Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5266630-6556637

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809 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pacs1 19 5133688 to 5273119 139431 - protein coding gene phosphofurin acidic cluster sorting protein 1
Cpgi10438 19 5272247 to 5273585 1338 CpG island CpG island 10438
Tssr157559 19 5272892 to 5272901 9 - TSS region transcription start site region 157559
Tssr157560 19 5272982 to 5273000 18 - TSS region transcription start site region 157560
Tssr157561 19 5273007 to 5273037 30 - TSS region transcription start site region 157561
Tssr157562 19 5273068 to 5273079 11 - TSS region transcription start site region 157562
Tssr157563 19 5273080 to 5273129 49 - TSS region transcription start site region 157563
Tssr157564 19 5273265 to 5273290 25 - TSS region transcription start site region 157564
Sf3b2 19 5273923 to 5295455 21532 - protein coding gene splicing factor 3b, subunit 2
Tssr154393 19 5286803 to 5286822 19 + TSS region transcription start site region 154393
Tssr154394 19 5286880 to 5286924 44 + TSS region transcription start site region 154394
Tssr157565 19 5293188 to 5293198 10 - TSS region transcription start site region 157565
Tssr157566 19 5293275 to 5293289 14 - TSS region transcription start site region 157566
Cpgi10439 19 5295030 to 5295853 823 CpG island CpG island 10439
Tssr157567 19 5295397 to 5295430 33 - TSS region transcription start site region 157567
Tssr154395 19 5298276 to 5298287 11 + TSS region transcription start site region 154395
Tssr154396 19 5298302 to 5298357 55 + TSS region transcription start site region 154396
Cpgi10440 19 5298303 to 5298516 213 CpG island CpG island 10440
Gal3st3 19 5298331 to 5308738 10407 + protein coding gene galactose-3-O-sulfotransferase 3
Tssr154397 19 5298364 to 5298367 3 + TSS region transcription start site region 154397
Tssr157568 19 5302500 to 5302502 2 - TSS region transcription start site region 157568
Gm42064 19 5305873 to 5306997 1124 - lncRNA gene predicted gene, 42064
Cpgi10441 19 5306679 to 5308221 1542 CpG island CpG island 10441
Tssr157569 19 5307071 to 5307114 43 - TSS region transcription start site region 157569
Tssr157570 19 5307508 to 5307528 20 - TSS region transcription start site region 157570
Tssr154398 19 5308252 to 5308272 20 + TSS region transcription start site region 154398
Tssr154399 19 5308302 to 5308313 11 + TSS region transcription start site region 154399
Tssr154400 19 5308367 to 5308371 4 + TSS region transcription start site region 154400
D19Mit59 19 5321112 to 5321310 198 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 59
Nstr1 19 5321112 to 5321310 198 QTL nerve sheath tumor resistance QTL 1
Cpgi10442 19 5323944 to 5324095 151 CpG island CpG island 10442
Gm7074 19 5324333 to 5325253 920 + pseudogene predicted gene 7074
Tssr154401 19 5328000 to 5328017 17 + TSS region transcription start site region 154401
Tssr154402 19 5328049 to 5328061 12 + TSS region transcription start site region 154402
Tssr154403 19 5335619 to 5335630 11 + TSS region transcription start site region 154403
Tssr154404 19 5335644 to 5335651 7 + TSS region transcription start site region 154404
Catsper1 19 5335741 to 5344153 8412 + protein coding gene cation channel, sperm associated 1
Cst6 19 5344705 to 5349574 4869 - protein coding gene cystatin E/M
Cpgi10443 19 5349104 to 5349507 403 CpG island CpG island 10443
Tssr157571 19 5349340 to 5349358 18 - TSS region transcription start site region 157571
Banf1 19 5364641 to 5366645 2004 - protein coding gene barrier to autointegration factor 1
Tssr157572 19 5364802 to 5364825 23 - TSS region transcription start site region 157572
Tssr157573 19 5364859 to 5364878 19 - TSS region transcription start site region 157573
Tssr157574 19 5364893 to 5364918 25 - TSS region transcription start site region 157574
Cpgi10444 19 5365701 to 5367695 1994 CpG island CpG island 10444
Tssr157575 19 5366253 to 5366264 11 - TSS region transcription start site region 157575
Tssr157576 19 5366269 to 5366280 11 - TSS region transcription start site region 157576
Tssr157577 19 5366285 to 5366378 93 - TSS region transcription start site region 157577
Tssr154405 19 5366387 to 5366421 34 + TSS region transcription start site region 154405
Tssr157578 19 5366598 to 5366611 13 - TSS region transcription start site region 157578
Tssr157579 19 5366626 to 5366663 37 - TSS region transcription start site region 157579
Tssr154406 19 5366764 to 5366851 87 + TSS region transcription start site region 154406
Eif1ad 19 5366813 to 5371511 4698 + protein coding gene eukaryotic translation initiation factor 1A domain containing
Tssr154407 19 5366948 to 5366962 14 + TSS region transcription start site region 154407
Tssr154408 19 5366965 to 5367037 72 + TSS region transcription start site region 154408
Sart1 19 5377523 to 5388703 11180 - protein coding gene squamous cell carcinoma antigen recognized by T cells 1
Cpgi10445 19 5387749 to 5389130 1381 CpG island CpG island 10445
D330050I16Rik 19 5388336 to 5390069 1733 + lncRNA gene RIKEN cDNA D330050I16 gene
Tssr157580 19 5388629 to 5388641 12 - TSS region transcription start site region 157580
Tssr157581 19 5388656 to 5388691 35 - TSS region transcription start site region 157581
Tssr157582 19 5388726 to 5388735 9 - TSS region transcription start site region 157582
Tssr154409 19 5388814 to 5388831 17 + TSS region transcription start site region 154409
Tssr154410 19 5388838 to 5388885 47 + TSS region transcription start site region 154410
Tssr157583 19 5389924 to 5389942 18 - TSS region transcription start site region 157583
Tsga10ip 19 5390049 to 5394401 4352 - protein coding gene testis specific 10 interacting protein
Tssr157584 19 5394335 to 5394383 48 - TSS region transcription start site region 157584
Tssr157585 19 5394385 to 5394402 17 - TSS region transcription start site region 157585
Tssr154411 19 5394632 to 5394637 5 + TSS region transcription start site region 154411
Tssr157586 19 5402460 to 5402484 24 - TSS region transcription start site region 157586
Tssr157587 19 5402493 to 5402528 35 - TSS region transcription start site region 157587
Tssr154412 19 5406089 to 5406093 4 + TSS region transcription start site region 154412
Tssr157588 19 5406601 to 5406606 5 - TSS region transcription start site region 157588
Tssr5410 19 5406796 to 5406836 40 + TSS region transcription start site region 5410
4930481A15Rik 19 5406815 to 5422847 16032 + antisense lncRNA gene RIKEN cDNA 4930481A15 gene
Tssr154413 19 5406864 to 5406880 16 + TSS region transcription start site region 154413
Tssr157589 19 5408432 to 5408468 36 - TSS region transcription start site region 157589
Tssr154414 19 5414888 to 5414912 24 + TSS region transcription start site region 154414
Tssr154415 19 5414974 to 5414978 4 + TSS region transcription start site region 154415
Gm6293 19 5415565 to 5415759 194 - pseudogene predicted pseudogene 6293
Cpgi10446 19 5415636 to 5415867 231 CpG island CpG island 10446
Tssr157590 19 5415789 to 5415793 4 - TSS region transcription start site region 157590
Drap1 19 5422805 to 5424979 2174 - protein coding gene Dr1 associated protein 1 (negative cofactor 2 alpha)
Tssr157591 19 5423800 to 5423821 21 - TSS region transcription start site region 157591
Tssr157592 19 5424089 to 5424106 17 - TSS region transcription start site region 157592
Cpgi10447 19 5424107 to 5425751 1644 CpG island CpG island 10447
Tssr157593 19 5424250 to 5424287 37 - TSS region transcription start site region 157593
Tssr157594 19 5424468 to 5424565 97 - TSS region transcription start site region 157594
Tssr157595 19 5424768 to 5424811 43 - TSS region transcription start site region 157595
Tssr157596 19 5424822 to 5424845 23 - TSS region transcription start site region 157596
Tssr157597 19 5424878 to 5424890 12 - TSS region transcription start site region 157597
Tssr157598 19 5424906 to 5425026 120 - TSS region transcription start site region 157598
Tssr154416 19 5425023 to 5425037 14 + TSS region transcription start site region 154416
Tssr157599 19 5425035 to 5425046 11 - TSS region transcription start site region 157599
Tssr154417 19 5425121 to 5425173 52 + TSS region transcription start site region 154417
AI837181 19 5425157 to 5427313 2156 + protein coding gene expressed sequence AI837181
Tssr154418 19 5425237 to 5425248 11 + TSS region transcription start site region 154418
Tssr157600 19 5425367 to 5425388 21 - TSS region transcription start site region 157600
Gm25432 19 5435900 to 5435965 65 + snoRNA gene predicted gene, 25432
Gm31070 19 5439246 to 5439521 275 - pseudogene predicted gene, 31070
Cpgi10448 19 5447302 to 5448973 1671 CpG island CpG island 10448
Tssr154419 19 5447692 to 5447711 19 + TSS region transcription start site region 154419
Fosl1 19 5447698 to 5455938 8240 + protein coding gene fos-like antigen 1
Tssr5411 19 5447724 to 5447729 5 + TSS region transcription start site region 5411
Tssr157601 19 5447770 to 5447773 3 - TSS region transcription start site region 157601
Tssr154420 19 5447859 to 5447866 7 + TSS region transcription start site region 154420
Tssr154421 19 5447886 to 5447905 19 + TSS region transcription start site region 154421
Tssr154422 19 5450233 to 5450282 49 + TSS region transcription start site region 154422
Tssr154423 19 5454423 to 5454429 6 + TSS region transcription start site region 154423
Tssr154424 19 5455049 to 5455068 19 + TSS region transcription start site region 154424
Tssr154425 19 5455590 to 5455612 22 + TSS region transcription start site region 154425
Cpgi10449 19 5456356 to 5457758 1402 CpG island CpG island 10449
Ccdc85b 19 5456789 to 5457397 608 - protein coding gene coiled-coil domain containing 85B
Tssr157602 19 5457488 to 5457494 6 - TSS region transcription start site region 157602
Tssr157603 19 5457504 to 5457573 69 - TSS region transcription start site region 157603
Cpgi10450 19 5460496 to 5461213 717 CpG island CpG island 10450
Tssr154426 19 5460608 to 5460638 30 + TSS region transcription start site region 154426
Fibp 19 5460616 to 5465051 4435 + protein coding gene fibroblast growth factor (acidic) intracellular binding protein
Tssr154427 19 5460648 to 5460655 7 + TSS region transcription start site region 154427
Tssr5412 19 5460659 to 5460666 7 + TSS region transcription start site region 5412
Tssr154428 19 5464057 to 5464108 51 + TSS region transcription start site region 154428
Ctsw 19 5465240 to 5468498 3258 - protein coding gene cathepsin W
Tssr157604 19 5468487 to 5468506 19 - TSS region transcription start site region 157604
Cpgi10451 19 5473728 to 5474018 290 CpG island CpG island 10451
Efemp2 19 5473973 to 5481853 7880 + protein coding gene epidermal growth factor-containing fibulin-like extracellular matrix protein 2
Cpgi10452 19 5474319 to 5475456 1137 CpG island CpG island 10452
Tssr154429 19 5474617 to 5474644 27 + TSS region transcription start site region 154429
Tssr154430 19 5474681 to 5474775 94 + TSS region transcription start site region 154430
Tssr154431 19 5474796 to 5474822 26 + TSS region transcription start site region 154431
Tssr154432 19 5474878 to 5474895 17 + TSS region transcription start site region 154432
Tssr154433 19 5474911 to 5474938 27 + TSS region transcription start site region 154433
Tssr154434 19 5476132 to 5476138 6 + TSS region transcription start site region 154434
Tssr154435 19 5480085 to 5480098 13 + TSS region transcription start site region 154435
Tssr154436 19 5480272 to 5480320 48 + TSS region transcription start site region 154436
Mus81 19 5482836 to 5488410 5574 - protein coding gene MUS81 structure-specific endonuclease subunit
Cpgi10453 19 5487664 to 5488370 706 CpG island CpG island 10453
Tssr157605 19 5488271 to 5488396 125 - TSS region transcription start site region 157605
1700061A03Rik 19 5488743 to 5489197 454 unclassified gene RIKEN cDNA 1700061A03 gene
Cpgi10454 19 5488914 to 5489479 565 CpG island CpG island 10454
Tssr157606 19 5488941 to 5488950 9 - TSS region transcription start site region 157606
Tssr157607 19 5488960 to 5488972 12 - TSS region transcription start site region 157607
Tssr157608 19 5489046 to 5489058 12 - TSS region transcription start site region 157608
Tssr157609 19 5489077 to 5489091 14 - TSS region transcription start site region 157609
Tssr154437 19 5489318 to 5489361 43 + TSS region transcription start site region 154437
Cpgi10455 19 5490253 to 5491763 1510 CpG island CpG island 10455
Cfl1 19 5490455 to 5494031 3576 + protein coding gene cofilin 1, non-muscle
Tssr154438 19 5490475 to 5490487 12 + TSS region transcription start site region 154438
Tssr154439 19 5490512 to 5490525 13 + TSS region transcription start site region 154439
Tssr154440 19 5490557 to 5490606 49 + TSS region transcription start site region 154440
Tssr154441 19 5493131 to 5493169 38 + TSS region transcription start site region 154441
Tssr154442 19 5493412 to 5493427 15 + TSS region transcription start site region 154442
Tssr154443 19 5493545 to 5493571 26 + TSS region transcription start site region 154443
Tssr154444 19 5493650 to 5493667 17 + TSS region transcription start site region 154444
Tssr154445 19 5493724 to 5493737 13 + TSS region transcription start site region 154445
Tssr154446 19 5493756 to 5493782 26 + TSS region transcription start site region 154446
Tssr154447 19 5493785 to 5493793 8 + TSS region transcription start site region 154447
Tssr154448 19 5493895 to 5493937 42 + TSS region transcription start site region 154448
Tssr154449 19 5494629 to 5494633 4 + TSS region transcription start site region 154449
Snx32 19 5495278 to 5510489 15211 - protein coding gene sorting nexin 32
1700020D05Rik 19 5502767 to 5503787 1020 - protein coding gene RIKEN cDNA 1700020D05 gene
Cpgi10456 19 5503578 to 5503763 185 CpG island CpG island 10456
Tssr157610 19 5503748 to 5503760 12 - TSS region transcription start site region 157610
Tssr157611 19 5503776 to 5503792 16 - TSS region transcription start site region 157611
Cpgi10457 19 5510414 to 5511114 700 CpG island CpG island 10457
Tssr157612 19 5510446 to 5510465 19 - TSS region transcription start site region 157612
Tssr157613 19 5510467 to 5510518 51 - TSS region transcription start site region 157613
Tssr154450 19 5510730 to 5510760 30 + TSS region transcription start site region 154450
Tssr154451 19 5510908 to 5510922 14 + TSS region transcription start site region 154451
Gm31166 19 5512528 to 5550368 37840 + pseudogene predicted gene, 31166
Tssr157614 19 5512850 to 5512876 26 - TSS region transcription start site region 157614
Cpgi10458 19 5529416 to 5529665 249 CpG island CpG island 10458
Ovol1 19 5549137 to 5560575 11438 - protein coding gene ovo like zinc finger 1
Tssr154452 19 5553364 to 5553369 5 + TSS region transcription start site region 154452
Cpgi10459 19 5559655 to 5561559 1904 CpG island CpG island 10459
Tssr154453 19 5560202 to 5560216 14 + TSS region transcription start site region 154453
Tssr157615 19 5560570 to 5560582 12 - TSS region transcription start site region 157615
Tssr157616 19 5560600 to 5560617 17 - TSS region transcription start site region 157616
1810058N15Rik 19 5561051 to 5561678 627 protein coding gene RIKEN cDNA 1810058N15 gene
Cpgi10460 19 5567073 to 5569061 1988 CpG island CpG island 10460
Tssr154454 19 5568002 to 5568062 60 + TSS region transcription start site region 154454
Tssr154455 19 5568068 to 5568089 21 + TSS region transcription start site region 154455
Ap5b1 19 5568074 to 5571261 3187 + protein coding gene adaptor-related protein complex 5, beta 1 subunit
Tssr154456 19 5568413 to 5568447 34 + TSS region transcription start site region 154456
Tssr5413 19 5569345 to 5569391 46 + TSS region transcription start site region 5413
Cpgi10461 19 5601693 to 5602614 921 CpG island CpG island 10461
Tssr154457 19 5601841 to 5601852 11 + TSS region transcription start site region 154457
Tssr154458 19 5601854 to 5601916 62 + TSS region transcription start site region 154458
Rnaseh2c 19 5601873 to 5602959 1086 + protein coding gene ribonuclease H2, subunit C
Kat5 19 5603017 to 5610094 7077 - protein coding gene K(lysine) acetyltransferase 5
Cpgi10462 19 5609403 to 5610432 1029 CpG island CpG island 10462
Tssr154459 19 5609840 to 5609860 20 + TSS region transcription start site region 154459
Tssr157617 19 5610038 to 5610066 28 - TSS region transcription start site region 157617
Tssr154460 19 5610065 to 5610108 43 + TSS region transcription start site region 154460
Tssr5414 19 5614052 to 5614053 1 - TSS region transcription start site region 5414
Cpgi10463 19 5636862 to 5638536 1674 CpG island CpG island 10463
Tssr157618 19 5637375 to 5637391 16 - TSS region transcription start site region 157618
Tssr154461 19 5637475 to 5637486 11 + TSS region transcription start site region 154461
Rela 19 5637483 to 5648130 10647 + protein coding gene v-rel reticuloendotheliosis viral oncogene homolog A (avian)
Tssr154462 19 5637489 to 5637500 11 + TSS region transcription start site region 154462
Tssr154463 19 5637501 to 5637517 16 + TSS region transcription start site region 154463
Tssr154464 19 5637528 to 5637548 20 + TSS region transcription start site region 154464