Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:53645365-53913290

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Smc3 19 53600396 to 53645831 45435 + protein coding gene structural maintenance of chromosomes 3
Tssr157010 19 53660987 to 53661003 16 + TSS region transcription start site region 157010
Gm46653 19 53673178 to 53675863 2685 - lncRNA gene predicted gene, 46653
Cpgi11066 19 53676228 to 53677711 1483 CpG island CpG island 11066
Tssr157011 19 53676373 to 53676416 43 + TSS region transcription start site region 157011
Tssr157012 19 53677286 to 53677291 5 + TSS region transcription start site region 157012
Rbm20 19 53677306 to 53867080 189774 + protein coding gene RNA binding motif protein 20
Tssr157013 19 53677327 to 53677340 13 + TSS region transcription start site region 157013
Tssr157014 19 53677363 to 53677379 16 + TSS region transcription start site region 157014
Tssr157015 19 53677395 to 53677425 30 + TSS region transcription start site region 157015
Tssr157016 19 53700641 to 53700653 12 + TSS region transcription start site region 157016
Tssr157017 19 53700743 to 53700750 7 + TSS region transcription start site region 157017
Tssr157018 19 53700865 to 53700887 22 + TSS region transcription start site region 157018
Cpgi11067 19 53704916 to 53705297 381 CpG island CpG island 11067
Tssr157019 19 53717845 to 53717857 12 + TSS region transcription start site region 157019
Tssr157020 19 53717891 to 53717904 13 + TSS region transcription start site region 157020
Tssr157021 19 53717919 to 53717937 18 + TSS region transcription start site region 157021
Tssr157022 19 53717968 to 53717982 14 + TSS region transcription start site region 157022
Tssr157023 19 53718024 to 53718041 17 + TSS region transcription start site region 157023
Tssr157024 19 53739239 to 53739244 5 + TSS region transcription start site region 157024
Tssr157025 19 53749025 to 53749028 3 + TSS region transcription start site region 157025
Gm30943 19 53754244 to 53758239 3995 + lncRNA gene predicted gene, 30943
D19Mit103 19 53764166 to 53764287 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 103
Tanidd1 19 53764166 to 53764287 121 QTL TallyHo associated non-insulin dependent diabetes mellitus 1
Gm16298 19 53767891 to 53768310 419 - pseudogene predicted gene 16298
Gm30890 19 53770365 to 53788290 17925 - lncRNA gene predicted gene, 30890
Tssr157026 19 53771828 to 53771838 10 + TSS region transcription start site region 157026
Tssr159834 19 53789697 to 53789706 9 - TSS region transcription start site region 159834
Tssr159835 19 53791839 to 53791847 8 - TSS region transcription start site region 159835
Tssr157027 19 53793266 to 53793275 9 + TSS region transcription start site region 157027
Tssr157028 19 53793291 to 53793341 50 + TSS region transcription start site region 157028
Tssr157029 19 53793347 to 53793392 45 + TSS region transcription start site region 157029
Tssr157030 19 53793397 to 53793411 14 + TSS region transcription start site region 157030
Tssr157031 19 53800852 to 53800863 11 + TSS region transcription start site region 157031
Tssr157032 19 53807534 to 53807543 9 + TSS region transcription start site region 157032
Gm16299 19 53819354 to 53825128 5774 - antisense lncRNA gene predicted gene 16299
Tssr157033 19 53821674 to 53821709 35 + TSS region transcription start site region 157033
Tssr157034 19 53832635 to 53832654 19 + TSS region transcription start site region 157034
Cpgi11068 19 53843240 to 53843412 172 CpG island CpG island 11068
Tssr157035 19 53852914 to 53852923 9 + TSS region transcription start site region 157035
Gm41863 19 53855298 to 53860220 4922 - lncRNA gene predicted gene, 41863
Tssr157036 19 53863616 to 53863626 10 + TSS region transcription start site region 157036
Gm30990 19 53871785 to 53903185 31400 - lncRNA gene predicted gene, 30990
Tssr5551 19 53874818 to 53874825 7 - TSS region transcription start site region 5551
Tssr157037 19 53891258 to 53891264 6 + TSS region transcription start site region 157037
Pdcd4 19 53892231 to 53929861 37630 + protein coding gene programmed cell death 4
Tssr157038 19 53893807 to 53893826 19 + TSS region transcription start site region 157038
Cpgi11069 19 53902769 to 53904205 1436 CpG island CpG island 11069
Tssr157039 19 53903234 to 53903277 43 + TSS region transcription start site region 157039
Tssr5552 19 53903345 to 53903366 21 + TSS region transcription start site region 5552
Tssr157040 19 53903384 to 53903403 19 + TSS region transcription start site region 157040
Tssr157041 19 53903808 to 53903827 19 + TSS region transcription start site region 157041
2310035P21Rik 19 53903995 to 53904957 962 unclassified gene RIKEN cDNA 2310035P21 gene
Tssr157042 19 53906234 to 53906255 21 + TSS region transcription start site region 157042
Tssr157043 19 53906524 to 53906545 21 + TSS region transcription start site region 157043
Tssr157044 19 53906573 to 53906593 20 + TSS region transcription start site region 157044
Tssr157045 19 53907366 to 53907376 10 + TSS region transcription start site region 157045