Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:52585609-53695620

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr156932 19 52613602 to 52613605 3 + TSS region transcription start site region 156932
AA387883 19 52923181 to 52926931 3750 + lncRNA gene expressed sequence AA387883
Gm41861 19 52943109 to 52945972 2863 - lncRNA gene predicted gene, 41861
Xpnpep1 19 52943417 to 53040214 96797 - protein coding gene X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
Tssr159795 19 52953098 to 52953127 29 - TSS region transcription start site region 159795
Mir6407 19 53010656 to 53010756 100 - miRNA gene microRNA 6407
Tssr159796 19 53013449 to 53013461 12 - TSS region transcription start site region 159796
D19Mit7 19 53024074 to 53024188 114 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 7
Tssr159797 19 53028368 to 53028379 11 - TSS region transcription start site region 159797
Tssr159798 19 53032102 to 53032160 58 - TSS region transcription start site region 159798
Cpgi11050 19 53038098 to 53038859 761 CpG island CpG island 11050
Tssr159799 19 53038534 to 53038646 112 - TSS region transcription start site region 159799
Tssr159800 19 53038656 to 53038666 10 - TSS region transcription start site region 159800
Tssr156933 19 53038841 to 53038849 8 + TSS region transcription start site region 156933
Tssr159801 19 53039224 to 53039227 3 - TSS region transcription start site region 159801
Tssr159802 19 53039231 to 53039252 21 - TSS region transcription start site region 159802
Gm30234 19 53050716 to 53105907 55191 - lncRNA gene predicted gene, 30234
Tssr156934 19 53051409 to 53051423 14 + TSS region transcription start site region 156934
Cpgi11051 19 53052144 to 53052314 170 CpG island CpG island 11051
D19Mit26 19 53057422 to 53057555 133 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 26
Tssr159803 19 53058080 to 53058099 19 - TSS region transcription start site region 159803
Tssr156935 19 53062315 to 53062326 11 + TSS region transcription start site region 156935
Tssr159804 19 53064477 to 53064482 5 - TSS region transcription start site region 159804
Tssr159805 19 53076132 to 53076168 36 - TSS region transcription start site region 159805
Tssr156936 19 53076238 to 53076247 9 + TSS region transcription start site region 156936
1700054A03Rik 19 53076252 to 53084392 8140 + lincRNA gene RIKEN cDNA 1700054A03 gene
Gm41862 19 53085037 to 53088696 3659 + lncRNA gene predicted gene, 41862
Tssr156937 19 53085101 to 53085110 9 + TSS region transcription start site region 156937
D19Mit114 19 53103189 to 53103519 330 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology-114
Gm30381 19 53127579 to 53131241 3662 + lncRNA gene predicted gene, 30381
Tssr156938 19 53128698 to 53128708 10 + TSS region transcription start site region 156938
Tssr156939 19 53131253 to 53131254 1 + TSS region transcription start site region 156939
Gm9618 19 53133413 to 53139839 6426 - lncRNA gene predicted gene 9618
Tssr156940 19 53140430 to 53140449 19 + TSS region transcription start site region 156940
Add3 19 53140443 to 53247326 106883 + protein coding gene adducin 3 (gamma)
Tssr156941 19 53140471 to 53140505 34 + TSS region transcription start site region 156941
Cpgi11052 19 53140482 to 53140790 308 CpG island CpG island 11052
Tssr156942 19 53140508 to 53140525 17 + TSS region transcription start site region 156942
Tssr156943 19 53140536 to 53140593 57 + TSS region transcription start site region 156943
Tssr156944 19 53140609 to 53140620 11 + TSS region transcription start site region 156944
Tssr156945 19 53140629 to 53140645 16 + TSS region transcription start site region 156945
Cpgi11053 19 53142091 to 53143643 1552 CpG island CpG island 11053
Tssr156946 19 53142775 to 53142778 3 + TSS region transcription start site region 156946
Tssr156947 19 53142785 to 53142803 18 + TSS region transcription start site region 156947
Tssr159806 19 53143147 to 53143177 30 - TSS region transcription start site region 159806
Gm24724 19 53159757 to 53159863 106 - snRNA gene predicted gene, 24724
Cpgi11054 19 53184385 to 53184559 174 CpG island CpG island 11054
Tssr156948 19 53184432 to 53184435 3 + TSS region transcription start site region 156948
Tssr156949 19 53185710 to 53185719 9 + TSS region transcription start site region 156949
Tssr5549 19 53185740 to 53185750 10 + TSS region transcription start site region 5549
Tssr156950 19 53185759 to 53185772 13 + TSS region transcription start site region 156950
Tssr156951 19 53185795 to 53185814 19 + TSS region transcription start site region 156951
Tssr156952 19 53185815 to 53185826 11 + TSS region transcription start site region 156952
Tssr159807 19 53188364 to 53188375 11 - TSS region transcription start site region 159807
Tssr156953 19 53194284 to 53194297 13 + TSS region transcription start site region 156953
Tssr156954 19 53194308 to 53194319 11 + TSS region transcription start site region 156954
Tssr156955 19 53194335 to 53194346 11 + TSS region transcription start site region 156955
Tssr156956 19 53194358 to 53194415 57 + TSS region transcription start site region 156956
Tssr156957 19 53194496 to 53194507 11 + TSS region transcription start site region 156957
Tssr156958 19 53194526 to 53194544 18 + TSS region transcription start site region 156958
Tssr159808 19 53195231 to 53195236 5 - TSS region transcription start site region 159808
Tssr156959 19 53195330 to 53195361 31 + TSS region transcription start site region 156959
Tssr156960 19 53195469 to 53195485 16 + TSS region transcription start site region 156960
Tssr156961 19 53198000 to 53198008 8 + TSS region transcription start site region 156961
Tssr156962 19 53198020 to 53198025 5 + TSS region transcription start site region 156962
Tssr156963 19 53198033 to 53198058 25 + TSS region transcription start site region 156963
Tssr159809 19 53199140 to 53199145 5 - TSS region transcription start site region 159809
1700001K23Rik 19 53248736 to 53255205 6469 - lncRNA gene RIKEN cDNA 1700001K23 gene
Tssr156964 19 53251249 to 53251285 36 + TSS region transcription start site region 156964
Tssr159810 19 53255185 to 53255196 11 - TSS region transcription start site region 159810
Gm36339 19 53265747 to 53266864 1117 + pseudogene predicted gene, 36339
Cpgi11055 19 53273988 to 53274407 419 CpG island CpG island 11055
Tssr159811 19 53283904 to 53283915 11 - TSS region transcription start site region 159811
D19Mit75 19 53309971 to 53310067 96 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 75
Cpgi11056 19 53310323 to 53312018 1695 CpG island CpG island 11056
Tssr156965 19 53310420 to 53310447 27 + TSS region transcription start site region 156965
Tssr156966 19 53310458 to 53310463 5 + TSS region transcription start site region 156966
Tssr156967 19 53310475 to 53310494 19 + TSS region transcription start site region 156967
Tssr156968 19 53310495 to 53310552 57 + TSS region transcription start site region 156968
Mxi1 19 53310506 to 53375810 65304 + protein coding gene MAX interactor 1, dimerization protein
Tssr156969 19 53310570 to 53310579 9 + TSS region transcription start site region 156969
Tssr156970 19 53310858 to 53310871 13 + TSS region transcription start site region 156970
Tssr156971 19 53311375 to 53311391 16 + TSS region transcription start site region 156971
Cpgi11057 19 53312452 to 53314612 2160 CpG island CpG island 11057
Tssr159812 19 53313253 to 53313270 17 - TSS region transcription start site region 159812
Tssr159813 19 53313292 to 53313310 18 - TSS region transcription start site region 159813
Tssr156972 19 53313424 to 53313435 11 + TSS region transcription start site region 156972
Gm30541 19 53317356 to 53326998 9642 - lncRNA gene predicted gene, 30541
Tssr159814 19 53318557 to 53318607 50 - TSS region transcription start site region 159814
Tssr5550 19 53319264 to 53319266 2 + TSS region transcription start site region 5550
Cpgi11058 19 53325554 to 53326096 542 CpG island CpG island 11058
Cpgi11059 19 53329122 to 53330574 1452 CpG island CpG island 11059
Tssr156973 19 53329424 to 53329478 54 + TSS region transcription start site region 156973
Tssr156974 19 53329507 to 53329518 11 + TSS region transcription start site region 156974
Tssr156975 19 53352887 to 53352893 6 + TSS region transcription start site region 156975
Tssr156976 19 53357243 to 53357252 9 + TSS region transcription start site region 156976
Gm10197 19 53371566 to 53371766 200 - protein coding gene predicted gene 10197
Smndc1 19 53379214 to 53390573 11359 - protein coding gene survival motor neuron domain containing 1
Tssr159815 19 53389671 to 53389675 4 - TSS region transcription start site region 159815
Cpgi11060 19 53389796 to 53391110 1314 CpG island CpG island 11060
Tssr159816 19 53390535 to 53390544 9 - TSS region transcription start site region 159816
Tssr159817 19 53390550 to 53390555 5 - TSS region transcription start site region 159817
Tssr159818 19 53390559 to 53390581 22 - TSS region transcription start site region 159818
Tssr159819 19 53390589 to 53390622 33 - TSS region transcription start site region 159819
Tssr156977 19 53390773 to 53390820 47 + TSS region transcription start site region 156977
8030456M14Rik 19 53390788 to 53391796 1008 unclassified gene RIKEN cDNA 8030456M14 gene
Tssr156978 19 53390881 to 53390930 49 + TSS region transcription start site region 156978
Tssr156979 19 53421229 to 53421233 4 + TSS region transcription start site region 156979
Tssr156980 19 53421314 to 53421328 14 + TSS region transcription start site region 156980
Tssr156981 19 53421374 to 53421386 12 + TSS region transcription start site region 156981
Tssr156982 19 53421619 to 53421647 28 + TSS region transcription start site region 156982
Tssr159820 19 53423343 to 53423362 19 - TSS region transcription start site region 159820
Cpgi11061 19 53423478 to 53423905 427 CpG island CpG island 11061
Tssr159821 19 53424228 to 53424236 8 - TSS region transcription start site region 159821
Tssr156983 19 53424412 to 53424417 5 + TSS region transcription start site region 156983
Tssr159822 19 53424728 to 53424744 16 - TSS region transcription start site region 159822
Cpgi11062 19 53424756 to 53425026 270 CpG island CpG island 11062
Tssr159823 19 53424787 to 53424801 14 - TSS region transcription start site region 159823
D19Mit54 19 53439387 to 53439513 126 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 54
Mirt1 19 53441212 to 53464796 23584 - lincRNA gene myocardial infarction associated transcript 1
Tssr159824 19 53441471 to 53441479 8 - TSS region transcription start site region 159824
Tssr159825 19 53451518 to 53451534 16 - TSS region transcription start site region 159825
Tssr159826 19 53460248 to 53460262 14 - TSS region transcription start site region 159826
Tssr156984 19 53460610 to 53460654 44 + TSS region transcription start site region 156984
4833407H14Rik 19 53460631 to 53462723 2092 + lincRNA gene RIKEN cDNA 4833407H14 gene
Tssr159827 19 53464721 to 53464833 112 - TSS region transcription start site region 159827
Gm30826 19 53488977 to 53492649 3672 - lncRNA gene predicted gene, 30826
Cpgi11063 19 53500398 to 53500787 389 CpG island CpG island 11063
Cpgi11064 19 53528650 to 53530195 1545 CpG island CpG island 11064
Tssr159828 19 53528872 to 53528881 9 - TSS region transcription start site region 159828
Tssr159829 19 53528895 to 53528909 14 - TSS region transcription start site region 159829
Tssr159830 19 53528961 to 53528989 28 - TSS region transcription start site region 159830
Tssr156985 19 53529100 to 53529105 5 + TSS region transcription start site region 156985
Tssr156986 19 53529137 to 53529151 14 + TSS region transcription start site region 156986
Dusp5 19 53529318 to 53541322 12004 + protein coding gene dual specificity phosphatase 5
Tssr156987 19 53533810 to 53533821 11 + TSS region transcription start site region 156987
Tssr156988 19 53533824 to 53533839 15 + TSS region transcription start site region 156988
Tssr156989 19 53533901 to 53533912 11 + TSS region transcription start site region 156989
Tssr156990 19 53533926 to 53533942 16 + TSS region transcription start site region 156990
Tssr156991 19 53537460 to 53537479 19 + TSS region transcription start site region 156991
Tssr156992 19 53537490 to 53537506 16 + TSS region transcription start site region 156992
Tssr156993 19 53537515 to 53537531 16 + TSS region transcription start site region 156993
Tssr156994 19 53537674 to 53537680 6 + TSS region transcription start site region 156994
Tssr156995 19 53539373 to 53539391 18 + TSS region transcription start site region 156995
Tssr156996 19 53539507 to 53539520 13 + TSS region transcription start site region 156996
Tssr156997 19 53539620 to 53539638 18 + TSS region transcription start site region 156997
Tssr156998 19 53539703 to 53539718 15 + TSS region transcription start site region 156998
Tssr159831 19 53541118 to 53541125 7 - TSS region transcription start site region 159831
Tssr156999 19 53547929 to 53547941 12 + TSS region transcription start site region 156999
Tssr159832 19 53573319 to 53573331 12 - TSS region transcription start site region 159832
Nutf2-ps1 19 53588204 to 53589067 863 - pseudogene nuclear transport factor 2, pseudogene 1
Cpgi11065 19 53599875 to 53601543 1668 CpG island CpG island 11065
Tssr159833 19 53600005 to 53600013 8 - TSS region transcription start site region 159833
Tssr157000 19 53600160 to 53600174 14 + TSS region transcription start site region 157000
Tssr157001 19 53600377 to 53600435 58 + TSS region transcription start site region 157001
Smc3 19 53600396 to 53645831 45435 + protein coding gene structural maintenance of chromosomes 3
Tssr157002 19 53600449 to 53600478 29 + TSS region transcription start site region 157002
Tssr157003 19 53609367 to 53609371 4 + TSS region transcription start site region 157003
Tssr157004 19 53618891 to 53618896 5 + TSS region transcription start site region 157004
Tssr157005 19 53621826 to 53621861 35 + TSS region transcription start site region 157005
Tssr157006 19 53623045 to 53623058 13 + TSS region transcription start site region 157006
Tssr157007 19 53623149 to 53623186 37 + TSS region transcription start site region 157007
Tssr157008 19 53633987 to 53634005 18 + TSS region transcription start site region 157008
Tssr157009 19 53639327 to 53639369 42 + TSS region transcription start site region 157009
Tssr157010 19 53660987 to 53661003 16 + TSS region transcription start site region 157010
Gm46653 19 53673178 to 53675863 2685 - lncRNA gene predicted gene, 46653
Cpgi11066 19 53676228 to 53677711 1483 CpG island CpG island 11066
Tssr157011 19 53676373 to 53676416 43 + TSS region transcription start site region 157011
Tssr157012 19 53677286 to 53677291 5 + TSS region transcription start site region 157012
Rbm20 19 53677306 to 53867080 189774 + protein coding gene RNA binding motif protein 20
Tssr157013 19 53677327 to 53677340 13 + TSS region transcription start site region 157013
Tssr157014 19 53677363 to 53677379 16 + TSS region transcription start site region 157014
Tssr157015 19 53677395 to 53677425 30 + TSS region transcription start site region 157015