Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:47734441-55213113

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460 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
W3q14 19 22335962 to 53923073 31587111 QTL weight 3 weeks QTL 14
stn 19 32639023 to 47909549 15270526 heritable phenotypic marker stunted
Lfibq11 19 47144139 to 47864318 720179 QTL liver fibrosis QTL 11
Sfr1 19 47731756 to 47735588 3832 + protein coding gene SWI5 dependent recombination repair 1
Cfap43 19 47735267 to 47837837 102570 - protein coding gene cilia and flagella associated protein 43
Mir8090 19 47755022 to 47755157 135 - miRNA gene microRNA 8090
Cpgi11036 19 47755641 to 47755940 299 CpG island CpG island 11036
Cpgi11037 19 47786755 to 47787115 360 CpG island CpG island 11037
Tssr159755 19 47787107 to 47787129 22 - TSS region transcription start site region 159755
D19Dcr56 19 47788541 to 47788651 110 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 56
Cpgi11038 19 47813125 to 47813310 185 CpG island CpG island 11038
D19Mit83 19 47831148 to 47831274 126 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 83
Tssr156888 19 47834936 to 47834945 9 + TSS region transcription start site region 156888
Tssr159756 19 47835939 to 47835982 43 - TSS region transcription start site region 159756
Cpgi11039 19 47837047 to 47837736 689 CpG island CpG island 11039
Tssr159757 19 47837262 to 47837275 13 - TSS region transcription start site region 159757
Tssr159758 19 47837291 to 47837305 14 - TSS region transcription start site region 159758
Tssr159759 19 47837378 to 47837424 46 - TSS region transcription start site region 159759
Gm30021 19 47853111 to 47854772 1661 - lncRNA gene predicted gene, 30021
Tssr156889 19 47854103 to 47854115 12 + TSS region transcription start site region 156889
Tssr156890 19 47854246 to 47854274 28 + TSS region transcription start site region 156890
Cpgi11040 19 47854664 to 47855452 788 CpG island CpG island 11040
Tssr159760 19 47854910 to 47854921 11 - TSS region transcription start site region 159760
Gsto1 19 47854973 to 47864790 9817 + protein coding gene glutathione S-transferase omega 1
Tssr156891 19 47854995 to 47855013 18 + TSS region transcription start site region 156891
Tssr156892 19 47855018 to 47855021 3 + TSS region transcription start site region 156892
Tssr156893 19 47855022 to 47855047 25 + TSS region transcription start site region 156893
Tssr156894 19 47855207 to 47855225 18 + TSS region transcription start site region 156894
Tssr159761 19 47855292 to 47855328 36 - TSS region transcription start site region 159761
Tssr156895 19 47857849 to 47857893 44 + TSS region transcription start site region 156895
Tssr159762 19 47857887 to 47857896 9 - TSS region transcription start site region 159762
Tssr156896 19 47857991 to 47858007 16 + TSS region transcription start site region 156896
Tssr159763 19 47857992 to 47858028 36 - TSS region transcription start site region 159763
Tssr159764 19 47858034 to 47858064 30 - TSS region transcription start site region 159764
Tssr156897 19 47859421 to 47859510 89 + TSS region transcription start site region 156897
Tssr159765 19 47859461 to 47859485 24 - TSS region transcription start site region 159765
Tssr159766 19 47859493 to 47859539 46 - TSS region transcription start site region 159766
Tssr156898 19 47860737 to 47860748 11 + TSS region transcription start site region 156898
Tssr156899 19 47860763 to 47860771 8 + TSS region transcription start site region 156899
Tssr156900 19 47863375 to 47863386 11 + TSS region transcription start site region 156900
Tssr159767 19 47863401 to 47863426 25 - TSS region transcription start site region 159767
Tssr156901 19 47863406 to 47863418 12 + TSS region transcription start site region 156901
Tssr159768 19 47863465 to 47863489 24 - TSS region transcription start site region 159768
Tssr156902 19 47864291 to 47864306 15 + TSS region transcription start site region 156902
Tssr156903 19 47864316 to 47864325 9 + TSS region transcription start site region 156903
Tssr156904 19 47864345 to 47864350 5 + TSS region transcription start site region 156904
Tssr156905 19 47864388 to 47864403 15 + TSS region transcription start site region 156905
Tssr159769 19 47864414 to 47864432 18 - TSS region transcription start site region 159769
Tssr156906 19 47864421 to 47864430 9 + TSS region transcription start site region 156906
Tssr159770 19 47864437 to 47864462 25 - TSS region transcription start site region 159770
Tssr156907 19 47864440 to 47864488 48 + TSS region transcription start site region 156907
Tssr159771 19 47864505 to 47864516 11 - TSS region transcription start site region 159771
Tssr156908 19 47864508 to 47864517 9 + TSS region transcription start site region 156908
Tssr156909 19 47864534 to 47864541 7 + TSS region transcription start site region 156909
Tssr156910 19 47864563 to 47864586 23 + TSS region transcription start site region 156910
Tssr156911 19 47864616 to 47864638 22 + TSS region transcription start site region 156911
Tssr159772 19 47864639 to 47864658 19 - TSS region transcription start site region 159772
Tssr156912 19 47864640 to 47864656 16 + TSS region transcription start site region 156912
Tssr156913 19 47864708 to 47864717 9 + TSS region transcription start site region 156913
Tssr159773 19 47864779 to 47864789 10 - TSS region transcription start site region 159773
Tssr159774 19 47864952 to 47864958 6 - TSS region transcription start site region 159774
Cpgi11041 19 47865292 to 47865936 644 CpG island CpG island 11041
Tssr156914 19 47865516 to 47865529 13 + TSS region transcription start site region 156914
Tssr156915 19 47865543 to 47865548 5 + TSS region transcription start site region 156915
Gsto2 19 47865545 to 47886305 20760 + protein coding gene glutathione S-transferase omega 2
Tssr156916 19 47865573 to 47865581 8 + TSS region transcription start site region 156916
Tssr156917 19 47865777 to 47865808 31 + TSS region transcription start site region 156917
Tssr156918 19 47865815 to 47865835 20 + TSS region transcription start site region 156918
Itprip 19 47894593 to 47919519 24926 - protein coding gene inositol 1,4,5-triphosphate receptor interacting protein
Tssr159775 19 47900663 to 47900695 32 - TSS region transcription start site region 159775
Acsns1 19 47909441 to 55038113 7128672 QTL Angiostrongylus costaricensis nematode susceptibility 1
D19Mit91 19 47909441 to 47909549 108 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 91
Nobq2 19 47909441 to 47909549 108 QTL New Zealand obese QTL 2
Tssr159776 19 47913882 to 47913886 4 - TSS region transcription start site region 159776
Tssr159777 19 47914506 to 47914518 12 - TSS region transcription start site region 159777
Tssr156919 19 47915557 to 47915564 7 + TSS region transcription start site region 156919
Cpgi11042 19 47918689 to 47919470 781 CpG island CpG island 11042
Tssr156920 19 47918706 to 47918741 35 + TSS region transcription start site region 156920
Tssr159778 19 47918921 to 47918930 9 - TSS region transcription start site region 159778
Gm22240 19 47919192 to 47919273 81 - miRNA gene predicted gene, 22240
Tssr159779 19 47919193 to 47919235 42 - TSS region transcription start site region 159779
Tssr159780 19 47919237 to 47919260 23 - TSS region transcription start site region 159780
Tssr159781 19 47919269 to 47919305 36 - TSS region transcription start site region 159781
Cpgi11043 19 47937436 to 47938232 796 CpG island CpG island 11043
Tssr156921 19 47937648 to 47937696 48 + TSS region transcription start site region 156921
Cfap58 19 47937712 to 48035379 97667 + protein coding gene cilia and flagella associated protein 58
Cpgi11044 19 47947148 to 47947384 236 CpG island CpG island 11044
Cpgi11045 19 47962320 to 47962601 281 CpG island CpG island 11045
D19Dcr57 19 47981204 to 47981299 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 57
D19Mit4 19 48032464 to 48032661 197 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 4
Tssr5545 19 48063563 to 48063566 3 + TSS region transcription start site region 5545
Tssr159782 19 48127390 to 48127393 3 - TSS region transcription start site region 159782
D19Dcr58 19 48180641 to 48180752 111 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 58
Cpgi11046 19 48204015 to 48204417 402 CpG island CpG island 11046
Cpgi11047 19 48204707 to 48206855 2148 CpG island CpG island 11047
Tssr156922 19 48205477 to 48205511 34 + TSS region transcription start site region 156922
Tssr156923 19 48205513 to 48205525 12 + TSS region transcription start site region 156923
Sorcs3 19 48206025 to 48805505 599480 + protein coding gene sortilin-related VPS10 domain containing receptor 3
Tssr156924 19 48206133 to 48206163 30 + TSS region transcription start site region 156924
D19Dcr59 19 48239596 to 48239705 109 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 59
Gm23857 19 48240535 to 48240645 110 - rRNA gene predicted gene, 23857
1700021N20Rik 19 48240773 to 48241113 340 unclassified gene RIKEN cDNA 1700021N20 gene
D19Dcr60 19 48246306 to 48246408 102 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 60
D19Dcr61 19 48297452 to 48297547 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 61
Tssr156925 19 48313346 to 48313351 5 + TSS region transcription start site region 156925
Tssr156926 19 48332176 to 48332184 8 + TSS region transcription start site region 156926
D19Dcr62 19 48394463 to 48394561 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 62
D19Dcr63 19 48417106 to 48417207 101 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 63
D19Mit74 19 48534172 to 48534264 92 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 74
Tssr5546 19 48769499 to 48769502 3 + TSS region transcription start site region 5546
4930535F04Rik 19 48990468 to 48991980 1512 unclassified gene RIKEN cDNA 4930535F04 gene
D19Dcr64 19 49142478 to 49142573 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 64
Tssr5547 19 49144734 to 49144738 4 - TSS region transcription start site region 5547
Tssr159783 19 49368310 to 49368316 6 - TSS region transcription start site region 159783
Gm6975 19 49709521 to 49710153 632 - pseudogene predicted gene 6975
Gm27935 19 49709794 to 49709872 78 - miRNA gene predicted gene, 27935
Siah1-ps1 19 49868272 to 49870143 1871 + pseudogene siah E3 ubiquitin protein ligase 1, pseudogene 1
D19Mit3 19 49953729 to 49953927 198 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 3
D19Mit58 19 50003719 to 50003859 140 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 58
Lith2 19 50003719 to 50003859 140 QTL lithogenic gene 2
Rpl13a-ps1 19 50030124 to 50030735 611 - pseudogene ribosomal protein 13A, pseudogene 1
Tssr159784 19 50030519 to 50030529 10 - TSS region transcription start site region 159784
Tssr159785 19 50030751 to 50030767 16 - TSS region transcription start site region 159785
D19Mit122 19 50128109 to 50128231 122 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 122
Sorcs1 19 50143299 to 50678646 535347 - protein coding gene sortilin-related VPS10 domain containing receptor 1
Gm27749 19 50144491 to 50144615 124 + miRNA gene predicted gene, 27749
Gm45352 19 50147014 to 50169777 22763 + antisense lncRNA gene predicted gene 45352
D19Dcr14 19 50249163 to 50249260 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 14
Tssr156927 19 50252575 to 50252608 33 + TSS region transcription start site region 156927
D19Mit25 19 50418177 to 50418326 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 25
Tssr159786 19 50455794 to 50455797 3 - TSS region transcription start site region 159786
Tssr159787 19 50573174 to 50573178 4 - TSS region transcription start site region 159787
D19Mit1001 19 50603245 to 50603362 117 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 1001
Tssr159788 19 50620216 to 50620222 6 - TSS region transcription start site region 159788
Gm26629 19 50677406 to 50778662 101256 + lincRNA gene predicted gene, 26629
Cpgi11048 19 50677882 to 50679161 1279 CpG island CpG island 11048
Tssr159789 19 50678577 to 50678586 9 - TSS region transcription start site region 159789
Tssr159790 19 50678642 to 50678702 60 - TSS region transcription start site region 159790
Tssr159791 19 50678712 to 50678733 21 - TSS region transcription start site region 159791
Tssr156928 19 50678929 to 50678936 7 + TSS region transcription start site region 156928
Tssr159792 19 50713635 to 50713649 14 - TSS region transcription start site region 159792
D19Mit70 19 50717374 to 50717567 193 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 70
D19Dcr15 19 50730164 to 50730259 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 15
Gm25659 19 50812324 to 50812360 36 + rRNA gene predicted gene, 25659
Stnn 19 50963514 to 50963662 148 QTL striatal neuron number
D19Mit123 19 50963514 to 50963662 148 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 123
Led3 19 51099940 to 59135440 8035500 QTL late embryonic death 3
D19Mit49 19 51099940 to 51100073 133 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 49
Tssr159793 19 51142678 to 51142695 17 - TSS region transcription start site region 159793
D19Dcr16 19 51229976 to 51230084 108 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 16
Gm25644 19 51239690 to 51239796 106 - snRNA gene predicted gene, 25644
D19Dcr17 19 51485500 to 51485595 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 17
Tgq29 19 51608348 to 51608348 0 QTL triglyceride QTL 29
D19Dcr18 19 51771411 to 51771506 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 18
D19Dcr19 19 51788772 to 51788875 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 19
Tssr156929 19 51792200 to 51792203 3 + TSS region transcription start site region 156929
Rpl31-ps18 19 51792226 to 51792602 376 + pseudogene ribosomal protein L31, pseudogene 18
Gm4115 19 51972994 to 51974073 1079 - pseudogene predicted gene 4115
D19Dcr20 19 52069459 to 52069563 104 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 20
Ins1 19 52264297 to 52265015 718 + protein coding gene insulin I
Tssr156930 19 52264444 to 52264455 11 + TSS region transcription start site region 156930
Tssr5548 19 52264633 to 52264644 11 + TSS region transcription start site region 5548
Tssr156931 19 52264945 to 52264970 25 + TSS region transcription start site region 156931
Tssr159794 19 52264950 to 52264956 6 - TSS region transcription start site region 159794
D19Dcr21 19 52339619 to 52339716 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 21
Gm41860 19 52372948 to 52389660 16712 - lncRNA gene predicted gene, 41860
Cpgi11049 19 52563941 to 52564363 422 CpG island CpG island 11049
Tssr156932 19 52613602 to 52613605 3 + TSS region transcription start site region 156932
AA387883 19 52923181 to 52926931 3750 + lncRNA gene expressed sequence AA387883
Gm41861 19 52943109 to 52945972 2863 - lncRNA gene predicted gene, 41861
Xpnpep1 19 52943417 to 53040214 96797 - protein coding gene X-prolyl aminopeptidase (aminopeptidase P) 1, soluble
Tssr159795 19 52953098 to 52953127 29 - TSS region transcription start site region 159795
Mir6407 19 53010656 to 53010756 100 - miRNA gene microRNA 6407
Tssr159796 19 53013449 to 53013461 12 - TSS region transcription start site region 159796
D19Mit7 19 53024074 to 53024188 114 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 7
Tssr159797 19 53028368 to 53028379 11 - TSS region transcription start site region 159797
Tssr159798 19 53032102 to 53032160 58 - TSS region transcription start site region 159798
Cpgi11050 19 53038098 to 53038859 761 CpG island CpG island 11050
Tssr159799 19 53038534 to 53038646 112 - TSS region transcription start site region 159799
Tssr159800 19 53038656 to 53038666 10 - TSS region transcription start site region 159800
Tssr156933 19 53038841 to 53038849 8 + TSS region transcription start site region 156933
Tssr159801 19 53039224 to 53039227 3 - TSS region transcription start site region 159801
Tssr159802 19 53039231 to 53039252 21 - TSS region transcription start site region 159802
Gm30234 19 53050716 to 53105907 55191 - lncRNA gene predicted gene, 30234
Tssr156934 19 53051409 to 53051423 14 + TSS region transcription start site region 156934
Cpgi11051 19 53052144 to 53052314 170 CpG island CpG island 11051
D19Mit26 19 53057422 to 53057555 133 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 26
Tssr159803 19 53058080 to 53058099 19 - TSS region transcription start site region 159803
Tssr156935 19 53062315 to 53062326 11 + TSS region transcription start site region 156935
Tssr159804 19 53064477 to 53064482 5 - TSS region transcription start site region 159804
Tssr159805 19 53076132 to 53076168 36 - TSS region transcription start site region 159805
Tssr156936 19 53076238 to 53076247 9 + TSS region transcription start site region 156936
1700054A03Rik 19 53076252 to 53084392 8140 + lincRNA gene RIKEN cDNA 1700054A03 gene
Gm41862 19 53085037 to 53088696 3659 + lncRNA gene predicted gene, 41862
Tssr156937 19 53085101 to 53085110 9 + TSS region transcription start site region 156937
D19Mit114 19 53103189 to 53103519 330 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology-114
Gm30381 19 53127579 to 53131241 3662 + lncRNA gene predicted gene, 30381
Tssr156938 19 53128698 to 53128708 10 + TSS region transcription start site region 156938
Tssr156939 19 53131253 to 53131254 1 + TSS region transcription start site region 156939
Gm9618 19 53133413 to 53139839 6426 - lncRNA gene predicted gene 9618