Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:46311877-46420254

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69 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Nfkb2 19 46304737 to 46312090 7353 + protein coding gene nuclear factor of kappa light polypeptide gene enhancer in B cells 2, p49/p100
Psd 19 46312087 to 46327156 15069 - protein coding gene pleckstrin and Sec7 domain containing
Tssr159620 19 46312369 to 46312385 16 - TSS region transcription start site region 159620
Cpgi10992 19 46314633 to 46314803 170 CpG island CpG island 10992
Cpgi10993 19 46316949 to 46318587 1638 CpG island CpG island 10993
Tssr159621 19 46317957 to 46317960 3 - TSS region transcription start site region 159621
Tssr159622 19 46317962 to 46317965 3 - TSS region transcription start site region 159622
Tssr159623 19 46317982 to 46318062 80 - TSS region transcription start site region 159623
Tssr159624 19 46318066 to 46318077 11 - TSS region transcription start site region 159624
Tssr159625 19 46318123 to 46318147 24 - TSS region transcription start site region 159625
Tssr159626 19 46324697 to 46324728 31 - TSS region transcription start site region 159626
Tssr159627 19 46324829 to 46324845 16 - TSS region transcription start site region 159627
Cpgi10994 19 46326146 to 46327340 1194 CpG island CpG island 10994
Tssr159628 19 46326189 to 46326211 22 - TSS region transcription start site region 159628
Tssr159629 19 46326220 to 46326277 57 - TSS region transcription start site region 159629
Tssr159630 19 46326543 to 46326598 55 - TSS region transcription start site region 159630
Tssr159631 19 46327052 to 46327057 5 - TSS region transcription start site region 159631
Tssr159632 19 46327106 to 46327114 8 - TSS region transcription start site region 159632
Tssr159633 19 46327121 to 46327154 33 - TSS region transcription start site region 159633
Tssr159634 19 46327164 to 46327173 9 - TSS region transcription start site region 159634
Cpgi10995 19 46328093 to 46329671 1578 CpG island CpG island 10995
Tssr156743 19 46328179 to 46328205 26 + TSS region transcription start site region 156743
Fbxl15 19 46328184 to 46330446 2262 + protein coding gene F-box and leucine-rich repeat protein 15
Tssr156744 19 46328221 to 46328232 11 + TSS region transcription start site region 156744
Tssr159635 19 46328432 to 46328452 20 - TSS region transcription start site region 159635
Tssr156745 19 46328448 to 46328474 26 + TSS region transcription start site region 156745
Tssr156746 19 46328703 to 46328768 65 + TSS region transcription start site region 156746
Cuedc2 19 46329812 to 46338660 8848 - protein coding gene CUE domain containing 2
Cpgi10996 19 46329982 to 46330293 311 CpG island CpG island 10996
Tssr159636 19 46332695 to 46332708 13 - TSS region transcription start site region 159636
Tssr159637 19 46332776 to 46332791 15 - TSS region transcription start site region 159637
Tssr159638 19 46332799 to 46332810 11 - TSS region transcription start site region 159638
Tssr159639 19 46332870 to 46332903 33 - TSS region transcription start site region 159639
Tssr159640 19 46332914 to 46332928 14 - TSS region transcription start site region 159640
Gm26792 19 46335287 to 46338538 3251 + lincRNA gene predicted gene, 26792
Tssr159641 19 46338374 to 46338403 29 - TSS region transcription start site region 159641
Cpgi10997 19 46338406 to 46338726 320 CpG island CpG island 10997
Tssr159642 19 46338589 to 46338630 41 - TSS region transcription start site region 159642
Tssr159643 19 46338632 to 46338670 38 - TSS region transcription start site region 159643
Gm36493 19 46338776 to 46344131 5355 + lncRNA gene predicted gene, 36493
31.MMHAP38FLC4 19 46338820 to 46338995 175 DNA segment DNA segment, 31.MMHAP38FLC4
Tssr156747 19 46341118 to 46341122 4 + TSS region transcription start site region 156747
Mir146b 19 46342762 to 46342870 108 + miRNA gene microRNA 146b
2310034G01Rik 19 46348201 to 46348988 787 - lincRNA gene RIKEN cDNA 2310034G01 gene
Cpgi10998 19 46348591 to 46349916 1325 CpG island CpG island 10998
Tssr159644 19 46348968 to 46349001 33 - TSS region transcription start site region 159644
Tssr5536 19 46349043 to 46349103 60 + TSS region transcription start site region 5536
Tssr159645 19 46350246 to 46350279 33 - TSS region transcription start site region 159645
Cpgi10999 19 46356701 to 46357138 437 CpG island CpG island 10999
Mfsd13a 19 46356877 to 46375254 18377 + protein coding gene major facilitator superfamily domain containing 13a
Tssr156748 19 46356897 to 46356942 45 + TSS region transcription start site region 156748
Tssr5537 19 46356946 to 46356949 3 + TSS region transcription start site region 5537
Gm24610 19 46359036 to 46359144 108 + snoRNA gene predicted gene, 24610
Cpgi11000 19 46367871 to 46368254 383 CpG island CpG island 11000
Tssr156749 19 46367978 to 46367988 10 + TSS region transcription start site region 156749
Tssr156750 19 46369252 to 46369277 25 + TSS region transcription start site region 156750
Actr1a 19 46376814 to 46395735 18921 - protein coding gene ARP1 actin-related protein 1A, centractin alpha
Tssr159646 19 46377994 to 46378024 30 - TSS region transcription start site region 159646
Tssr159647 19 46378151 to 46378196 45 - TSS region transcription start site region 159647
Tssr159648 19 46379473 to 46379477 4 - TSS region transcription start site region 159648
Tssr159649 19 46380965 to 46380969 4 - TSS region transcription start site region 159649
Cpgi11001 19 46394827 to 46395902 1075 CpG island CpG island 11001
Tssr156751 19 46395353 to 46395365 12 + TSS region transcription start site region 156751
Tssr156752 19 46395374 to 46395393 19 + TSS region transcription start site region 156752
Tssr159650 19 46395722 to 46395756 34 - TSS region transcription start site region 159650
Cpgi11002 19 46396690 to 46397425 735 CpG island CpG island 11002
Tssr156753 19 46396885 to 46396999 114 + TSS region transcription start site region 156753
Sufu 19 46396896 to 46488804 91908 + protein coding gene SUFU negative regulator of hedgehog signaling
Tssr156754 19 46397009 to 46397033 24 + TSS region transcription start site region 156754