Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:47072477-47472481

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98 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Taf5 19 47067748 to 47083479 15731 + protein coding gene TATA-box binding protein associated factor 5
Atp5md 19 47083471 to 47090625 7154 - protein coding gene ATP synthase membrane subunit DAPIT
D19Dcr89 19 47083655 to 47083750 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 89
Cpgi11018 19 47090021 to 47091170 1149 CpG island CpG island 11018
Tssr159695 19 47090610 to 47090655 45 - TSS region transcription start site region 159695
Tssr159696 19 47090678 to 47090683 5 - TSS region transcription start site region 159696
Tssr159697 19 47090701 to 47090704 3 - TSS region transcription start site region 159697
Tssr156845 19 47090748 to 47090800 52 + TSS region transcription start site region 156845
Pdcd11 19 47090766 to 47131143 40377 + protein coding gene programmed cell death 11
Tssr156846 19 47090810 to 47090813 3 + TSS region transcription start site region 156846
Tssr159698 19 47090865 to 47090878 13 - TSS region transcription start site region 159698
Tssr156847 19 47091005 to 47091037 32 + TSS region transcription start site region 156847
D19Dcr90 19 47101541 to 47101641 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 90
D930027P08Rik 19 47126149 to 47131250 5101 unclassified gene RIKEN cDNA D930027P08 gene
Tssr159699 19 47131981 to 47132004 23 - TSS region transcription start site region 159699
Tssr159700 19 47132054 to 47132071 17 - TSS region transcription start site region 159700
Calhm2 19 47132232 to 47138294 6062 - protein coding gene calcium homeostasis modulator family member 2
Cpgi11019 19 47132861 to 47133141 280 CpG island CpG island 11019
Cpgi11020 19 47138026 to 47138365 339 CpG island CpG island 11020
Tssr159701 19 47138140 to 47138150 10 - TSS region transcription start site region 159701
Tssr159702 19 47138179 to 47138190 11 - TSS region transcription start site region 159702
Tssr159703 19 47138214 to 47138237 23 - TSS region transcription start site region 159703
Tssr159704 19 47138250 to 47138276 26 - TSS region transcription start site region 159704
Tssr159705 19 47138280 to 47138300 20 - TSS region transcription start site region 159705
Tssr159706 19 47138304 to 47138309 5 - TSS region transcription start site region 159706
Calhm1 19 47141035 to 47144174 3139 - protein coding gene calcium homeostasis modulator 1
Lfibq11 19 47144139 to 47864318 720179 QTL liver fibrosis QTL 11
Cpgi11021 19 47151652 to 47152179 527 CpG island CpG island 11021
Calhm3 19 47151699 to 47157764 6065 - protein coding gene calcium homeostasis modulator 3
Fembm7 19 47152785 to 47152981 196 QTL femoral bone morphometry 7
D19Mit8 19 47152785 to 47152981 196 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 8
D19Mit10 19 47152792 to 47152941 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 10
Cd8mts6 19 47152792 to 47152941 149 QTL CD8 memory T cell subset 6
Pas13 19 47152792 to 47152941 149 QTL pulmonary adenoma susceptibility 13
Gm6970 19 47170469 to 47171134 665 - pseudogene predicted gene 6970
Tssr159707 19 47171199 to 47171203 4 - TSS region transcription start site region 159707
Cpgi11022 19 47178233 to 47179880 1647 CpG island CpG island 11022
Neurl1a 19 47178820 to 47259440 80620 + protein coding gene neuralized E3 ubiquitin protein ligase 1A
Tssr156848 19 47178947 to 47178997 50 + TSS region transcription start site region 156848
Tssr156849 19 47179004 to 47179030 26 + TSS region transcription start site region 156849
Tssr156850 19 47179038 to 47179079 41 + TSS region transcription start site region 156850
Tssr156851 19 47179116 to 47179176 60 + TSS region transcription start site region 156851
Tssr156852 19 47179359 to 47179375 16 + TSS region transcription start site region 156852
Tssr156853 19 47179381 to 47179412 31 + TSS region transcription start site region 156853
Gm36693 19 47197881 to 47206768 8887 - lncRNA gene predicted gene, 36693
Tssr159708 19 47205735 to 47205736 1 - TSS region transcription start site region 159708
Tssr156854 19 47228804 to 47228815 11 + TSS region transcription start site region 156854
Tssr5543 19 47228840 to 47228872 32 + TSS region transcription start site region 5543
Tssr156855 19 47229020 to 47229047 27 + TSS region transcription start site region 156855
Tssr156856 19 47229066 to 47229073 7 + TSS region transcription start site region 156856
D19Dcr91 19 47232819 to 47232922 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 91
D19Dcr92 19 47237402 to 47237497 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 92
D19Dcr93 19 47237783 to 47237878 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 93
Cpgi11023 19 47239776 to 47240033 257 CpG island CpG island 11023
Tssr156857 19 47240324 to 47240349 25 + TSS region transcription start site region 156857
Cpgi11024 19 47240403 to 47240642 239 CpG island CpG island 11024
D19Dcr94 19 47245984 to 47246090 106 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 94
Cpgi11025 19 47252886 to 47253898 1012 CpG island CpG island 11025
Tssr156858 19 47253417 to 47253447 30 + TSS region transcription start site region 156858
Sh3pxd2a 19 47260174 to 47464411 204237 - protein coding gene SH3 and PX domains 2A
Tssr159709 19 47266121 to 47266130 9 - TSS region transcription start site region 159709
Tssr159710 19 47266880 to 47266886 6 - TSS region transcription start site region 159710
Cpgi11026 19 47267142 to 47267507 365 CpG island CpG island 11026
Tssr159711 19 47268782 to 47268806 24 - TSS region transcription start site region 159711
Tssr159712 19 47272033 to 47272058 25 - TSS region transcription start site region 159712
Tssr159713 19 47272477 to 47272481 4 - TSS region transcription start site region 159713
Mir6995 19 47273519 to 47273589 70 - miRNA gene microRNA 6995
Gm29834 19 47286725 to 47293330 6605 + lncRNA gene predicted gene, 29834
Cpgi11027 19 47305253 to 47305502 249 CpG island CpG island 11027
Cpgi11028 19 47313799 to 47314494 695 CpG island CpG island 11028
Tssr159714 19 47314375 to 47314383 8 - TSS region transcription start site region 159714
Tssr159715 19 47314705 to 47314719 14 - TSS region transcription start site region 159715
Tssr159716 19 47314745 to 47314761 16 - TSS region transcription start site region 159716
Tssr159717 19 47314764 to 47314788 24 - TSS region transcription start site region 159717
Tssr159718 19 47314790 to 47314807 17 - TSS region transcription start site region 159718
Tssr159719 19 47314818 to 47314829 11 - TSS region transcription start site region 159719
Tssr159720 19 47320379 to 47320440 61 - TSS region transcription start site region 159720
Cpgi11029 19 47342880 to 47344187 1307 CpG island CpG island 11029
Tssr159721 19 47343576 to 47343591 15 - TSS region transcription start site region 159721
Tssr159722 19 47343593 to 47343652 59 - TSS region transcription start site region 159722
Cpgi11030 19 47348765 to 47348925 160 CpG island CpG island 11030
D19Dcr95 19 47353341 to 47353452 111 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 95
Tssr159723 19 47373663 to 47373679 16 - TSS region transcription start site region 159723
Tssr159724 19 47416147 to 47416162 15 - TSS region transcription start site region 159724
Tssr159725 19 47416188 to 47416202 14 - TSS region transcription start site region 159725
Tssr159726 19 47416317 to 47416328 11 - TSS region transcription start site region 159726
Gm36885 19 47426070 to 47435135 9065 + lncRNA gene predicted gene, 36885
Tssr159727 19 47432625 to 47432642 17 - TSS region transcription start site region 159727
Tssr159728 19 47450603 to 47450652 49 - TSS region transcription start site region 159728
Tssr156859 19 47451097 to 47451103 6 + TSS region transcription start site region 156859
Tssr156860 19 47455617 to 47455655 38 + TSS region transcription start site region 156860
Tssr159729 19 47460608 to 47460623 15 - TSS region transcription start site region 159729
Tssr159730 19 47460758 to 47460767 9 - TSS region transcription start site region 159730
Cpgi11031 19 47463399 to 47464888 1489 CpG island CpG island 11031
Tssr159731 19 47464094 to 47464113 19 - TSS region transcription start site region 159731
Tssr159732 19 47464115 to 47464154 39 - TSS region transcription start site region 159732
Tssr159733 19 47464406 to 47464450 44 - TSS region transcription start site region 159733
Tssr159734 19 47464579 to 47464635 56 - TSS region transcription start site region 159734