Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:46319693-46589705

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107 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Psd 19 46312087 to 46327156 15069 - protein coding gene pleckstrin and Sec7 domain containing
Tssr159626 19 46324697 to 46324728 31 - TSS region transcription start site region 159626
Tssr159627 19 46324829 to 46324845 16 - TSS region transcription start site region 159627
Cpgi10994 19 46326146 to 46327340 1194 CpG island CpG island 10994
Tssr159628 19 46326189 to 46326211 22 - TSS region transcription start site region 159628
Tssr159629 19 46326220 to 46326277 57 - TSS region transcription start site region 159629
Tssr159630 19 46326543 to 46326598 55 - TSS region transcription start site region 159630
Tssr159631 19 46327052 to 46327057 5 - TSS region transcription start site region 159631
Tssr159632 19 46327106 to 46327114 8 - TSS region transcription start site region 159632
Tssr159633 19 46327121 to 46327154 33 - TSS region transcription start site region 159633
Tssr159634 19 46327164 to 46327173 9 - TSS region transcription start site region 159634
Cpgi10995 19 46328093 to 46329671 1578 CpG island CpG island 10995
Tssr156743 19 46328179 to 46328205 26 + TSS region transcription start site region 156743
Fbxl15 19 46328184 to 46330446 2262 + protein coding gene F-box and leucine-rich repeat protein 15
Tssr156744 19 46328221 to 46328232 11 + TSS region transcription start site region 156744
Tssr159635 19 46328432 to 46328452 20 - TSS region transcription start site region 159635
Tssr156745 19 46328448 to 46328474 26 + TSS region transcription start site region 156745
Tssr156746 19 46328703 to 46328768 65 + TSS region transcription start site region 156746
Cuedc2 19 46329812 to 46338660 8848 - protein coding gene CUE domain containing 2
Cpgi10996 19 46329982 to 46330293 311 CpG island CpG island 10996
Tssr159636 19 46332695 to 46332708 13 - TSS region transcription start site region 159636
Tssr159637 19 46332776 to 46332791 15 - TSS region transcription start site region 159637
Tssr159638 19 46332799 to 46332810 11 - TSS region transcription start site region 159638
Tssr159639 19 46332870 to 46332903 33 - TSS region transcription start site region 159639
Tssr159640 19 46332914 to 46332928 14 - TSS region transcription start site region 159640
Gm26792 19 46335287 to 46338538 3251 + lincRNA gene predicted gene, 26792
Tssr159641 19 46338374 to 46338403 29 - TSS region transcription start site region 159641
Cpgi10997 19 46338406 to 46338726 320 CpG island CpG island 10997
Tssr159642 19 46338589 to 46338630 41 - TSS region transcription start site region 159642
Tssr159643 19 46338632 to 46338670 38 - TSS region transcription start site region 159643
Gm36493 19 46338776 to 46344131 5355 + lncRNA gene predicted gene, 36493
31.MMHAP38FLC4 19 46338820 to 46338995 175 DNA segment DNA segment, 31.MMHAP38FLC4
Tssr156747 19 46341118 to 46341122 4 + TSS region transcription start site region 156747
Mir146b 19 46342762 to 46342870 108 + miRNA gene microRNA 146b
2310034G01Rik 19 46348201 to 46348988 787 - lincRNA gene RIKEN cDNA 2310034G01 gene
Cpgi10998 19 46348591 to 46349916 1325 CpG island CpG island 10998
Tssr159644 19 46348968 to 46349001 33 - TSS region transcription start site region 159644
Tssr5536 19 46349043 to 46349103 60 + TSS region transcription start site region 5536
Tssr159645 19 46350246 to 46350279 33 - TSS region transcription start site region 159645
Cpgi10999 19 46356701 to 46357138 437 CpG island CpG island 10999
Mfsd13a 19 46356877 to 46375254 18377 + protein coding gene major facilitator superfamily domain containing 13a
Tssr156748 19 46356897 to 46356942 45 + TSS region transcription start site region 156748
Tssr5537 19 46356946 to 46356949 3 + TSS region transcription start site region 5537
Gm24610 19 46359036 to 46359144 108 + snoRNA gene predicted gene, 24610
Cpgi11000 19 46367871 to 46368254 383 CpG island CpG island 11000
Tssr156749 19 46367978 to 46367988 10 + TSS region transcription start site region 156749
Tssr156750 19 46369252 to 46369277 25 + TSS region transcription start site region 156750
Actr1a 19 46376814 to 46395735 18921 - protein coding gene ARP1 actin-related protein 1A, centractin alpha
Tssr159646 19 46377994 to 46378024 30 - TSS region transcription start site region 159646
Tssr159647 19 46378151 to 46378196 45 - TSS region transcription start site region 159647
Tssr159648 19 46379473 to 46379477 4 - TSS region transcription start site region 159648
Tssr159649 19 46380965 to 46380969 4 - TSS region transcription start site region 159649
Cpgi11001 19 46394827 to 46395902 1075 CpG island CpG island 11001
Tssr156751 19 46395353 to 46395365 12 + TSS region transcription start site region 156751
Tssr156752 19 46395374 to 46395393 19 + TSS region transcription start site region 156752
Tssr159650 19 46395722 to 46395756 34 - TSS region transcription start site region 159650
Cpgi11002 19 46396690 to 46397425 735 CpG island CpG island 11002
Tssr156753 19 46396885 to 46396999 114 + TSS region transcription start site region 156753
Sufu 19 46396896 to 46488804 91908 + protein coding gene SUFU negative regulator of hedgehog signaling
Tssr156754 19 46397009 to 46397033 24 + TSS region transcription start site region 156754
9430020M11Rik 19 46426854 to 46427655 801 unclassified gene RIKEN cDNA 9430020M11 gene
Tssr156755 19 46454693 to 46454705 12 + TSS region transcription start site region 156755
Tssr156756 19 46463942 to 46463944 2 + TSS region transcription start site region 156756
Cpgi11003 19 46499809 to 46500513 704 CpG island CpG island 11003
Tssr156757 19 46500042 to 46500056 14 + TSS region transcription start site region 156757
Tssr156758 19 46500167 to 46500197 30 + TSS region transcription start site region 156758
Tssr156759 19 46500201 to 46500230 29 + TSS region transcription start site region 156759
Tssr156760 19 46500234 to 46500259 25 + TSS region transcription start site region 156760
Tssr156761 19 46500611 to 46500651 40 + TSS region transcription start site region 156761
Tssr156762 19 46500756 to 46500770 14 + TSS region transcription start site region 156762
Cpgi11004 19 46500770 to 46503221 2451 CpG island CpG island 11004
Tssr156763 19 46500826 to 46500837 11 + TSS region transcription start site region 156763
Tssr159651 19 46500940 to 46500945 5 - TSS region transcription start site region 159651
Tssr156764 19 46500988 to 46501000 12 + TSS region transcription start site region 156764
Tssr156765 19 46501167 to 46501197 30 + TSS region transcription start site region 156765
Tssr156766 19 46501431 to 46501471 40 + TSS region transcription start site region 156766
Gm9798 19 46501647 to 46502781 1134 unclassified gene predicted gene 9798
Trim8 19 46501648 to 46516444 14796 + protein coding gene tripartite motif-containing 8
Tssr156767 19 46501664 to 46501675 11 + TSS region transcription start site region 156767
Tssr156768 19 46501685 to 46501707 22 + TSS region transcription start site region 156768
Tssr156769 19 46501715 to 46501733 18 + TSS region transcription start site region 156769
Tssr156770 19 46501738 to 46501773 35 + TSS region transcription start site region 156770
Tssr156771 19 46501790 to 46501802 12 + TSS region transcription start site region 156771
Tssr156772 19 46501812 to 46501832 20 + TSS region transcription start site region 156772
Tssr156773 19 46502290 to 46502325 35 + TSS region transcription start site region 156773
Tssr156774 19 46502880 to 46502912 32 + TSS region transcription start site region 156774
Tssr159652 19 46502936 to 46502950 14 - TSS region transcription start site region 159652
Tssr159653 19 46503676 to 46503696 20 - TSS region transcription start site region 159653
Tssr156775 19 46511154 to 46511158 4 + TSS region transcription start site region 156775
Tssr156776 19 46514616 to 46514631 15 + TSS region transcription start site region 156776
Cpgi11005 19 46515013 to 46515667 654 CpG island CpG island 11005
Tssr156777 19 46515322 to 46515340 18 + TSS region transcription start site region 156777
Tssr156778 19 46515714 to 46515762 48 + TSS region transcription start site region 156778
Tssr156779 19 46515839 to 46515856 17 + TSS region transcription start site region 156779
Tssr156780 19 46516153 to 46516179 26 + TSS region transcription start site region 156780
Tssr156781 19 46516187 to 46516203 16 + TSS region transcription start site region 156781
Tssr156782 19 46516253 to 46516309 56 + TSS region transcription start site region 156782
Cpgi11006 19 46528646 to 46529024 378 CpG island CpG island 11006
Arl3 19 46531109 to 46573085 41976 - protein coding gene ADP-ribosylation factor-like 3
Tssr159654 19 46558297 to 46558333 36 - TSS region transcription start site region 159654
Tssr5538 19 46558774 to 46558800 26 - TSS region transcription start site region 5538
Cpgi11007 19 46572599 to 46573925 1326 CpG island CpG island 11007
Tssr159655 19 46573059 to 46573082 23 - TSS region transcription start site region 159655
Tssr159656 19 46573096 to 46573207 111 - TSS region transcription start site region 159656
Tssr156783 19 46573362 to 46573421 59 + TSS region transcription start site region 156783
Sfxn2 19 46573365 to 46596898 23533 + protein coding gene sideroflexin 2
Tssr156784 19 46573422 to 46573436 14 + TSS region transcription start site region 156784