Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4742605-4862625

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41 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sptbn2 19 4711223 to 4752359 41136 + protein coding gene spectrin beta, non-erythrocytic 2
Cpgi10407 19 4745795 to 4745955 160 CpG island CpG island 10407
Cpgi10408 19 4756176 to 4757057 881 CpG island CpG island 10408
Tssr154355 19 4756436 to 4756443 7 + TSS region transcription start site region 154355
Tssr154356 19 4756463 to 4756476 13 + TSS region transcription start site region 154356
Tssr154357 19 4756488 to 4756497 9 + TSS region transcription start site region 154357
Tssr154358 19 4756527 to 4756556 29 + TSS region transcription start site region 154358
Rbm4b 19 4756543 to 4767065 10522 + protein coding gene RNA binding motif protein 4B
Tssr154359 19 4756557 to 4756623 66 + TSS region transcription start site region 154359
Tssr154360 19 4756831 to 4756869 38 + TSS region transcription start site region 154360
Tssr157510 19 4759215 to 4759217 2 - TSS region transcription start site region 157510
Gm37206 19 4762103 to 4765171 3068 - unclassified gene predicted gene, 37206
Tssr157511 19 4774069 to 4774070 1 - TSS region transcription start site region 157511
Gm19103 19 4778072 to 4778697 625 + pseudogene predicted gene, 19103
Gm21992 19 4784293 to 4811634 27341 - protein coding gene predicted gene 21992
Rbm4 19 4784293 to 4793901 9608 - protein coding gene RNA binding motif protein 4
Cpgi10409 19 4793611 to 4794385 774 CpG island CpG island 10409
Tssr157512 19 4793854 to 4793905 51 - TSS region transcription start site region 157512
5430440L12Rik 19 4794719 to 4795955 1236 unclassified gene RIKEN cDNA 5430440L12 gene
Rbm14 19 4800569 to 4811634 11065 - protein coding gene RNA binding motif protein 14
Tssr157513 19 4801356 to 4801370 14 - TSS region transcription start site region 157513
Gm21844 19 4801512 to 4805784 4272 + antisense lncRNA gene predicted gene, 21844
Cpgi10410 19 4802568 to 4802847 279 CpG island CpG island 10410
Tssr157514 19 4802605 to 4802625 20 - TSS region transcription start site region 157514
Cpgi10411 19 4810652 to 4812018 1366 CpG island CpG island 10411
Tssr157515 19 4811589 to 4811619 30 - TSS region transcription start site region 157515
Tssr154361 19 4811836 to 4811864 28 + TSS region transcription start site region 154361
Ccs 19 4825366 to 4839322 13956 - protein coding gene copper chaperone for superoxide dismutase
Tssr157516 19 4828636 to 4828642 6 - TSS region transcription start site region 157516
Cpgi10412 19 4839048 to 4839986 938 CpG island CpG island 10412
Tssr157517 19 4839256 to 4839278 22 - TSS region transcription start site region 157517
Tssr157518 19 4839286 to 4839338 52 - TSS region transcription start site region 157518
Ccdc87 19 4839366 to 4842528 3162 + protein coding gene coiled-coil domain containing 87
Tssr154362 19 4839409 to 4839482 73 + TSS region transcription start site region 154362
Cpgi10413 19 4854835 to 4855860 1025 CpG island CpG island 10413
Ctsf 19 4855129 to 4860912 5783 + protein coding gene cathepsin F
Tssr154363 19 4855147 to 4855269 122 + TSS region transcription start site region 154363
Tssr154364 19 4859222 to 4859262 40 + TSS region transcription start site region 154364
Tssr154365 19 4859373 to 4859386 13 + TSS region transcription start site region 154365
Tssr154366 19 4859409 to 4859422 13 + TSS region transcription start site region 154366
Actn3 19 4861223 to 4877909 16686 - protein coding gene actinin alpha 3