Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:47653346-48973351

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173 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
stn 19 32639023 to 47909549 15270526 heritable phenotypic marker stunted
Lfibq11 19 47144139 to 47864318 720179 QTL liver fibrosis QTL 11
Col17a1 19 47646341 to 47692042 45701 - protein coding gene collagen, type XVII, alpha 1
D19Dcr105 19 47653520 to 47653615 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 105
D19Dcr106 19 47654746 to 47654841 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 106
D19Dcr107 19 47655599 to 47655694 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 107
D19Dcr108 19 47656623 to 47656718 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 108
D19Dcr109 19 47657599 to 47657695 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 109
D19Dcr110 19 47659133 to 47659228 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 110
D19Dcr111 19 47660039 to 47660143 104 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 111
D19Dcr112 19 47660989 to 47661084 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 112
D19Dcr113 19 47661799 to 47661894 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 113
D19Dcr114 19 47662953 to 47663048 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 114
D19Dcr115 19 47663527 to 47663622 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 115
D19Dcr116 19 47665201 to 47665296 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 116
D19Dcr117 19 47665555 to 47665676 121 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 117
D19Dcr118 19 47666615 to 47666710 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 118
D19Dcr119 19 47668116 to 47668253 137 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 119
D19Dcr120 19 47668561 to 47668656 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 120
Tssr159744 19 47669297 to 47669300 3 - TSS region transcription start site region 159744
D19Dcr121 19 47669781 to 47669876 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 121
D19Dcr50 19 47670550 to 47670757 207 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 50
D19Dcr49 19 47670618 to 47670720 102 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 49
D19Dcr52 19 47672145 to 47672345 200 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 52
D19Dcr51 19 47672219 to 47672314 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 51
D19Dcr122 19 47672840 to 47672937 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 122
D19Dcr123 19 47673607 to 47673702 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 123
D19Dcr124 19 47674572 to 47674667 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 124
D19Dcr125 19 47675632 to 47675727 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 125
D19Dcr126 19 47677242 to 47677337 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 126
D19Dcr127 19 47677952 to 47678047 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 127
D19Dcr128 19 47678736 to 47678831 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 128
D19Dcr129 19 47680208 to 47680303 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 129
D19Dcr130 19 47680972 to 47681067 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 130
Tssr159745 19 47681487 to 47681498 11 - TSS region transcription start site region 159745
D19Dcr131 19 47682019 to 47682114 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 131
D19Dcr132 19 47682881 to 47682976 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 132
D19Dcr133 19 47683906 to 47684001 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 133
D19Dcr134 19 47684993 to 47685088 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 134
D19Dcr53 19 47685624 to 47685719 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 53
D19Dcr135 19 47687152 to 47687275 123 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 135
D19Dcr136 19 47688158 to 47688277 119 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 136
D19Dcr137 19 47688930 to 47689025 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 137
D19Dcr138 19 47689703 to 47689798 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 138
D19Dcr139 19 47690682 to 47690777 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 139
Tssr159746 19 47691848 to 47691875 27 - TSS region transcription start site region 159746
Tssr159747 19 47691884 to 47691904 20 - TSS region transcription start site region 159747
Tssr159748 19 47691909 to 47691912 3 - TSS region transcription start site region 159748
Tssr159749 19 47691946 to 47691979 33 - TSS region transcription start site region 159749
Tssr159750 19 47692007 to 47692027 20 - TSS region transcription start site region 159750
Tssr159751 19 47692028 to 47692033 5 - TSS region transcription start site region 159751
Tssr159752 19 47692042 to 47692053 11 - TSS region transcription start site region 159752
D19Dcr140 19 47692057 to 47692152 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 140
Tssr159753 19 47692089 to 47692096 7 - TSS region transcription start site region 159753
D19Dcr54 19 47696877 to 47696975 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 54
Tssr159754 19 47705624 to 47705633 9 - TSS region transcription start site region 159754
Tssr156882 19 47705783 to 47705806 23 + TSS region transcription start site region 156882
Tssr156883 19 47705941 to 47705946 5 + TSS region transcription start site region 156883
Gm26085 19 47710866 to 47710981 115 + snoRNA gene predicted gene, 26085
Gm24805 19 47714784 to 47714887 103 - snRNA gene predicted gene, 24805
D19Dcr55 19 47728013 to 47728108 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 55
Cpgi11035 19 47730886 to 47732121 1235 CpG island CpG island 11035
Tssr156884 19 47731743 to 47731768 25 + TSS region transcription start site region 156884
Sfr1 19 47731756 to 47735588 3832 + protein coding gene SWI5 dependent recombination repair 1
Tssr156885 19 47731774 to 47731797 23 + TSS region transcription start site region 156885
Tssr156886 19 47732945 to 47732950 5 + TSS region transcription start site region 156886
Tssr156887 19 47733652 to 47733665 13 + TSS region transcription start site region 156887
Cfap43 19 47735267 to 47837837 102570 - protein coding gene cilia and flagella associated protein 43
Mir8090 19 47755022 to 47755157 135 - miRNA gene microRNA 8090
Cpgi11036 19 47755641 to 47755940 299 CpG island CpG island 11036
Cpgi11037 19 47786755 to 47787115 360 CpG island CpG island 11037
Tssr159755 19 47787107 to 47787129 22 - TSS region transcription start site region 159755
D19Dcr56 19 47788541 to 47788651 110 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 56
Cpgi11038 19 47813125 to 47813310 185 CpG island CpG island 11038
D19Mit83 19 47831148 to 47831274 126 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 83
Tssr156888 19 47834936 to 47834945 9 + TSS region transcription start site region 156888
Tssr159756 19 47835939 to 47835982 43 - TSS region transcription start site region 159756
Cpgi11039 19 47837047 to 47837736 689 CpG island CpG island 11039
Tssr159757 19 47837262 to 47837275 13 - TSS region transcription start site region 159757
Tssr159758 19 47837291 to 47837305 14 - TSS region transcription start site region 159758
Tssr159759 19 47837378 to 47837424 46 - TSS region transcription start site region 159759
Gm30021 19 47853111 to 47854772 1661 - lncRNA gene predicted gene, 30021
Tssr156889 19 47854103 to 47854115 12 + TSS region transcription start site region 156889
Tssr156890 19 47854246 to 47854274 28 + TSS region transcription start site region 156890
Cpgi11040 19 47854664 to 47855452 788 CpG island CpG island 11040
Tssr159760 19 47854910 to 47854921 11 - TSS region transcription start site region 159760
Gsto1 19 47854973 to 47864790 9817 + protein coding gene glutathione S-transferase omega 1
Tssr156891 19 47854995 to 47855013 18 + TSS region transcription start site region 156891
Tssr156892 19 47855018 to 47855021 3 + TSS region transcription start site region 156892
Tssr156893 19 47855022 to 47855047 25 + TSS region transcription start site region 156893
Tssr156894 19 47855207 to 47855225 18 + TSS region transcription start site region 156894
Tssr159761 19 47855292 to 47855328 36 - TSS region transcription start site region 159761
Tssr156895 19 47857849 to 47857893 44 + TSS region transcription start site region 156895
Tssr159762 19 47857887 to 47857896 9 - TSS region transcription start site region 159762
Tssr156896 19 47857991 to 47858007 16 + TSS region transcription start site region 156896
Tssr159763 19 47857992 to 47858028 36 - TSS region transcription start site region 159763
Tssr159764 19 47858034 to 47858064 30 - TSS region transcription start site region 159764
Tssr156897 19 47859421 to 47859510 89 + TSS region transcription start site region 156897
Tssr159765 19 47859461 to 47859485 24 - TSS region transcription start site region 159765
Tssr159766 19 47859493 to 47859539 46 - TSS region transcription start site region 159766
Tssr156898 19 47860737 to 47860748 11 + TSS region transcription start site region 156898
Tssr156899 19 47860763 to 47860771 8 + TSS region transcription start site region 156899
Tssr156900 19 47863375 to 47863386 11 + TSS region transcription start site region 156900
Tssr159767 19 47863401 to 47863426 25 - TSS region transcription start site region 159767
Tssr156901 19 47863406 to 47863418 12 + TSS region transcription start site region 156901
Tssr159768 19 47863465 to 47863489 24 - TSS region transcription start site region 159768
Tssr156902 19 47864291 to 47864306 15 + TSS region transcription start site region 156902
Tssr156903 19 47864316 to 47864325 9 + TSS region transcription start site region 156903
Tssr156904 19 47864345 to 47864350 5 + TSS region transcription start site region 156904
Tssr156905 19 47864388 to 47864403 15 + TSS region transcription start site region 156905
Tssr159769 19 47864414 to 47864432 18 - TSS region transcription start site region 159769
Tssr156906 19 47864421 to 47864430 9 + TSS region transcription start site region 156906
Tssr159770 19 47864437 to 47864462 25 - TSS region transcription start site region 159770
Tssr156907 19 47864440 to 47864488 48 + TSS region transcription start site region 156907
Tssr159771 19 47864505 to 47864516 11 - TSS region transcription start site region 159771
Tssr156908 19 47864508 to 47864517 9 + TSS region transcription start site region 156908
Tssr156909 19 47864534 to 47864541 7 + TSS region transcription start site region 156909
Tssr156910 19 47864563 to 47864586 23 + TSS region transcription start site region 156910
Tssr156911 19 47864616 to 47864638 22 + TSS region transcription start site region 156911
Tssr159772 19 47864639 to 47864658 19 - TSS region transcription start site region 159772
Tssr156912 19 47864640 to 47864656 16 + TSS region transcription start site region 156912
Tssr156913 19 47864708 to 47864717 9 + TSS region transcription start site region 156913
Tssr159773 19 47864779 to 47864789 10 - TSS region transcription start site region 159773
Tssr159774 19 47864952 to 47864958 6 - TSS region transcription start site region 159774
Cpgi11041 19 47865292 to 47865936 644 CpG island CpG island 11041
Tssr156914 19 47865516 to 47865529 13 + TSS region transcription start site region 156914
Tssr156915 19 47865543 to 47865548 5 + TSS region transcription start site region 156915
Gsto2 19 47865545 to 47886305 20760 + protein coding gene glutathione S-transferase omega 2
Tssr156916 19 47865573 to 47865581 8 + TSS region transcription start site region 156916
Tssr156917 19 47865777 to 47865808 31 + TSS region transcription start site region 156917
Tssr156918 19 47865815 to 47865835 20 + TSS region transcription start site region 156918
Itprip 19 47894593 to 47919519 24926 - protein coding gene inositol 1,4,5-triphosphate receptor interacting protein
Tssr159775 19 47900663 to 47900695 32 - TSS region transcription start site region 159775
Acsns1 19 47909441 to 55038113 7128672 QTL Angiostrongylus costaricensis nematode susceptibility 1
Nobq2 19 47909441 to 47909549 108 QTL New Zealand obese QTL 2
D19Mit91 19 47909441 to 47909549 108 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 91
Tssr159776 19 47913882 to 47913886 4 - TSS region transcription start site region 159776
Tssr159777 19 47914506 to 47914518 12 - TSS region transcription start site region 159777
Tssr156919 19 47915557 to 47915564 7 + TSS region transcription start site region 156919
Cpgi11042 19 47918689 to 47919470 781 CpG island CpG island 11042
Tssr156920 19 47918706 to 47918741 35 + TSS region transcription start site region 156920
Tssr159778 19 47918921 to 47918930 9 - TSS region transcription start site region 159778
Gm22240 19 47919192 to 47919273 81 - miRNA gene predicted gene, 22240
Tssr159779 19 47919193 to 47919235 42 - TSS region transcription start site region 159779
Tssr159780 19 47919237 to 47919260 23 - TSS region transcription start site region 159780
Tssr159781 19 47919269 to 47919305 36 - TSS region transcription start site region 159781
Cpgi11043 19 47937436 to 47938232 796 CpG island CpG island 11043
Tssr156921 19 47937648 to 47937696 48 + TSS region transcription start site region 156921
Cfap58 19 47937712 to 48035379 97667 + protein coding gene cilia and flagella associated protein 58
Cpgi11044 19 47947148 to 47947384 236 CpG island CpG island 11044
Cpgi11045 19 47962320 to 47962601 281 CpG island CpG island 11045
D19Dcr57 19 47981204 to 47981299 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 57
D19Mit4 19 48032464 to 48032661 197 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 4
Tssr5545 19 48063563 to 48063566 3 + TSS region transcription start site region 5545
Tssr159782 19 48127390 to 48127393 3 - TSS region transcription start site region 159782
D19Dcr58 19 48180641 to 48180752 111 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 58
Cpgi11046 19 48204015 to 48204417 402 CpG island CpG island 11046
Cpgi11047 19 48204707 to 48206855 2148 CpG island CpG island 11047
Tssr156922 19 48205477 to 48205511 34 + TSS region transcription start site region 156922
Tssr156923 19 48205513 to 48205525 12 + TSS region transcription start site region 156923
Sorcs3 19 48206025 to 48805505 599480 + protein coding gene sortilin-related VPS10 domain containing receptor 3
Tssr156924 19 48206133 to 48206163 30 + TSS region transcription start site region 156924
D19Dcr59 19 48239596 to 48239705 109 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 59
Gm23857 19 48240535 to 48240645 110 - rRNA gene predicted gene, 23857
1700021N20Rik 19 48240773 to 48241113 340 unclassified gene RIKEN cDNA 1700021N20 gene
D19Dcr60 19 48246306 to 48246408 102 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 60
D19Dcr61 19 48297452 to 48297547 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 61
Tssr156925 19 48313346 to 48313351 5 + TSS region transcription start site region 156925
Tssr156926 19 48332176 to 48332184 8 + TSS region transcription start site region 156926
D19Dcr62 19 48394463 to 48394561 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 62
D19Dcr63 19 48417106 to 48417207 101 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 63
D19Mit74 19 48534172 to 48534264 92 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 74
Tssr5546 19 48769499 to 48769502 3 + TSS region transcription start site region 5546