Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:46840326-47260374

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135 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cnnm2 19 46761564 to 46878580 117016 + protein coding gene cyclin M2
Tssr156815 19 46846848 to 46846860 12 + TSS region transcription start site region 156815
Tssr159667 19 46863537 to 46863550 13 - TSS region transcription start site region 159667
Tssr159668 19 46863556 to 46863569 13 - TSS region transcription start site region 159668
Tssr159669 19 46863640 to 46863653 13 - TSS region transcription start site region 159669
Tssr156816 19 46863885 to 46863894 9 + TSS region transcription start site region 156816
Tssr156817 19 46863903 to 46863922 19 + TSS region transcription start site region 156817
Tssr159670 19 46864233 to 46864280 47 - TSS region transcription start site region 159670
Tssr5541 19 46868971 to 46868993 22 - TSS region transcription start site region 5541
A930026I22Rik 19 46882356 to 46883973 1617 unclassified gene RIKEN cDNA A930026I22 gene
Nt5c2 19 46886831 to 47015153 128322 - protein coding gene 5'-nucleotidase, cytosolic II
Gm9751 19 46889007 to 46909574 20567 unclassified gene predicted gene 9751
Tssr159671 19 46901467 to 46901471 4 - TSS region transcription start site region 159671
Tssr159672 19 46908645 to 46908649 4 - TSS region transcription start site region 159672
Gm18490 19 46920507 to 46921270 763 - pseudogene predicted gene, 18490
Tssr159673 19 46925558 to 46925562 4 - TSS region transcription start site region 159673
Tssr159674 19 46929222 to 46929227 5 - TSS region transcription start site region 159674
Tssr159675 19 46932298 to 46932302 4 - TSS region transcription start site region 159675
Tssr159676 19 46941035 to 46941044 9 - TSS region transcription start site region 159676
Tssr159677 19 46943938 to 46943955 17 - TSS region transcription start site region 159677
Tssr159678 19 46946642 to 46946661 19 - TSS region transcription start site region 159678
Cpgi11013 19 46961542 to 46962659 1117 CpG island CpG island 11013
Tssr156818 19 46961808 to 46961820 12 + TSS region transcription start site region 156818
Tssr159679 19 46961876 to 46961895 19 - TSS region transcription start site region 159679
Tssr159680 19 46961916 to 46961930 14 - TSS region transcription start site region 159680
Tssr159681 19 46961936 to 46961972 36 - TSS region transcription start site region 159681
Tssr159682 19 46962301 to 46962317 16 - TSS region transcription start site region 159682
Tssr159683 19 46962325 to 46962333 8 - TSS region transcription start site region 159683
Tssr159684 19 46962509 to 46962579 70 - TSS region transcription start site region 159684
Tssr156819 19 46962658 to 46962699 41 + TSS region transcription start site region 156819
Tssr159685 19 46969540 to 46969555 15 - TSS region transcription start site region 159685
Tssr159686 19 46969562 to 46969572 10 - TSS region transcription start site region 159686
D19Dcr36 19 46970236 to 46970333 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 36
Tssr159687 19 46985363 to 46985368 5 - TSS region transcription start site region 159687
Tssr159688 19 46985372 to 46985398 26 - TSS region transcription start site region 159688
Tssr156820 19 46985518 to 46985532 14 + TSS region transcription start site region 156820
Tssr159689 19 46987809 to 46987820 11 - TSS region transcription start site region 159689
Tssr156821 19 46987925 to 46987956 31 + TSS region transcription start site region 156821
Gm18657 19 46996290 to 46997196 906 + pseudogene predicted gene, 18657
Cpgi11014 19 47014041 to 47016016 1975 CpG island CpG island 11014
Tssr156822 19 47014477 to 47014486 9 + TSS region transcription start site region 156822
Tssr156823 19 47014660 to 47014671 11 + TSS region transcription start site region 156823
Tssr156824 19 47014672 to 47014691 19 + TSS region transcription start site region 156824
Ina 19 47014698 to 47024358 9660 + protein coding gene internexin neuronal intermediate filament protein, alpha
Tssr159690 19 47015113 to 47015206 93 - TSS region transcription start site region 159690
Tssr156825 19 47015204 to 47015216 12 + TSS region transcription start site region 156825
Tssr156826 19 47015219 to 47015289 70 + TSS region transcription start site region 156826
Tssr156827 19 47015299 to 47015314 15 + TSS region transcription start site region 156827
Tssr156828 19 47015317 to 47015335 18 + TSS region transcription start site region 156828
Cpgi11015 19 47016479 to 47016757 278 CpG island CpG island 11015
Tssr156829 19 47016826 to 47016829 3 + TSS region transcription start site region 156829
Tssr5542 19 47023371 to 47023382 11 + TSS region transcription start site region 5542
Tssr156830 19 47023387 to 47023400 13 + TSS region transcription start site region 156830
Tssr156831 19 47023444 to 47023460 16 + TSS region transcription start site region 156831
Tssr156832 19 47023500 to 47023513 13 + TSS region transcription start site region 156832
Tssr156833 19 47023545 to 47023556 11 + TSS region transcription start site region 156833
Tssr156834 19 47023571 to 47023582 11 + TSS region transcription start site region 156834
Tssr156835 19 47023809 to 47023820 11 + TSS region transcription start site region 156835
Tssr156836 19 47023837 to 47023848 11 + TSS region transcription start site region 156836
Tssr156837 19 47023924 to 47023934 10 + TSS region transcription start site region 156837
Tssr156838 19 47024048 to 47024059 11 + TSS region transcription start site region 156838
Tssr156839 19 47024651 to 47024663 12 + TSS region transcription start site region 156839
Tssr156840 19 47024727 to 47024738 11 + TSS region transcription start site region 156840
Tssr156841 19 47024758 to 47024776 18 + TSS region transcription start site region 156841
Tssr156842 19 47024978 to 47024986 8 + TSS region transcription start site region 156842
Tssr156843 19 47025253 to 47025269 16 + TSS region transcription start site region 156843
Pcgf6 19 47033619 to 47050845 17226 - protein coding gene polycomb group ring finger 6
Cpgi11016 19 47050240 to 47051125 885 CpG island CpG island 11016
Tssr159691 19 47050326 to 47050374 48 - TSS region transcription start site region 159691
Tssr159692 19 47050823 to 47050915 92 - TSS region transcription start site region 159692
Gm23140 19 47058162 to 47058268 106 + snRNA gene predicted gene, 23140
Cpgi11017 19 47067489 to 47068684 1195 CpG island CpG island 11017
Tssr156844 19 47067721 to 47067768 47 + TSS region transcription start site region 156844
Taf5 19 47067748 to 47083479 15731 + protein coding gene TATA-box binding protein associated factor 5
Tssr159693 19 47068378 to 47068402 24 - TSS region transcription start site region 159693
Tssr159694 19 47068412 to 47068423 11 - TSS region transcription start site region 159694
Atp5md 19 47083471 to 47090625 7154 - protein coding gene ATP synthase membrane subunit DAPIT
D19Dcr89 19 47083655 to 47083750 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 89
Cpgi11018 19 47090021 to 47091170 1149 CpG island CpG island 11018
Tssr159695 19 47090610 to 47090655 45 - TSS region transcription start site region 159695
Tssr159696 19 47090678 to 47090683 5 - TSS region transcription start site region 159696
Tssr159697 19 47090701 to 47090704 3 - TSS region transcription start site region 159697
Tssr156845 19 47090748 to 47090800 52 + TSS region transcription start site region 156845
Pdcd11 19 47090766 to 47131143 40377 + protein coding gene programmed cell death 11
Tssr156846 19 47090810 to 47090813 3 + TSS region transcription start site region 156846
Tssr159698 19 47090865 to 47090878 13 - TSS region transcription start site region 159698
Tssr156847 19 47091005 to 47091037 32 + TSS region transcription start site region 156847
D19Dcr90 19 47101541 to 47101641 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 90
D930027P08Rik 19 47126149 to 47131250 5101 unclassified gene RIKEN cDNA D930027P08 gene
Tssr159699 19 47131981 to 47132004 23 - TSS region transcription start site region 159699
Tssr159700 19 47132054 to 47132071 17 - TSS region transcription start site region 159700
Calhm2 19 47132232 to 47138294 6062 - protein coding gene calcium homeostasis modulator family member 2
Cpgi11019 19 47132861 to 47133141 280 CpG island CpG island 11019
Cpgi11020 19 47138026 to 47138365 339 CpG island CpG island 11020
Tssr159701 19 47138140 to 47138150 10 - TSS region transcription start site region 159701
Tssr159702 19 47138179 to 47138190 11 - TSS region transcription start site region 159702
Tssr159703 19 47138214 to 47138237 23 - TSS region transcription start site region 159703
Tssr159704 19 47138250 to 47138276 26 - TSS region transcription start site region 159704
Tssr159705 19 47138280 to 47138300 20 - TSS region transcription start site region 159705
Tssr159706 19 47138304 to 47138309 5 - TSS region transcription start site region 159706
Calhm1 19 47141035 to 47144174 3139 - protein coding gene calcium homeostasis modulator 1
Lfibq11 19 47144139 to 47864318 720179 QTL liver fibrosis QTL 11
Cpgi11021 19 47151652 to 47152179 527 CpG island CpG island 11021
Calhm3 19 47151699 to 47157764 6065 - protein coding gene calcium homeostasis modulator 3
Fembm7 19 47152785 to 47152981 196 QTL femoral bone morphometry 7
D19Mit8 19 47152785 to 47152981 196 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 8
Pas13 19 47152792 to 47152941 149 QTL pulmonary adenoma susceptibility 13
D19Mit10 19 47152792 to 47152941 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 10
Cd8mts6 19 47152792 to 47152941 149 QTL CD8 memory T cell subset 6
Gm6970 19 47170469 to 47171134 665 - pseudogene predicted gene 6970
Tssr159707 19 47171199 to 47171203 4 - TSS region transcription start site region 159707
Cpgi11022 19 47178233 to 47179880 1647 CpG island CpG island 11022
Neurl1a 19 47178820 to 47259440 80620 + protein coding gene neuralized E3 ubiquitin protein ligase 1A
Tssr156848 19 47178947 to 47178997 50 + TSS region transcription start site region 156848
Tssr156849 19 47179004 to 47179030 26 + TSS region transcription start site region 156849
Tssr156850 19 47179038 to 47179079 41 + TSS region transcription start site region 156850
Tssr156851 19 47179116 to 47179176 60 + TSS region transcription start site region 156851
Tssr156852 19 47179359 to 47179375 16 + TSS region transcription start site region 156852
Tssr156853 19 47179381 to 47179412 31 + TSS region transcription start site region 156853
Gm36693 19 47197881 to 47206768 8887 - lncRNA gene predicted gene, 36693
Tssr159708 19 47205735 to 47205736 1 - TSS region transcription start site region 159708
Tssr156854 19 47228804 to 47228815 11 + TSS region transcription start site region 156854
Tssr5543 19 47228840 to 47228872 32 + TSS region transcription start site region 5543
Tssr156855 19 47229020 to 47229047 27 + TSS region transcription start site region 156855
Tssr156856 19 47229066 to 47229073 7 + TSS region transcription start site region 156856
D19Dcr91 19 47232819 to 47232922 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 91
D19Dcr92 19 47237402 to 47237497 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 92
D19Dcr93 19 47237783 to 47237878 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 93
Cpgi11023 19 47239776 to 47240033 257 CpG island CpG island 11023
Tssr156857 19 47240324 to 47240349 25 + TSS region transcription start site region 156857
Cpgi11024 19 47240403 to 47240642 239 CpG island CpG island 11024
D19Dcr94 19 47245984 to 47246090 106 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 94
Cpgi11025 19 47252886 to 47253898 1012 CpG island CpG island 11025
Tssr156858 19 47253417 to 47253447 30 + TSS region transcription start site region 156858
Sh3pxd2a 19 47260174 to 47464411 204237 - protein coding gene SH3 and PX domains 2A