Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:47680022-47830157

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43 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Col17a1 19 47646341 to 47692042 45701 - protein coding gene collagen, type XVII, alpha 1
D19Dcr129 19 47680208 to 47680303 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 129
D19Dcr130 19 47680972 to 47681067 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 130
Tssr159745 19 47681487 to 47681498 11 - TSS region transcription start site region 159745
D19Dcr131 19 47682019 to 47682114 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 131
D19Dcr132 19 47682881 to 47682976 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 132
D19Dcr133 19 47683906 to 47684001 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 133
D19Dcr134 19 47684993 to 47685088 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 134
D19Dcr53 19 47685624 to 47685719 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 53
D19Dcr135 19 47687152 to 47687275 123 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 135
D19Dcr136 19 47688158 to 47688277 119 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 136
D19Dcr137 19 47688930 to 47689025 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 137
D19Dcr138 19 47689703 to 47689798 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 138
D19Dcr139 19 47690682 to 47690777 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 139
Tssr159746 19 47691848 to 47691875 27 - TSS region transcription start site region 159746
Tssr159747 19 47691884 to 47691904 20 - TSS region transcription start site region 159747
Tssr159748 19 47691909 to 47691912 3 - TSS region transcription start site region 159748
Tssr159749 19 47691946 to 47691979 33 - TSS region transcription start site region 159749
Tssr159750 19 47692007 to 47692027 20 - TSS region transcription start site region 159750
Tssr159751 19 47692028 to 47692033 5 - TSS region transcription start site region 159751
Tssr159752 19 47692042 to 47692053 11 - TSS region transcription start site region 159752
D19Dcr140 19 47692057 to 47692152 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 140
Tssr159753 19 47692089 to 47692096 7 - TSS region transcription start site region 159753
D19Dcr54 19 47696877 to 47696975 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 54
Tssr159754 19 47705624 to 47705633 9 - TSS region transcription start site region 159754
Tssr156882 19 47705783 to 47705806 23 + TSS region transcription start site region 156882
Tssr156883 19 47705941 to 47705946 5 + TSS region transcription start site region 156883
Gm26085 19 47710866 to 47710981 115 + snoRNA gene predicted gene, 26085
Gm24805 19 47714784 to 47714887 103 - snRNA gene predicted gene, 24805
D19Dcr55 19 47728013 to 47728108 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 55
Cpgi11035 19 47730886 to 47732121 1235 CpG island CpG island 11035
Tssr156884 19 47731743 to 47731768 25 + TSS region transcription start site region 156884
Sfr1 19 47731756 to 47735588 3832 + protein coding gene SWI5 dependent recombination repair 1
Tssr156885 19 47731774 to 47731797 23 + TSS region transcription start site region 156885
Tssr156886 19 47732945 to 47732950 5 + TSS region transcription start site region 156886
Tssr156887 19 47733652 to 47733665 13 + TSS region transcription start site region 156887
Cfap43 19 47735267 to 47837837 102570 - protein coding gene cilia and flagella associated protein 43
Mir8090 19 47755022 to 47755157 135 - miRNA gene microRNA 8090
Cpgi11036 19 47755641 to 47755940 299 CpG island CpG island 11036
Cpgi11037 19 47786755 to 47787115 360 CpG island CpG island 11037
Tssr159755 19 47787107 to 47787129 22 - TSS region transcription start site region 159755
D19Dcr56 19 47788541 to 47788651 110 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 56
Cpgi11038 19 47813125 to 47813310 185 CpG island CpG island 11038