Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:5122982-5423000

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm30840 19 5118844 to 5126127 7283 + lncRNA gene predicted gene, 30840
Gm5242 19 5131740 to 5132972 1232 - pseudogene predicted gene 5242
Pacs1 19 5133688 to 5273119 139431 - protein coding gene phosphofurin acidic cluster sorting protein 1
Tssr157556 19 5134361 to 5134366 5 - TSS region transcription start site region 157556
Tssr157557 19 5158599 to 5158603 4 - TSS region transcription start site region 157557
Gm27468 19 5201198 to 5201303 105 - miRNA gene predicted gene, 27468
Tssr157558 19 5205804 to 5205813 9 - TSS region transcription start site region 157558
D430030G11Rik 19 5212479 to 5215044 2565 unclassified non-coding RNA gene RIKEN cDNA D430030G11 gene
D19Dcr3 19 5222811 to 5222908 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 3
Cpgi10438 19 5272247 to 5273585 1338 CpG island CpG island 10438
Tssr157559 19 5272892 to 5272901 9 - TSS region transcription start site region 157559
Tssr157560 19 5272982 to 5273000 18 - TSS region transcription start site region 157560
Tssr157561 19 5273007 to 5273037 30 - TSS region transcription start site region 157561
Tssr157562 19 5273068 to 5273079 11 - TSS region transcription start site region 157562
Tssr157563 19 5273080 to 5273129 49 - TSS region transcription start site region 157563
Tssr157564 19 5273265 to 5273290 25 - TSS region transcription start site region 157564
Sf3b2 19 5273923 to 5295455 21532 - protein coding gene splicing factor 3b, subunit 2
Tssr154393 19 5286803 to 5286822 19 + TSS region transcription start site region 154393
Tssr154394 19 5286880 to 5286924 44 + TSS region transcription start site region 154394
Tssr157565 19 5293188 to 5293198 10 - TSS region transcription start site region 157565
Tssr157566 19 5293275 to 5293289 14 - TSS region transcription start site region 157566
Cpgi10439 19 5295030 to 5295853 823 CpG island CpG island 10439
Tssr157567 19 5295397 to 5295430 33 - TSS region transcription start site region 157567
Tssr154395 19 5298276 to 5298287 11 + TSS region transcription start site region 154395
Tssr154396 19 5298302 to 5298357 55 + TSS region transcription start site region 154396
Cpgi10440 19 5298303 to 5298516 213 CpG island CpG island 10440
Gal3st3 19 5298331 to 5308738 10407 + protein coding gene galactose-3-O-sulfotransferase 3
Tssr154397 19 5298364 to 5298367 3 + TSS region transcription start site region 154397
Tssr157568 19 5302500 to 5302502 2 - TSS region transcription start site region 157568
Gm42064 19 5305873 to 5306997 1124 - lncRNA gene predicted gene, 42064
Cpgi10441 19 5306679 to 5308221 1542 CpG island CpG island 10441
Tssr157569 19 5307071 to 5307114 43 - TSS region transcription start site region 157569
Tssr157570 19 5307508 to 5307528 20 - TSS region transcription start site region 157570
Tssr154398 19 5308252 to 5308272 20 + TSS region transcription start site region 154398
Tssr154399 19 5308302 to 5308313 11 + TSS region transcription start site region 154399
Tssr154400 19 5308367 to 5308371 4 + TSS region transcription start site region 154400
Nstr1 19 5321112 to 5321310 198 QTL nerve sheath tumor resistance QTL 1
D19Mit59 19 5321112 to 5321310 198 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 59
Cpgi10442 19 5323944 to 5324095 151 CpG island CpG island 10442
Gm7074 19 5324333 to 5325253 920 + pseudogene predicted gene 7074
Tssr154401 19 5328000 to 5328017 17 + TSS region transcription start site region 154401
Tssr154402 19 5328049 to 5328061 12 + TSS region transcription start site region 154402
Tssr154403 19 5335619 to 5335630 11 + TSS region transcription start site region 154403
Tssr154404 19 5335644 to 5335651 7 + TSS region transcription start site region 154404
Catsper1 19 5335741 to 5344153 8412 + protein coding gene cation channel, sperm associated 1
Cst6 19 5344705 to 5349574 4869 - protein coding gene cystatin E/M
Cpgi10443 19 5349104 to 5349507 403 CpG island CpG island 10443
Tssr157571 19 5349340 to 5349358 18 - TSS region transcription start site region 157571
Banf1 19 5364641 to 5366645 2004 - protein coding gene barrier to autointegration factor 1
Tssr157572 19 5364802 to 5364825 23 - TSS region transcription start site region 157572
Tssr157573 19 5364859 to 5364878 19 - TSS region transcription start site region 157573
Tssr157574 19 5364893 to 5364918 25 - TSS region transcription start site region 157574
Cpgi10444 19 5365701 to 5367695 1994 CpG island CpG island 10444
Tssr157575 19 5366253 to 5366264 11 - TSS region transcription start site region 157575
Tssr157576 19 5366269 to 5366280 11 - TSS region transcription start site region 157576
Tssr157577 19 5366285 to 5366378 93 - TSS region transcription start site region 157577
Tssr154405 19 5366387 to 5366421 34 + TSS region transcription start site region 154405
Tssr157578 19 5366598 to 5366611 13 - TSS region transcription start site region 157578
Tssr157579 19 5366626 to 5366663 37 - TSS region transcription start site region 157579
Tssr154406 19 5366764 to 5366851 87 + TSS region transcription start site region 154406
Eif1ad 19 5366813 to 5371511 4698 + protein coding gene eukaryotic translation initiation factor 1A domain containing
Tssr154407 19 5366948 to 5366962 14 + TSS region transcription start site region 154407
Tssr154408 19 5366965 to 5367037 72 + TSS region transcription start site region 154408
Sart1 19 5377523 to 5388703 11180 - protein coding gene squamous cell carcinoma antigen recognized by T cells 1
Cpgi10445 19 5387749 to 5389130 1381 CpG island CpG island 10445
D330050I16Rik 19 5388336 to 5390069 1733 + lncRNA gene RIKEN cDNA D330050I16 gene
Tssr157580 19 5388629 to 5388641 12 - TSS region transcription start site region 157580
Tssr157581 19 5388656 to 5388691 35 - TSS region transcription start site region 157581
Tssr157582 19 5388726 to 5388735 9 - TSS region transcription start site region 157582
Tssr154409 19 5388814 to 5388831 17 + TSS region transcription start site region 154409
Tssr154410 19 5388838 to 5388885 47 + TSS region transcription start site region 154410
Tssr157583 19 5389924 to 5389942 18 - TSS region transcription start site region 157583
Tsga10ip 19 5390049 to 5394401 4352 - protein coding gene testis specific 10 interacting protein
Tssr157584 19 5394335 to 5394383 48 - TSS region transcription start site region 157584
Tssr157585 19 5394385 to 5394402 17 - TSS region transcription start site region 157585
Tssr154411 19 5394632 to 5394637 5 + TSS region transcription start site region 154411
Tssr157586 19 5402460 to 5402484 24 - TSS region transcription start site region 157586
Tssr157587 19 5402493 to 5402528 35 - TSS region transcription start site region 157587
Tssr154412 19 5406089 to 5406093 4 + TSS region transcription start site region 154412
Tssr157588 19 5406601 to 5406606 5 - TSS region transcription start site region 157588
Tssr5410 19 5406796 to 5406836 40 + TSS region transcription start site region 5410
4930481A15Rik 19 5406815 to 5422847 16032 + antisense lncRNA gene RIKEN cDNA 4930481A15 gene
Tssr154413 19 5406864 to 5406880 16 + TSS region transcription start site region 154413
Tssr157589 19 5408432 to 5408468 36 - TSS region transcription start site region 157589
Tssr154414 19 5414888 to 5414912 24 + TSS region transcription start site region 154414
Tssr154415 19 5414974 to 5414978 4 + TSS region transcription start site region 154415
Gm6293 19 5415565 to 5415759 194 - pseudogene predicted pseudogene 6293
Cpgi10446 19 5415636 to 5415867 231 CpG island CpG island 10446
Tssr157590 19 5415789 to 5415793 4 - TSS region transcription start site region 157590
Drap1 19 5422805 to 5424979 2174 - protein coding gene Dr1 associated protein 1 (negative cofactor 2 alpha)