Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:53843808-53963827

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38 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q14 19 22335962 to 53923073 31587111 QTL weight 3 weeks QTL 14
Rbm20 19 53677306 to 53867080 189774 + protein coding gene RNA binding motif protein 20
Tssr157035 19 53852914 to 53852923 9 + TSS region transcription start site region 157035
Gm41863 19 53855298 to 53860220 4922 - lncRNA gene predicted gene, 41863
Tssr157036 19 53863616 to 53863626 10 + TSS region transcription start site region 157036
Gm30990 19 53871785 to 53903185 31400 - lncRNA gene predicted gene, 30990
Tssr5551 19 53874818 to 53874825 7 - TSS region transcription start site region 5551
Tssr157037 19 53891258 to 53891264 6 + TSS region transcription start site region 157037
Pdcd4 19 53892231 to 53929861 37630 + protein coding gene programmed cell death 4
Tssr157038 19 53893807 to 53893826 19 + TSS region transcription start site region 157038
Cpgi11069 19 53902769 to 53904205 1436 CpG island CpG island 11069
Tssr157039 19 53903234 to 53903277 43 + TSS region transcription start site region 157039
Tssr5552 19 53903345 to 53903366 21 + TSS region transcription start site region 5552
Tssr157040 19 53903384 to 53903403 19 + TSS region transcription start site region 157040
Tssr157041 19 53903808 to 53903827 19 + TSS region transcription start site region 157041
2310035P21Rik 19 53903995 to 53904957 962 unclassified gene RIKEN cDNA 2310035P21 gene
Tssr157042 19 53906234 to 53906255 21 + TSS region transcription start site region 157042
Tssr157043 19 53906524 to 53906545 21 + TSS region transcription start site region 157043
Tssr157044 19 53906573 to 53906593 20 + TSS region transcription start site region 157044
Tssr157045 19 53907366 to 53907376 10 + TSS region transcription start site region 157045
D19Mit36 19 53922910 to 53923073 163 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 36
Tssr157046 19 53929260 to 53929276 16 + TSS region transcription start site region 157046
Tssr157047 19 53929280 to 53929291 11 + TSS region transcription start site region 157047
Tssr157048 19 53929371 to 53929385 14 + TSS region transcription start site region 157048
Bbip1 19 53929677 to 53944627 14950 - protein coding gene BBSome interacting protein 1
Cpgi11070 19 53943854 to 53945848 1994 CpG island CpG island 11070
Tssr157049 19 53944063 to 53944096 33 + TSS region transcription start site region 157049
Tssr159836 19 53944165 to 53944226 61 - TSS region transcription start site region 159836
Tssr159837 19 53944233 to 53944255 22 - TSS region transcription start site region 159837
Tssr5553 19 53944259 to 53944264 5 - TSS region transcription start site region 5553
Shoc2 19 53944306 to 54033268 88962 + protein coding gene Shoc2, leucine rich repeat scaffold protein
Tssr159838 19 53944436 to 53944487 51 - TSS region transcription start site region 159838
Tssr159839 19 53944621 to 53944632 11 - TSS region transcription start site region 159839
Tssr157050 19 53944840 to 53944867 27 + TSS region transcription start site region 157050
Tssr157051 19 53944870 to 53944907 37 + TSS region transcription start site region 157051
Tssr157052 19 53945916 to 53945918 2 + TSS region transcription start site region 157052
Tssr157053 19 53950035 to 53950052 17 + TSS region transcription start site region 157053
Tssr157054 19 53950390 to 53950435 45 + TSS region transcription start site region 157054