Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:53600381-54440386

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q14 19 22335962 to 53923073 31587111 QTL weight 3 weeks QTL 14
Cpgi11065 19 53599875 to 53601543 1668 CpG island CpG island 11065
Tssr157001 19 53600377 to 53600435 58 + TSS region transcription start site region 157001
Smc3 19 53600396 to 53645831 45435 + protein coding gene structural maintenance of chromosomes 3
Tssr157002 19 53600449 to 53600478 29 + TSS region transcription start site region 157002
Tssr157003 19 53609367 to 53609371 4 + TSS region transcription start site region 157003
Tssr157004 19 53618891 to 53618896 5 + TSS region transcription start site region 157004
Tssr157005 19 53621826 to 53621861 35 + TSS region transcription start site region 157005
Tssr157006 19 53623045 to 53623058 13 + TSS region transcription start site region 157006
Tssr157007 19 53623149 to 53623186 37 + TSS region transcription start site region 157007
Tssr157008 19 53633987 to 53634005 18 + TSS region transcription start site region 157008
Tssr157009 19 53639327 to 53639369 42 + TSS region transcription start site region 157009
Tssr157010 19 53660987 to 53661003 16 + TSS region transcription start site region 157010
Gm46653 19 53673178 to 53675863 2685 - lncRNA gene predicted gene, 46653
Cpgi11066 19 53676228 to 53677711 1483 CpG island CpG island 11066
Tssr157011 19 53676373 to 53676416 43 + TSS region transcription start site region 157011
Tssr157012 19 53677286 to 53677291 5 + TSS region transcription start site region 157012
Rbm20 19 53677306 to 53867080 189774 + protein coding gene RNA binding motif protein 20
Tssr157013 19 53677327 to 53677340 13 + TSS region transcription start site region 157013
Tssr157014 19 53677363 to 53677379 16 + TSS region transcription start site region 157014
Tssr157015 19 53677395 to 53677425 30 + TSS region transcription start site region 157015
Tssr157016 19 53700641 to 53700653 12 + TSS region transcription start site region 157016
Tssr157017 19 53700743 to 53700750 7 + TSS region transcription start site region 157017
Tssr157018 19 53700865 to 53700887 22 + TSS region transcription start site region 157018
Cpgi11067 19 53704916 to 53705297 381 CpG island CpG island 11067
Tssr157019 19 53717845 to 53717857 12 + TSS region transcription start site region 157019
Tssr157020 19 53717891 to 53717904 13 + TSS region transcription start site region 157020
Tssr157021 19 53717919 to 53717937 18 + TSS region transcription start site region 157021
Tssr157022 19 53717968 to 53717982 14 + TSS region transcription start site region 157022
Tssr157023 19 53718024 to 53718041 17 + TSS region transcription start site region 157023
Tssr157024 19 53739239 to 53739244 5 + TSS region transcription start site region 157024
Tssr157025 19 53749025 to 53749028 3 + TSS region transcription start site region 157025
Gm30943 19 53754244 to 53758239 3995 + lncRNA gene predicted gene, 30943
Tanidd1 19 53764166 to 53764287 121 QTL TallyHo associated non-insulin dependent diabetes mellitus 1
D19Mit103 19 53764166 to 53764287 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 103
Gm16298 19 53767891 to 53768310 419 - pseudogene predicted gene 16298
Gm30890 19 53770365 to 53788290 17925 - lncRNA gene predicted gene, 30890
Tssr157026 19 53771828 to 53771838 10 + TSS region transcription start site region 157026
Tssr159834 19 53789697 to 53789706 9 - TSS region transcription start site region 159834
Tssr159835 19 53791839 to 53791847 8 - TSS region transcription start site region 159835
Tssr157027 19 53793266 to 53793275 9 + TSS region transcription start site region 157027
Tssr157028 19 53793291 to 53793341 50 + TSS region transcription start site region 157028
Tssr157029 19 53793347 to 53793392 45 + TSS region transcription start site region 157029
Tssr157030 19 53793397 to 53793411 14 + TSS region transcription start site region 157030
Tssr157031 19 53800852 to 53800863 11 + TSS region transcription start site region 157031
Tssr157032 19 53807534 to 53807543 9 + TSS region transcription start site region 157032
Gm16299 19 53819354 to 53825128 5774 - antisense lncRNA gene predicted gene 16299
Tssr157033 19 53821674 to 53821709 35 + TSS region transcription start site region 157033
Tssr157034 19 53832635 to 53832654 19 + TSS region transcription start site region 157034
Cpgi11068 19 53843240 to 53843412 172 CpG island CpG island 11068
Tssr157035 19 53852914 to 53852923 9 + TSS region transcription start site region 157035
Gm41863 19 53855298 to 53860220 4922 - lncRNA gene predicted gene, 41863
Tssr157036 19 53863616 to 53863626 10 + TSS region transcription start site region 157036
Gm30990 19 53871785 to 53903185 31400 - lncRNA gene predicted gene, 30990
Tssr5551 19 53874818 to 53874825 7 - TSS region transcription start site region 5551
Tssr157037 19 53891258 to 53891264 6 + TSS region transcription start site region 157037
Pdcd4 19 53892231 to 53929861 37630 + protein coding gene programmed cell death 4
Tssr157038 19 53893807 to 53893826 19 + TSS region transcription start site region 157038
Cpgi11069 19 53902769 to 53904205 1436 CpG island CpG island 11069
Tssr157039 19 53903234 to 53903277 43 + TSS region transcription start site region 157039
Tssr5552 19 53903345 to 53903366 21 + TSS region transcription start site region 5552
Tssr157040 19 53903384 to 53903403 19 + TSS region transcription start site region 157040
Tssr157041 19 53903808 to 53903827 19 + TSS region transcription start site region 157041
2310035P21Rik 19 53903995 to 53904957 962 unclassified gene RIKEN cDNA 2310035P21 gene
Tssr157042 19 53906234 to 53906255 21 + TSS region transcription start site region 157042
Tssr157043 19 53906524 to 53906545 21 + TSS region transcription start site region 157043
Tssr157044 19 53906573 to 53906593 20 + TSS region transcription start site region 157044
Tssr157045 19 53907366 to 53907376 10 + TSS region transcription start site region 157045
D19Mit36 19 53922910 to 53923073 163 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 36
Tssr157046 19 53929260 to 53929276 16 + TSS region transcription start site region 157046
Tssr157047 19 53929280 to 53929291 11 + TSS region transcription start site region 157047
Tssr157048 19 53929371 to 53929385 14 + TSS region transcription start site region 157048
Bbip1 19 53929677 to 53944627 14950 - protein coding gene BBSome interacting protein 1
Cpgi11070 19 53943854 to 53945848 1994 CpG island CpG island 11070
Tssr157049 19 53944063 to 53944096 33 + TSS region transcription start site region 157049
Tssr159836 19 53944165 to 53944226 61 - TSS region transcription start site region 159836
Tssr159837 19 53944233 to 53944255 22 - TSS region transcription start site region 159837
Tssr5553 19 53944259 to 53944264 5 - TSS region transcription start site region 5553
Shoc2 19 53944306 to 54033268 88962 + protein coding gene Shoc2, leucine rich repeat scaffold protein
Tssr159838 19 53944436 to 53944487 51 - TSS region transcription start site region 159838
Tssr159839 19 53944621 to 53944632 11 - TSS region transcription start site region 159839
Tssr157050 19 53944840 to 53944867 27 + TSS region transcription start site region 157050
Tssr157051 19 53944870 to 53944907 37 + TSS region transcription start site region 157051
Tssr157052 19 53945916 to 53945918 2 + TSS region transcription start site region 157052
Tssr157053 19 53950035 to 53950052 17 + TSS region transcription start site region 157053
Tssr157054 19 53950390 to 53950435 45 + TSS region transcription start site region 157054
4930484I04Rik 19 53976461 to 54001441 24980 unclassified non-coding RNA gene RIKEN cDNA 4930484I04 gene
Tssr157055 19 54020381 to 54020386 5 + TSS region transcription start site region 157055
Cpgi11071 19 54044508 to 54047844 3336 CpG island CpG island 11071
Tssr157056 19 54045065 to 54045082 17 + TSS region transcription start site region 157056
Adra2a 19 54045182 to 54048982 3800 + protein coding gene adrenergic receptor, alpha 2a
Tssr157057 19 54045233 to 54045244 11 + TSS region transcription start site region 157057
Tssr157058 19 54045245 to 54045248 3 + TSS region transcription start site region 157058
Tssr157059 19 54045251 to 54045267 16 + TSS region transcription start site region 157059
Tssr157060 19 54045588 to 54045603 15 + TSS region transcription start site region 157060
Tssr157061 19 54045743 to 54045753 10 + TSS region transcription start site region 157061
Cpgi11072 19 54114953 to 54115202 249 CpG island CpG island 11072
Gm41865 19 54154877 to 54175117 20240 + lncRNA gene predicted gene, 41865
Cpgi11073 19 54192551 to 54193045 494 CpG island CpG island 11073
Gm41866 19 54198385 to 54201323 2938 - lncRNA gene predicted gene, 41866
D19Mit124 19 54393005 to 54393128 123 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 124