931 19388 + lncRNA gene predicted gene, 31356
Tssr159845 19 55103030 to 55103064 34 - TSS region transcription start site region 159845
Tssr159846 19 55103070 to 55103089 19 - TSS region transcription start site region 159846
Tssr159847 19 55103092 to 55103099 7 - TSS region transcription start site region 159847
Tssr159848 19 55103125 to 55103146 21 - TSS region transcription start site region 159848
Tssr159849 19 55103341 to 55103349 8 - TSS region transcription start site region 159849
Tssr159850 19 55114631 to 55114651 20 - TSS region transcription start site region 159850
Tssr159851 19 55117001 to 55117014 13 - TSS region transcription start site region 159851
Tssr159852 19 55119810 to 55119815 5 - TSS region transcription start site region 159852
Tssr159853 19 55127166 to 55127179 13 - TSS region transcription start site region 159853
Tssr159854 19 55127180 to 55127243 63 - TSS region transcription start site region 159854
Tssr159855 19 55127247 to 55127257 10 - TSS region transcription start site region 159855
Gm31418 19 55127314 to 55140840 13526 + lncRNA gene predicted gene, 31418
Gm10755 19 55132641 to 55134831 2190 unclassified gene predicted gene 10755
Tssr157063 19 55180716 to 55180733 17 + TSS region transcription start site region 157063
Tectb 19 55180733 to 55196313 15580 + protein coding gene tectorin beta
Tssr157064 19 55180799 to 55180809 10 + TSS region transcription start site region 157064
Tssr157065 19 55181883 to 55181894 11 + TSS region transcription start site region 157065
Tssr5555 19 55183654 to 55183685 31 + TSS region transcription start site region 5555
Tssr5556 19 55183788 to 55183800 12 - TSS region transcription start site region 5556
Mir6715 19 55192678 to 55192734 56 + miRNA gene microRNA 6715
Tssr159856 19 55195076 to 55195087 11 - TSS region transcription start site region 159856
Tssr157066 19 55195879 to 55195904 25 + TSS region transcription start site region 157066
Tssr5557 19 55196301 to 55196315 14 - TSS region transcription start site region 5557
Gucy2g 19 55198297 to 55241236 42939 - protein coding gene guanylate cyclase 2g
Cpgi11075 19 55207918 to 55208194 276 CpG island CpG island 11075
Tssr159857 19 55217566 to 55217577 11 - TSS region transcription start site region 159857
Cpgi11076 19 55218392 to 55218657 265 CpG island CpG island 11076
Tssr157067 19 55219709 to 55219718 9 + TSS region transcription start site region 157067
Tssr5558 19 55251834 to 55251843 9 + TSS region transcription start site region 5558
Acsl5 19 55251884 to 55296628 44744 + protein coding gene acyl-CoA synthetase long-chain family member 5
Tssr157068 19 55251898 to 55251903 5 + TSS region transcription start site region 157068
Tssr157069 19 55251925 to 55251944 19 + TSS region transcription start site region 157069
Tssr157070 19 55251952 to 55251963 11 + TSS region transcription start site region 157070
Tssr157071 19 55253641 to 55253678 37 + TSS region transcription start site region 157071
Tssr157072 19 55253693 to 55253726 33 + TSS region transcription start site region 157072
Tssr157073 19 55253900 to 55253950 50 + TSS region transcription start site region 157073
Tssr157074 19 55253966 to 55253977 11 + TSS region transcription start site region 157074
Tssr157075 19 55253981 to 55253992 11 + TSS region transcription start site region 157075
Cpgi11077 19 55254015 to 55254234 219 CpG island CpG island 11077
Gm31595 19 55262382 to 55274479 12097 - lncRNA gene predicted gene, 31595
Tssr157076 19 55264466 to 55264506 40 + TSS region transcription start site region 157076
Tssr157077 19 55266607 to 55266638 31 + TSS region transcription start site region 157077
Tssr157078 19 55284246 to 55284261 15 + TSS region transcription start site region 157078
Tssr157079 19 55284325 to 55284347 22 + TSS region transcription start site region 157079
Tssr157080 19 55285970 to 55285992 22 + TSS region transcription start site region 157080
Tssr157081 19 55286409 to 55286418 9 + TSS region transcription start site region 157081
Zdhhc6 19 55298293 to 55316032 17739 - protein coding gene zinc finger, DHHC domain containing 6
D19Mit55 19 55305015 to 55305156 141 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 55
Tssr159858 19 55311886 to 55311920 34 - TSS region transcription start site region 159858
Cpgi11078 19 55315473 to 55316750 1277 CpG island CpG island 11078
Tssr157082 19 55315625 to 55315636 11 + TSS region transcription start site region 157082
Tssr157083 19 55315673 to 55315677 4 + TSS region transcription start site region 157083
Tssr159859 19 55315904 to 55315907 3 - TSS region transcription start site region 159859
Tssr159860 19 55315980 to 55316038 58 - TSS region transcription start site region 159860
Tssr157084 19 55316278 to 55316305 27 + TSS region transcription start site region 157084
Vti1a 19 55316295 to 55627309 311014 + protein coding gene vesicle transport through interaction with t-SNAREs 1A
Tssr157085 19 55316313 to 55316367 54 + TSS region transcription start site region 157085
Tssr5559 19 55318024 to 55318025 1 + TSS region transcription start site region 5559