Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:53496820-58178654

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546 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q14 19 22335962 to 53923073 31587111 QTL weight 3 weeks QTL 14
Acsns1 19 47909441 to 55038113 7128672 QTL Angiostrongylus costaricensis nematode susceptibility 1
Cpgi11063 19 53500398 to 53500787 389 CpG island CpG island 11063
Cpgi11064 19 53528650 to 53530195 1545 CpG island CpG island 11064
Tssr159828 19 53528872 to 53528881 9 - TSS region transcription start site region 159828
Tssr159829 19 53528895 to 53528909 14 - TSS region transcription start site region 159829
Tssr159830 19 53528961 to 53528989 28 - TSS region transcription start site region 159830
Tssr156985 19 53529100 to 53529105 5 + TSS region transcription start site region 156985
Tssr156986 19 53529137 to 53529151 14 + TSS region transcription start site region 156986
Dusp5 19 53529318 to 53541322 12004 + protein coding gene dual specificity phosphatase 5
Tssr156987 19 53533810 to 53533821 11 + TSS region transcription start site region 156987
Tssr156988 19 53533824 to 53533839 15 + TSS region transcription start site region 156988
Tssr156989 19 53533901 to 53533912 11 + TSS region transcription start site region 156989
Tssr156990 19 53533926 to 53533942 16 + TSS region transcription start site region 156990
Tssr156991 19 53537460 to 53537479 19 + TSS region transcription start site region 156991
Tssr156992 19 53537490 to 53537506 16 + TSS region transcription start site region 156992
Tssr156993 19 53537515 to 53537531 16 + TSS region transcription start site region 156993
Tssr156994 19 53537674 to 53537680 6 + TSS region transcription start site region 156994
Tssr156995 19 53539373 to 53539391 18 + TSS region transcription start site region 156995
Tssr156996 19 53539507 to 53539520 13 + TSS region transcription start site region 156996
Tssr156997 19 53539620 to 53539638 18 + TSS region transcription start site region 156997
Tssr156998 19 53539703 to 53539718 15 + TSS region transcription start site region 156998
Tssr159831 19 53541118 to 53541125 7 - TSS region transcription start site region 159831
Tssr156999 19 53547929 to 53547941 12 + TSS region transcription start site region 156999
Tssr159832 19 53573319 to 53573331 12 - TSS region transcription start site region 159832
Nutf2-ps1 19 53588204 to 53589067 863 - pseudogene nuclear transport factor 2, pseudogene 1
Cpgi11065 19 53599875 to 53601543 1668 CpG island CpG island 11065
Tssr159833 19 53600005 to 53600013 8 - TSS region transcription start site region 159833
Tssr157000 19 53600160 to 53600174 14 + TSS region transcription start site region 157000
Tssr157001 19 53600377 to 53600435 58 + TSS region transcription start site region 157001
Smc3 19 53600396 to 53645831 45435 + protein coding gene structural maintenance of chromosomes 3
Tssr157002 19 53600449 to 53600478 29 + TSS region transcription start site region 157002
Tssr157003 19 53609367 to 53609371 4 + TSS region transcription start site region 157003
Tssr157004 19 53618891 to 53618896 5 + TSS region transcription start site region 157004
Tssr157005 19 53621826 to 53621861 35 + TSS region transcription start site region 157005
Tssr157006 19 53623045 to 53623058 13 + TSS region transcription start site region 157006
Tssr157007 19 53623149 to 53623186 37 + TSS region transcription start site region 157007
Tssr157008 19 53633987 to 53634005 18 + TSS region transcription start site region 157008
Tssr157009 19 53639327 to 53639369 42 + TSS region transcription start site region 157009
Tssr157010 19 53660987 to 53661003 16 + TSS region transcription start site region 157010
Gm46653 19 53673178 to 53675863 2685 - lncRNA gene predicted gene, 46653
Cpgi11066 19 53676228 to 53677711 1483 CpG island CpG island 11066
Tssr157011 19 53676373 to 53676416 43 + TSS region transcription start site region 157011
Tssr157012 19 53677286 to 53677291 5 + TSS region transcription start site region 157012
Rbm20 19 53677306 to 53867080 189774 + protein coding gene RNA binding motif protein 20
Tssr157013 19 53677327 to 53677340 13 + TSS region transcription start site region 157013
Tssr157014 19 53677363 to 53677379 16 + TSS region transcription start site region 157014
Tssr157015 19 53677395 to 53677425 30 + TSS region transcription start site region 157015
Tssr157016 19 53700641 to 53700653 12 + TSS region transcription start site region 157016
Tssr157017 19 53700743 to 53700750 7 + TSS region transcription start site region 157017
Tssr157018 19 53700865 to 53700887 22 + TSS region transcription start site region 157018
Cpgi11067 19 53704916 to 53705297 381 CpG island CpG island 11067
Tssr157019 19 53717845 to 53717857 12 + TSS region transcription start site region 157019
Tssr157020 19 53717891 to 53717904 13 + TSS region transcription start site region 157020
Tssr157021 19 53717919 to 53717937 18 + TSS region transcription start site region 157021
Tssr157022 19 53717968 to 53717982 14 + TSS region transcription start site region 157022
Tssr157023 19 53718024 to 53718041 17 + TSS region transcription start site region 157023
Tssr157024 19 53739239 to 53739244 5 + TSS region transcription start site region 157024
Tssr157025 19 53749025 to 53749028 3 + TSS region transcription start site region 157025
Gm30943 19 53754244 to 53758239 3995 + lncRNA gene predicted gene, 30943
Tanidd1 19 53764166 to 53764287 121 QTL TallyHo associated non-insulin dependent diabetes mellitus 1
D19Mit103 19 53764166 to 53764287 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 103
Gm16298 19 53767891 to 53768310 419 - pseudogene predicted gene 16298
Gm30890 19 53770365 to 53788290 17925 - lncRNA gene predicted gene, 30890
Tssr157026 19 53771828 to 53771838 10 + TSS region transcription start site region 157026
Tssr159834 19 53789697 to 53789706 9 - TSS region transcription start site region 159834
Tssr159835 19 53791839 to 53791847 8 - TSS region transcription start site region 159835
Tssr157027 19 53793266 to 53793275 9 + TSS region transcription start site region 157027
Tssr157028 19 53793291 to 53793341 50 + TSS region transcription start site region 157028
Tssr157029 19 53793347 to 53793392 45 + TSS region transcription start site region 157029
Tssr157030 19 53793397 to 53793411 14 + TSS region transcription start site region 157030
Tssr157031 19 53800852 to 53800863 11 + TSS region transcription start site region 157031
Tssr157032 19 53807534 to 53807543 9 + TSS region transcription start site region 157032
Gm16299 19 53819354 to 53825128 5774 - antisense lncRNA gene predicted gene 16299
Tssr157033 19 53821674 to 53821709 35 + TSS region transcription start site region 157033
Tssr157034 19 53832635 to 53832654 19 + TSS region transcription start site region 157034
Cpgi11068 19 53843240 to 53843412 172 CpG island CpG island 11068
Tssr157035 19 53852914 to 53852923 9 + TSS region transcription start site region 157035
Gm41863 19 53855298 to 53860220 4922 - lncRNA gene predicted gene, 41863
Tssr157036 19 53863616 to 53863626 10 + TSS region transcription start site region 157036
Gm30990 19 53871785 to 53903185 31400 - lncRNA gene predicted gene, 30990
Tssr5551 19 53874818 to 53874825 7 - TSS region transcription start site region 5551
Tssr157037 19 53891258 to 53891264 6 + TSS region transcription start site region 157037
Pdcd4 19 53892231 to 53929861 37630 + protein coding gene programmed cell death 4
Tssr157038 19 53893807 to 53893826 19 + TSS region transcription start site region 157038
Cpgi11069 19 53902769 to 53904205 1436 CpG island CpG island 11069
Tssr157039 19 53903234 to 53903277 43 + TSS region transcription start site region 157039
Tssr5552 19 53903345 to 53903366 21 + TSS region transcription start site region 5552
Tssr157040 19 53903384 to 53903403 19 + TSS region transcription start site region 157040
Tssr157041 19 53903808 to 53903827 19 + TSS region transcription start site region 157041
2310035P21Rik 19 53903995 to 53904957 962 unclassified gene RIKEN cDNA 2310035P21 gene
Tssr157042 19 53906234 to 53906255 21 + TSS region transcription start site region 157042
Tssr157043 19 53906524 to 53906545 21 + TSS region transcription start site region 157043
Tssr157044 19 53906573 to 53906593 20 + TSS region transcription start site region 157044
Tssr157045 19 53907366 to 53907376 10 + TSS region transcription start site region 157045
D19Mit36 19 53922910 to 53923073 163 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 36
Tssr157046 19 53929260 to 53929276 16 + TSS region transcription start site region 157046
Tssr157047 19 53929280 to 53929291 11 + TSS region transcription start site region 157047
Tssr157048 19 53929371 to 53929385 14 + TSS region transcription start site region 157048
Bbip1 19 53929677 to 53944627 14950 - protein coding gene BBSome interacting protein 1
Cpgi11070 19 53943854 to 53945848 1994 CpG island CpG island 11070
Tssr157049 19 53944063 to 53944096 33 + TSS region transcription start site region 157049
Tssr159836 19 53944165 to 53944226 61 - TSS region transcription start site region 159836
Tssr159837 19 53944233 to 53944255 22 - TSS region transcription start site region 159837
Tssr5553 19 53944259 to 53944264 5 - TSS region transcription start site region 5553
Shoc2 19 53944306 to 54033268 88962 + protein coding gene Shoc2, leucine rich repeat scaffold protein
Tssr159838 19 53944436 to 53944487 51 - TSS region transcription start site region 159838
Tssr159839 19 53944621 to 53944632 11 - TSS region transcription start site region 159839
Tssr157050 19 53944840 to 53944867 27 + TSS region transcription start site region 157050
Tssr157051 19 53944870 to 53944907 37 + TSS region transcription start site region 157051
Tssr157052 19 53945916 to 53945918 2 + TSS region transcription start site region 157052
Tssr157053 19 53950035 to 53950052 17 + TSS region transcription start site region 157053
Tssr157054 19 53950390 to 53950435 45 + TSS region transcription start site region 157054
4930484I04Rik 19 53976461 to 54001441 24980 unclassified non-coding RNA gene RIKEN cDNA 4930484I04 gene
Tssr157055 19 54020381 to 54020386 5 + TSS region transcription start site region 157055
Cpgi11071 19 54044508 to 54047844 3336 CpG island CpG island 11071
Tssr157056 19 54045065 to 54045082 17 + TSS region transcription start site region 157056
Adra2a 19 54045182 to 54048982 3800 + protein coding gene adrenergic receptor, alpha 2a
Tssr157057 19 54045233 to 54045244 11 + TSS region transcription start site region 157057
Tssr157058 19 54045245 to 54045248 3 + TSS region transcription start site region 157058
Tssr157059 19 54045251 to 54045267 16 + TSS region transcription start site region 157059
Tssr157060 19 54045588 to 54045603 15 + TSS region transcription start site region 157060
Tssr157061 19 54045743 to 54045753 10 + TSS region transcription start site region 157061
Cpgi11072 19 54114953 to 54115202 249 CpG island CpG island 11072
Gm41865 19 54154877 to 54175117 20240 + lncRNA gene predicted gene, 41865
Cpgi11073 19 54192551 to 54193045 494 CpG island CpG island 11073
Gm41866 19 54198385 to 54201323 2938 - lncRNA gene predicted gene, 41866
D19Mit124 19 54393005 to 54393128 123 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 124
Gm31301 19 54465865 to 54586424 120559 + lncRNA gene predicted gene, 31301
Tssr157062 19 54513529 to 54513534 5 + TSS region transcription start site region 157062
Tssr5554 19 54728346 to 54728351 5 + TSS region transcription start site region 5554
Gm41867 19 54758648 to 54760955 2307 - lncRNA gene predicted gene, 41867
D19Mit1 19 54894550 to 54894671 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 1
Chldq9 19 54894550 to 54894671 121 QTL cholesterol and HDL QTL 9
D19Mit34 19 55037939 to 55038113 174 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 34
Gpam 19 55069734 to 55099451 29717 - protein coding gene glycerol-3-phosphate acyltransferase, mitochondrial
Tssr159840 19 55076211 to 55076215 4 - TSS region transcription start site region 159840
Tssr159841 19 55095724 to 55095764 40 - TSS region transcription start site region 159841
Tssr159842 19 55096741 to 55096754 13 - TSS region transcription start site region 159842
Tssr159843 19 55096884 to 55096888 4 - TSS region transcription start site region 159843
Cpgi11074 19 55098850 to 55100086 1236 CpG island CpG island 11074
Tssr159844 19 55099417 to 55099492 75 - TSS region transcription start site region 159844
Gm31356 19 55099543 to 55118931 19388 + lncRNA gene predicted gene, 31356
Tssr159845 19 55103030 to 55103064 34 - TSS region transcription start site region 159845
Tssr159846 19 55103070 to 55103089 19 - TSS region transcription start site region 159846
Tssr159847 19 55103092 to 55103099 7 - TSS region transcription start site region 159847
Tssr159848 19 55103125 to 55103146 21 - TSS region transcription start site region 159848
Tssr159849 19 55103341 to 55103349 8 - TSS region transcription start site region 159849
Tssr159850 19 55114631 to 55114651 20 - TSS region transcription start site region 159850
Tssr159851 19 55117001 to 55117014 13 - TSS region transcription start site region 159851
Tssr159852 19 55119810 to 55119815 5 - TSS region transcription start site region 159852
Tssr159853 19 55127166 to 55127179 13 - TSS region transcription start site region 159853
Tssr159854 19 55127180 to 55127243 63 - TSS region transcription start site region 159854
Tssr159855 19 55127247 to 55127257 10 - TSS region transcription start site region 159855
Gm31418 19 55127314 to 55140840 13526 + lncRNA gene predicted gene, 31418
Gm10755 19 55132641 to 55134831 2190 unclassified gene predicted gene 10755
Tssr157063 19 55180716 to 55180733 17 + TSS region transcription start site region 157063
Tectb 19 55180733 to 55196313 15580 + protein coding gene tectorin beta
Tssr157064 19 55180799 to 55180809 10 + TSS region transcription start site region 157064
Tssr157065 19 55181883 to 55181894 11 + TSS region transcription start site region 157065
Tssr5555 19 55183654 to 55183685 31 + TSS region transcription start site region 5555
Tssr5556 19 55183788 to 55183800 12 - TSS region transcription start site region 5556
Mir6715 19 55192678 to 55192734 56 + miRNA gene microRNA 6715
Tssr159856 19 55195076 to 55195087 11 - TSS region transcription start site region 159856
Tssr157066 19 55195879 to 55195904 25 + TSS region transcription start site region 157066
Tssr5557 19 55196301 to 55196315 14 - TSS region transcription start site region 5557
Gucy2g 19 55198297 to 55241236 42939 - protein coding gene guanylate cyclase 2g
Cpgi11075 19 55207918 to 55208194 276 CpG island CpG island 11075
Tssr159857 19 55217566 to 55217577 11 - TSS region transcription start site region 159857
Cpgi11076 19 55218392 to 55218657 265 CpG island CpG island 11076
Tssr157067 19 55219709 to 55219718 9 + TSS region transcription start site region 157067
Tssr5558 19 55251834 to 55251843 9 + TSS region transcription start site region 5558
Acsl5 19 55251884 to 55296628 44744 + protein coding gene acyl-CoA synthetase long-chain family member 5
Tssr157068 19 55251898 to 55251903 5 + TSS region transcription start site region 157068
Tssr157069 19 55251925 to 55251944 19 + TSS region transcription start site region 157069
Tssr157070 19 55251952 to 55251963 11 + TSS region transcription start site region 157070
Tssr157071 19 55253641 to 55253678 37 + TSS region transcription start site region 157071
Tssr157072 19 55253693 to 55253726 33 + TSS region transcription start site region 157072
Tssr157073 19 55253900 to 55253950 50 + TSS region transcription start site region 157073
Tssr157074 19 55253966 to 55253977 11 + TSS region transcription start site region 157074
Tssr157075 19 55253981 to 55253992 11 + TSS region transcription start site region 157075
Cpgi11077 19 55254015 to 55254234 219 CpG island CpG island 11077
Gm31595 19 55262382 to 55274479 12097 - lncRNA gene predicted gene, 31595
Tssr157076 19 55264466 to 55264506 40 + TSS region transcription start site region 157076
Tssr157077 19 55266607 to 55266638 31 + TSS region transcription start site region 157077
Tssr157078 19 55284246 to 55284261 15 + TSS region transcription start site region 157078
Tssr157079 19 55284325 to 55284347 22 + TSS region transcription start site region 157079
Tssr157080 19 55285970 to 55285992 22 + TSS region transcription start site region 157080
Tssr157081 19 55286409 to 55286418 9 + TSS region transcription start site region 157081
Zdhhc6 19 55298293 to 55316032 17739 - protein coding gene zinc finger, DHHC domain containing 6
D19Mit55 19 55305015 to 55305156 141 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 55
Tssr159858 19 55311886 to 55311920 34 - TSS region transcription start site region 159858
Cpgi11078 19 55315473 to 55316750 1277 CpG island CpG island 11078
Tssr157082 19 55315625 to 55315636 11 + TSS region transcription start site region 157082
Tssr157083 19 55315673 to 55315677 4 + TSS region transcription start site region 157083
Tssr159859 19 55315904 to 55315907 3 - TSS region transcription start site region 159859
Tssr159860 19 55315980 to 55316038 58 - TSS region transcription start site region 159860
Tssr157084 19 55316278 to 55316305 27 + TSS region transcription start site region 157084
Vti1a 19 55316295 to 55627309 311014 + protein coding gene vesicle transport through interaction with t-SNAREs 1A
Tssr157085 19 55316313 to 55316367 54 + TSS region transcription start site region 157085