Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4988826-5091134

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58 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Npas4 19 4984355 to 4989971 5616 - protein coding gene neuronal PAS domain protein 4
Cpgi10421 19 4989512 to 4990080 568 CpG island CpG island 10421
Tssr157534 19 4989964 to 4989972 8 - TSS region transcription start site region 157534
Cpgi10422 19 4990793 to 4991016 223 CpG island CpG island 10422
Tssr157535 19 4993710 to 4993725 15 - TSS region transcription start site region 157535
Cpgi10423 19 5001654 to 5002437 783 CpG island CpG island 10423
Tssr157536 19 5001771 to 5001783 12 - TSS region transcription start site region 157536
Tssr157537 19 5001789 to 5001814 25 - TSS region transcription start site region 157537
Tssr157538 19 5001847 to 5001875 28 - TSS region transcription start site region 157538
D19Dcr1 19 5011606 to 5011701 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 1
D19Mit29 19 5011610 to 5011804 194 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 29
Gm42063 19 5017356 to 5021765 4409 - lncRNA gene predicted gene, 42063
Cpgi10424 19 5023490 to 5024668 1178 CpG island CpG island 10424
Tssr157539 19 5023926 to 5023979 53 - TSS region transcription start site region 157539
Slc29a2 19 5024006 to 5031971 7965 + protein coding gene solute carrier family 29 (nucleoside transporters), member 2
Tssr154374 19 5024042 to 5024155 113 + TSS region transcription start site region 154374
Tssr154375 19 5024162 to 5024182 20 + TSS region transcription start site region 154375
Gm30581 19 5037817 to 5038805 988 - lncRNA gene predicted gene, 30581
Cpgi10425 19 5038232 to 5039892 1660 CpG island CpG island 10425
n-TSgct6 19 5038304 to 5038385 81 - tRNA gene nuclear encoded tRNA serine 6 (anticodon GCT)
B4gat1 19 5038826 to 5041134 2308 + protein coding gene beta-1,4-glucuronyltransferase 1
Tssr154376 19 5038847 to 5038938 91 + TSS region transcription start site region 154376
Cpgi10426 19 5041111 to 5041763 652 CpG island CpG island 10426
Tssr154377 19 5041337 to 5041416 79 + TSS region transcription start site region 154377
Brms1 19 5041404 to 5049917 8513 + protein coding gene breast cancer metastasis-suppressor 1
Tssr154378 19 5041515 to 5041533 18 + TSS region transcription start site region 154378
Tssr5409 19 5050447 to 5050466 19 + TSS region transcription start site region 5409
Rin1 19 5050481 to 5057071 6590 + protein coding gene Ras and Rab interactor 1
Tssr154379 19 5050807 to 5050858 51 + TSS region transcription start site region 154379
Cpgi10427 19 5051105 to 5051320 215 CpG island CpG island 10427
Cpgi10428 19 5067751 to 5069061 1310 CpG island CpG island 10428
Tssr154380 19 5068077 to 5068085 8 + TSS region transcription start site region 154380
Cd248 19 5068078 to 5070637 2559 + protein coding gene CD248 antigen, endosialin
Tssr154381 19 5068087 to 5068098 11 + TSS region transcription start site region 154381
Tssr154382 19 5068101 to 5068115 14 + TSS region transcription start site region 154382
Tssr154383 19 5068117 to 5068122 5 + TSS region transcription start site region 154383
Tssr154384 19 5069264 to 5069286 22 + TSS region transcription start site region 154384
Tssr154385 19 5069431 to 5069446 15 + TSS region transcription start site region 154385
Tssr154386 19 5069690 to 5069705 15 + TSS region transcription start site region 154386
Tssr154387 19 5069737 to 5069753 16 + TSS region transcription start site region 154387
Tssr154388 19 5069824 to 5069835 11 + TSS region transcription start site region 154388
Gm30627 19 5070830 to 5072120 1290 - lncRNA gene predicted gene, 30627
Cpgi10429 19 5071527 to 5071768 241 CpG island CpG island 10429
Cpgi10430 19 5071918 to 5072417 499 CpG island CpG island 10430
Tssr157540 19 5072074 to 5072090 16 - TSS region transcription start site region 157540
Tssr157541 19 5072109 to 5072129 20 - TSS region transcription start site region 157541
Gm46658 19 5072130 to 5075259 3129 + lncRNA gene predicted gene, 46658
Tssr157542 19 5072497 to 5072523 26 - TSS region transcription start site region 157542
Tmem151a 19 5079337 to 5085477 6140 - protein coding gene transmembrane protein 151A
Cpgi10431 19 5081726 to 5083002 1276 CpG island CpG island 10431
D19Dcr2 19 5084596 to 5084699 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 2
Cpgi10432 19 5084832 to 5085981 1149 CpG island CpG island 10432
Tssr157543 19 5085483 to 5085501 18 - TSS region transcription start site region 157543
Cpgi10433 19 5087728 to 5089033 1305 CpG island CpG island 10433
Tssr154389 19 5088534 to 5088575 41 + TSS region transcription start site region 154389
Yif1a 19 5088538 to 5092879 4341 + protein coding gene Yip1 interacting factor homolog A (S. cerevisiae)
Tssr154390 19 5088580 to 5088591 11 + TSS region transcription start site region 154390
Tssr154391 19 5088648 to 5088655 7 + TSS region transcription start site region 154391