Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:54636834-55866843

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115 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acsns1 19 47909441 to 55038113 7128672 QTL Angiostrongylus costaricensis nematode susceptibility 1
Tssr5554 19 54728346 to 54728351 5 + TSS region transcription start site region 5554
Gm41867 19 54758648 to 54760955 2307 - lncRNA gene predicted gene, 41867
D19Mit1 19 54894550 to 54894671 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 1
Chldq9 19 54894550 to 54894671 121 QTL cholesterol and HDL QTL 9
D19Mit34 19 55037939 to 55038113 174 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 34
Gpam 19 55069734 to 55099451 29717 - protein coding gene glycerol-3-phosphate acyltransferase, mitochondrial
Tssr159840 19 55076211 to 55076215 4 - TSS region transcription start site region 159840
Tssr159841 19 55095724 to 55095764 40 - TSS region transcription start site region 159841
Tssr159842 19 55096741 to 55096754 13 - TSS region transcription start site region 159842
Tssr159843 19 55096884 to 55096888 4 - TSS region transcription start site region 159843
Cpgi11074 19 55098850 to 55100086 1236 CpG island CpG island 11074
Tssr159844 19 55099417 to 55099492 75 - TSS region transcription start site region 159844
Gm31356 19 55099543 to 55118931 19388 + lncRNA gene predicted gene, 31356
Tssr159845 19 55103030 to 55103064 34 - TSS region transcription start site region 159845
Tssr159846 19 55103070 to 55103089 19 - TSS region transcription start site region 159846
Tssr159847 19 55103092 to 55103099 7 - TSS region transcription start site region 159847
Tssr159848 19 55103125 to 55103146 21 - TSS region transcription start site region 159848
Tssr159849 19 55103341 to 55103349 8 - TSS region transcription start site region 159849
Tssr159850 19 55114631 to 55114651 20 - TSS region transcription start site region 159850
Tssr159851 19 55117001 to 55117014 13 - TSS region transcription start site region 159851
Tssr159852 19 55119810 to 55119815 5 - TSS region transcription start site region 159852
Tssr159853 19 55127166 to 55127179 13 - TSS region transcription start site region 159853
Tssr159854 19 55127180 to 55127243 63 - TSS region transcription start site region 159854
Tssr159855 19 55127247 to 55127257 10 - TSS region transcription start site region 159855
Gm31418 19 55127314 to 55140840 13526 + lncRNA gene predicted gene, 31418
Gm10755 19 55132641 to 55134831 2190 unclassified gene predicted gene 10755
Tssr157063 19 55180716 to 55180733 17 + TSS region transcription start site region 157063
Tectb 19 55180733 to 55196313 15580 + protein coding gene tectorin beta
Tssr157064 19 55180799 to 55180809 10 + TSS region transcription start site region 157064
Tssr157065 19 55181883 to 55181894 11 + TSS region transcription start site region 157065
Tssr5555 19 55183654 to 55183685 31 + TSS region transcription start site region 5555
Tssr5556 19 55183788 to 55183800 12 - TSS region transcription start site region 5556
Mir6715 19 55192678 to 55192734 56 + miRNA gene microRNA 6715
Tssr159856 19 55195076 to 55195087 11 - TSS region transcription start site region 159856
Tssr157066 19 55195879 to 55195904 25 + TSS region transcription start site region 157066
Tssr5557 19 55196301 to 55196315 14 - TSS region transcription start site region 5557
Gucy2g 19 55198297 to 55241236 42939 - protein coding gene guanylate cyclase 2g
Cpgi11075 19 55207918 to 55208194 276 CpG island CpG island 11075
Tssr159857 19 55217566 to 55217577 11 - TSS region transcription start site region 159857
Cpgi11076 19 55218392 to 55218657 265 CpG island CpG island 11076
Tssr157067 19 55219709 to 55219718 9 + TSS region transcription start site region 157067
Tssr5558 19 55251834 to 55251843 9 + TSS region transcription start site region 5558
Acsl5 19 55251884 to 55296628 44744 + protein coding gene acyl-CoA synthetase long-chain family member 5
Tssr157068 19 55251898 to 55251903 5 + TSS region transcription start site region 157068
Tssr157069 19 55251925 to 55251944 19 + TSS region transcription start site region 157069
Tssr157070 19 55251952 to 55251963 11 + TSS region transcription start site region 157070
Tssr157071 19 55253641 to 55253678 37 + TSS region transcription start site region 157071
Tssr157072 19 55253693 to 55253726 33 + TSS region transcription start site region 157072
Tssr157073 19 55253900 to 55253950 50 + TSS region transcription start site region 157073
Tssr157074 19 55253966 to 55253977 11 + TSS region transcription start site region 157074
Tssr157075 19 55253981 to 55253992 11 + TSS region transcription start site region 157075
Cpgi11077 19 55254015 to 55254234 219 CpG island CpG island 11077
Gm31595 19 55262382 to 55274479 12097 - lncRNA gene predicted gene, 31595
Tssr157076 19 55264466 to 55264506 40 + TSS region transcription start site region 157076
Tssr157077 19 55266607 to 55266638 31 + TSS region transcription start site region 157077
Tssr157078 19 55284246 to 55284261 15 + TSS region transcription start site region 157078
Tssr157079 19 55284325 to 55284347 22 + TSS region transcription start site region 157079
Tssr157080 19 55285970 to 55285992 22 + TSS region transcription start site region 157080
Tssr157081 19 55286409 to 55286418 9 + TSS region transcription start site region 157081
Zdhhc6 19 55298293 to 55316032 17739 - protein coding gene zinc finger, DHHC domain containing 6
D19Mit55 19 55305015 to 55305156 141 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 55
Tssr159858 19 55311886 to 55311920 34 - TSS region transcription start site region 159858
Cpgi11078 19 55315473 to 55316750 1277 CpG island CpG island 11078
Tssr157082 19 55315625 to 55315636 11 + TSS region transcription start site region 157082
Tssr157083 19 55315673 to 55315677 4 + TSS region transcription start site region 157083
Tssr159859 19 55315904 to 55315907 3 - TSS region transcription start site region 159859
Tssr159860 19 55315980 to 55316038 58 - TSS region transcription start site region 159860
Tssr157084 19 55316278 to 55316305 27 + TSS region transcription start site region 157084
Vti1a 19 55316295 to 55627309 311014 + protein coding gene vesicle transport through interaction with t-SNAREs 1A
Tssr157085 19 55316313 to 55316367 54 + TSS region transcription start site region 157085
Tssr5559 19 55318024 to 55318025 1 + TSS region transcription start site region 5559
Tssr157086 19 55346121 to 55346148 27 + TSS region transcription start site region 157086
Sluc35 19 55387618 to 59135440 3747822 QTL susceptibility to lung cancer 35
T2dm2 19 55387618 to 55387735 117 QTL type 2 diabetes mellitus 2
D19Mit35 19 55387618 to 55387735 117 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 35
Tssr157087 19 55412490 to 55412538 48 + TSS region transcription start site region 157087
Tssr157088 19 55425241 to 55425254 13 + TSS region transcription start site region 157088
Tssr157089 19 55435373 to 55435380 7 + TSS region transcription start site region 157089
D19Mit104 19 55443095 to 55443200 105 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 104
Tssr157090 19 55464774 to 55464787 13 + TSS region transcription start site region 157090
Tssr157091 19 55464789 to 55464816 27 + TSS region transcription start site region 157091
Gm4466 19 55480916 to 55484621 3705 unclassified gene predicted gene 4466
Tssr157092 19 55514244 to 55514255 11 + TSS region transcription start site region 157092
Tssr157093 19 55552808 to 55552815 7 + TSS region transcription start site region 157093
2310066F23Rik 19 55554872 to 55556182 1310 unclassified gene RIKEN cDNA 2310066F23 gene
Cpgi11079 19 55593585 to 55593750 165 CpG island CpG island 11079
Cpgi11080 19 55628044 to 55628388 344 CpG island CpG island 11080
4930552P12Rik 19 55640589 to 55702204 61615 - lincRNA gene RIKEN cDNA 4930552P12 gene
Gm41871 19 55701143 to 55702134 991 + lncRNA gene predicted gene, 41871
Tssr159861 19 55718966 to 55718970 4 - TSS region transcription start site region 159861
Cpgi11081 19 55729821 to 55730109 288 CpG island CpG island 11081
Gm31734 19 55734407 to 55743225 8818 - lncRNA gene predicted gene, 31734
Cpgi11082 19 55741267 to 55741976 709 CpG island CpG island 11082
Tssr157094 19 55741788 to 55741797 9 + TSS region transcription start site region 157094
Tssr157095 19 55741810 to 55741842 32 + TSS region transcription start site region 157095
Tcf7l2 19 55741810 to 55933654 191844 + protein coding gene transcription factor 7 like 2, T cell specific, HMG box
Tssr157096 19 55741908 to 55741919 11 + TSS region transcription start site region 157096
Tssr157097 19 55741924 to 55741935 11 + TSS region transcription start site region 157097
Tssr157098 19 55742056 to 55742066 10 + TSS region transcription start site region 157098
Tssr157099 19 55742280 to 55742303 23 + TSS region transcription start site region 157099
Cpgi11083 19 55742306 to 55744427 2121 CpG island CpG island 11083
Tssr157100 19 55742771 to 55742784 13 + TSS region transcription start site region 157100
Tssr157101 19 55743100 to 55743135 35 + TSS region transcription start site region 157101
Tssr157102 19 55743139 to 55743162 23 + TSS region transcription start site region 157102
Tssr159862 19 55743193 to 55743220 27 - TSS region transcription start site region 159862
Tssr157103 19 55743409 to 55743437 28 + TSS region transcription start site region 157103
Cpgi11084 19 55787505 to 55787686 181 CpG island CpG island 11084
Tssr157104 19 55800905 to 55800909 4 + TSS region transcription start site region 157104
Tssr157105 19 55804368 to 55804372 4 + TSS region transcription start site region 157105
Tssr157106 19 55832746 to 55832757 11 + TSS region transcription start site region 157106
Tssr157107 19 55832874 to 55832888 14 + TSS region transcription start site region 157107
Tssr157108 19 55837828 to 55837831 3 + TSS region transcription start site region 157108
Ppnr 19 55841672 to 55845897 4225 + sense intronic lncRNA gene per-pentamer repeat gene
Tssr157109 19 55845946 to 55845973 27 + TSS region transcription start site region 157109