Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:46469960-46769970

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99 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sufu 19 46396896 to 46488804 91908 + protein coding gene SUFU negative regulator of hedgehog signaling
Cpgi11003 19 46499809 to 46500513 704 CpG island CpG island 11003
Tssr156757 19 46500042 to 46500056 14 + TSS region transcription start site region 156757
Tssr156758 19 46500167 to 46500197 30 + TSS region transcription start site region 156758
Tssr156759 19 46500201 to 46500230 29 + TSS region transcription start site region 156759
Tssr156760 19 46500234 to 46500259 25 + TSS region transcription start site region 156760
Tssr156761 19 46500611 to 46500651 40 + TSS region transcription start site region 156761
Tssr156762 19 46500756 to 46500770 14 + TSS region transcription start site region 156762
Cpgi11004 19 46500770 to 46503221 2451 CpG island CpG island 11004
Tssr156763 19 46500826 to 46500837 11 + TSS region transcription start site region 156763
Tssr159651 19 46500940 to 46500945 5 - TSS region transcription start site region 159651
Tssr156764 19 46500988 to 46501000 12 + TSS region transcription start site region 156764
Tssr156765 19 46501167 to 46501197 30 + TSS region transcription start site region 156765
Tssr156766 19 46501431 to 46501471 40 + TSS region transcription start site region 156766
Gm9798 19 46501647 to 46502781 1134 unclassified gene predicted gene 9798
Trim8 19 46501648 to 46516444 14796 + protein coding gene tripartite motif-containing 8
Tssr156767 19 46501664 to 46501675 11 + TSS region transcription start site region 156767
Tssr156768 19 46501685 to 46501707 22 + TSS region transcription start site region 156768
Tssr156769 19 46501715 to 46501733 18 + TSS region transcription start site region 156769
Tssr156770 19 46501738 to 46501773 35 + TSS region transcription start site region 156770
Tssr156771 19 46501790 to 46501802 12 + TSS region transcription start site region 156771
Tssr156772 19 46501812 to 46501832 20 + TSS region transcription start site region 156772
Tssr156773 19 46502290 to 46502325 35 + TSS region transcription start site region 156773
Tssr156774 19 46502880 to 46502912 32 + TSS region transcription start site region 156774
Tssr159652 19 46502936 to 46502950 14 - TSS region transcription start site region 159652
Tssr159653 19 46503676 to 46503696 20 - TSS region transcription start site region 159653
Tssr156775 19 46511154 to 46511158 4 + TSS region transcription start site region 156775
Tssr156776 19 46514616 to 46514631 15 + TSS region transcription start site region 156776
Cpgi11005 19 46515013 to 46515667 654 CpG island CpG island 11005
Tssr156777 19 46515322 to 46515340 18 + TSS region transcription start site region 156777
Tssr156778 19 46515714 to 46515762 48 + TSS region transcription start site region 156778
Tssr156779 19 46515839 to 46515856 17 + TSS region transcription start site region 156779
Tssr156780 19 46516153 to 46516179 26 + TSS region transcription start site region 156780
Tssr156781 19 46516187 to 46516203 16 + TSS region transcription start site region 156781
Tssr156782 19 46516253 to 46516309 56 + TSS region transcription start site region 156782
Cpgi11006 19 46528646 to 46529024 378 CpG island CpG island 11006
Arl3 19 46531109 to 46573085 41976 - protein coding gene ADP-ribosylation factor-like 3
Tssr159654 19 46558297 to 46558333 36 - TSS region transcription start site region 159654
Tssr5538 19 46558774 to 46558800 26 - TSS region transcription start site region 5538
Cpgi11007 19 46572599 to 46573925 1326 CpG island CpG island 11007
Tssr159655 19 46573059 to 46573082 23 - TSS region transcription start site region 159655
Tssr159656 19 46573096 to 46573207 111 - TSS region transcription start site region 159656
Tssr156783 19 46573362 to 46573421 59 + TSS region transcription start site region 156783
Sfxn2 19 46573365 to 46596898 23533 + protein coding gene sideroflexin 2
Tssr156784 19 46573422 to 46573436 14 + TSS region transcription start site region 156784
Tssr156785 19 46595123 to 46595126 3 + TSS region transcription start site region 156785
Cpgi11008 19 46598830 to 46599689 859 CpG island CpG island 11008
Tssr156786 19 46599081 to 46599150 69 + TSS region transcription start site region 156786
Wbp1l 19 46599106 to 46657389 58283 + protein coding gene WW domain binding protein 1 like
Tssr156787 19 46599152 to 46599178 26 + TSS region transcription start site region 156787
Tssr156788 19 46612485 to 46612494 9 + TSS region transcription start site region 156788
Tssr156789 19 46618647 to 46618653 6 + TSS region transcription start site region 156789
Cpgi11009 19 46618961 to 46619263 302 CpG island CpG island 11009
Tssr159657 19 46619960 to 46619970 10 - TSS region transcription start site region 159657
Tssr159658 19 46619971 to 46620001 30 - TSS region transcription start site region 159658
Tssr156790 19 46623387 to 46623451 64 + TSS region transcription start site region 156790
Tssr156791 19 46624370 to 46624386 16 + TSS region transcription start site region 156791
Tssr5539 19 46635823 to 46635831 8 + TSS region transcription start site region 5539
Tssr156792 19 46652722 to 46652740 18 + TSS region transcription start site region 156792
Tssr156793 19 46654003 to 46654027 24 + TSS region transcription start site region 156793
Tssr156794 19 46654033 to 46654041 8 + TSS region transcription start site region 156794
Tssr156795 19 46654105 to 46654134 29 + TSS region transcription start site region 156795
Tssr156796 19 46654371 to 46654418 47 + TSS region transcription start site region 156796
Tssr156797 19 46654610 to 46654636 26 + TSS region transcription start site region 156797
Tssr156798 19 46654821 to 46654843 22 + TSS region transcription start site region 156798
Tssr5540 19 46654921 to 46654959 38 - TSS region transcription start site region 5540
Tssr156799 19 46654929 to 46654959 30 + TSS region transcription start site region 156799
Gm36602 19 46657734 to 46666450 8716 - lncRNA gene predicted gene, 36602
Cyp17a1 19 46667165 to 46672974 5809 - protein coding gene cytochrome P450, family 17, subfamily a, polypeptide 1
Tssr156800 19 46668587 to 46668603 16 + TSS region transcription start site region 156800
Gm41857 19 46668680 to 46676083 7403 + lncRNA gene predicted gene, 41857
Tssr156801 19 46669272 to 46669274 2 + TSS region transcription start site region 156801
Tssr159659 19 46670711 to 46670721 10 - TSS region transcription start site region 159659
Tssr159660 19 46672883 to 46672900 17 - TSS region transcription start site region 159660
Tssr159661 19 46673063 to 46673072 9 - TSS region transcription start site region 159661
Gm6967 19 46674273 to 46675279 1006 - pseudogene predicted gene 6967
Tssr159662 19 46675344 to 46675354 10 - TSS region transcription start site region 159662
Cpgi11010 19 46689691 to 46690352 661 CpG island CpG island 11010
Tssr156802 19 46689902 to 46689943 41 + TSS region transcription start site region 156802
Borcs7 19 46689906 to 46703382 13476 + protein coding gene BLOC-1 related complex subunit 7
Tssr159663 19 46690138 to 46690173 35 - TSS region transcription start site region 159663
Tssr159664 19 46701344 to 46701383 39 - TSS region transcription start site region 159664
Cpgi11011 19 46707339 to 46707628 289 CpG island CpG island 11011
As3mt 19 46707443 to 46741095 33652 + protein coding gene arsenic (+3 oxidation state) methyltransferase
Tssr156803 19 46707449 to 46707511 62 + TSS region transcription start site region 156803
Tssr156804 19 46707658 to 46707708 50 + TSS region transcription start site region 156804
Tssr156805 19 46707721 to 46707732 11 + TSS region transcription start site region 156805
Tssr156806 19 46707735 to 46707758 23 + TSS region transcription start site region 156806
Gm10199 19 46760439 to 46763466 3027 unclassified gene predicted gene 10199
Cpgi11012 19 46760765 to 46763322 2557 CpG island CpG island 11012
Tssr159665 19 46761201 to 46761215 14 - TSS region transcription start site region 159665
Tssr159666 19 46761248 to 46761263 15 - TSS region transcription start site region 159666
Tssr156807 19 46761402 to 46761416 14 + TSS region transcription start site region 156807
Cnnm2 19 46761564 to 46878580 117016 + protein coding gene cyclin M2
Tssr156808 19 46761578 to 46761618 40 + TSS region transcription start site region 156808
Tssr156809 19 46761627 to 46761638 11 + TSS region transcription start site region 156809
Tssr156810 19 46761639 to 46761656 17 + TSS region transcription start site region 156810
Tssr156811 19 46761827 to 46761849 22 + TSS region transcription start site region 156811
Tssr156812 19 46763427 to 46763431 4 + TSS region transcription start site region 156812