Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:53080185-53430196

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94 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30234 19 53050716 to 53105907 55191 - lncRNA gene predicted gene, 30234
1700054A03Rik 19 53076252 to 53084392 8140 + lincRNA gene RIKEN cDNA 1700054A03 gene
Gm41862 19 53085037 to 53088696 3659 + lncRNA gene predicted gene, 41862
Tssr156937 19 53085101 to 53085110 9 + TSS region transcription start site region 156937
D19Mit114 19 53103189 to 53103519 330 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology-114
Gm30381 19 53127579 to 53131241 3662 + lncRNA gene predicted gene, 30381
Tssr156938 19 53128698 to 53128708 10 + TSS region transcription start site region 156938
Tssr156939 19 53131253 to 53131254 1 + TSS region transcription start site region 156939
Gm9618 19 53133413 to 53139839 6426 - lncRNA gene predicted gene 9618
Tssr156940 19 53140430 to 53140449 19 + TSS region transcription start site region 156940
Add3 19 53140443 to 53247326 106883 + protein coding gene adducin 3 (gamma)
Tssr156941 19 53140471 to 53140505 34 + TSS region transcription start site region 156941
Cpgi11052 19 53140482 to 53140790 308 CpG island CpG island 11052
Tssr156942 19 53140508 to 53140525 17 + TSS region transcription start site region 156942
Tssr156943 19 53140536 to 53140593 57 + TSS region transcription start site region 156943
Tssr156944 19 53140609 to 53140620 11 + TSS region transcription start site region 156944
Tssr156945 19 53140629 to 53140645 16 + TSS region transcription start site region 156945
Cpgi11053 19 53142091 to 53143643 1552 CpG island CpG island 11053
Tssr156946 19 53142775 to 53142778 3 + TSS region transcription start site region 156946
Tssr156947 19 53142785 to 53142803 18 + TSS region transcription start site region 156947
Tssr159806 19 53143147 to 53143177 30 - TSS region transcription start site region 159806
Gm24724 19 53159757 to 53159863 106 - snRNA gene predicted gene, 24724
Cpgi11054 19 53184385 to 53184559 174 CpG island CpG island 11054
Tssr156948 19 53184432 to 53184435 3 + TSS region transcription start site region 156948
Tssr156949 19 53185710 to 53185719 9 + TSS region transcription start site region 156949
Tssr5549 19 53185740 to 53185750 10 + TSS region transcription start site region 5549
Tssr156950 19 53185759 to 53185772 13 + TSS region transcription start site region 156950
Tssr156951 19 53185795 to 53185814 19 + TSS region transcription start site region 156951
Tssr156952 19 53185815 to 53185826 11 + TSS region transcription start site region 156952
Tssr159807 19 53188364 to 53188375 11 - TSS region transcription start site region 159807
Tssr156953 19 53194284 to 53194297 13 + TSS region transcription start site region 156953
Tssr156954 19 53194308 to 53194319 11 + TSS region transcription start site region 156954
Tssr156955 19 53194335 to 53194346 11 + TSS region transcription start site region 156955
Tssr156956 19 53194358 to 53194415 57 + TSS region transcription start site region 156956
Tssr156957 19 53194496 to 53194507 11 + TSS region transcription start site region 156957
Tssr156958 19 53194526 to 53194544 18 + TSS region transcription start site region 156958
Tssr159808 19 53195231 to 53195236 5 - TSS region transcription start site region 159808
Tssr156959 19 53195330 to 53195361 31 + TSS region transcription start site region 156959
Tssr156960 19 53195469 to 53195485 16 + TSS region transcription start site region 156960
Tssr156961 19 53198000 to 53198008 8 + TSS region transcription start site region 156961
Tssr156962 19 53198020 to 53198025 5 + TSS region transcription start site region 156962
Tssr156963 19 53198033 to 53198058 25 + TSS region transcription start site region 156963
Tssr159809 19 53199140 to 53199145 5 - TSS region transcription start site region 159809
1700001K23Rik 19 53248736 to 53255205 6469 - lncRNA gene RIKEN cDNA 1700001K23 gene
Tssr156964 19 53251249 to 53251285 36 + TSS region transcription start site region 156964
Tssr159810 19 53255185 to 53255196 11 - TSS region transcription start site region 159810
Gm36339 19 53265747 to 53266864 1117 + pseudogene predicted gene, 36339
Cpgi11055 19 53273988 to 53274407 419 CpG island CpG island 11055
Tssr159811 19 53283904 to 53283915 11 - TSS region transcription start site region 159811
D19Mit75 19 53309971 to 53310067 96 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 75
Cpgi11056 19 53310323 to 53312018 1695 CpG island CpG island 11056
Tssr156965 19 53310420 to 53310447 27 + TSS region transcription start site region 156965
Tssr156966 19 53310458 to 53310463 5 + TSS region transcription start site region 156966
Tssr156967 19 53310475 to 53310494 19 + TSS region transcription start site region 156967
Tssr156968 19 53310495 to 53310552 57 + TSS region transcription start site region 156968
Mxi1 19 53310506 to 53375810 65304 + protein coding gene MAX interactor 1, dimerization protein
Tssr156969 19 53310570 to 53310579 9 + TSS region transcription start site region 156969
Tssr156970 19 53310858 to 53310871 13 + TSS region transcription start site region 156970
Tssr156971 19 53311375 to 53311391 16 + TSS region transcription start site region 156971
Cpgi11057 19 53312452 to 53314612 2160 CpG island CpG island 11057
Tssr159812 19 53313253 to 53313270 17 - TSS region transcription start site region 159812
Tssr159813 19 53313292 to 53313310 18 - TSS region transcription start site region 159813
Tssr156972 19 53313424 to 53313435 11 + TSS region transcription start site region 156972
Gm30541 19 53317356 to 53326998 9642 - lncRNA gene predicted gene, 30541
Tssr159814 19 53318557 to 53318607 50 - TSS region transcription start site region 159814
Tssr5550 19 53319264 to 53319266 2 + TSS region transcription start site region 5550
Cpgi11058 19 53325554 to 53326096 542 CpG island CpG island 11058
Cpgi11059 19 53329122 to 53330574 1452 CpG island CpG island 11059
Tssr156973 19 53329424 to 53329478 54 + TSS region transcription start site region 156973
Tssr156974 19 53329507 to 53329518 11 + TSS region transcription start site region 156974
Tssr156975 19 53352887 to 53352893 6 + TSS region transcription start site region 156975
Tssr156976 19 53357243 to 53357252 9 + TSS region transcription start site region 156976
Gm10197 19 53371566 to 53371766 200 - protein coding gene predicted gene 10197
Smndc1 19 53379214 to 53390573 11359 - protein coding gene survival motor neuron domain containing 1
Tssr159815 19 53389671 to 53389675 4 - TSS region transcription start site region 159815
Cpgi11060 19 53389796 to 53391110 1314 CpG island CpG island 11060
Tssr159816 19 53390535 to 53390544 9 - TSS region transcription start site region 159816
Tssr159817 19 53390550 to 53390555 5 - TSS region transcription start site region 159817
Tssr159818 19 53390559 to 53390581 22 - TSS region transcription start site region 159818
Tssr159819 19 53390589 to 53390622 33 - TSS region transcription start site region 159819
Tssr156977 19 53390773 to 53390820 47 + TSS region transcription start site region 156977
8030456M14Rik 19 53390788 to 53391796 1008 unclassified gene RIKEN cDNA 8030456M14 gene
Tssr156978 19 53390881 to 53390930 49 + TSS region transcription start site region 156978
Tssr156979 19 53421229 to 53421233 4 + TSS region transcription start site region 156979
Tssr156980 19 53421314 to 53421328 14 + TSS region transcription start site region 156980
Tssr156981 19 53421374 to 53421386 12 + TSS region transcription start site region 156981
Tssr156982 19 53421619 to 53421647 28 + TSS region transcription start site region 156982
Tssr159820 19 53423343 to 53423362 19 - TSS region transcription start site region 159820
Cpgi11061 19 53423478 to 53423905 427 CpG island CpG island 11061
Tssr159821 19 53424228 to 53424236 8 - TSS region transcription start site region 159821
Tssr156983 19 53424412 to 53424417 5 + TSS region transcription start site region 156983
Tssr159822 19 53424728 to 53424744 16 - TSS region transcription start site region 159822
Cpgi11062 19 53424756 to 53425026 270 CpG island CpG island 11062
Tssr159823 19 53424787 to 53424801 14 - TSS region transcription start site region 159823