Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:45804208-46274229

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100 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
In(19Fgf8-Pitx3)1Fsp 19 45736798 to 46148326 411528 chromosomal inversion inversion, Chr 19, Francois Spitz 1
sgl 19 45787633 to 45888656 101023 heritable phenotypic marker scraggly
Kcnip2 19 45792346 to 45816432 24086 - protein coding gene Kv channel-interacting protein 2
Cpgi10976 19 45812148 to 45812371 223 CpG island CpG island 10976
Tssr159578 19 45812293 to 45812307 14 - TSS region transcription start site region 159578
Tssr159579 19 45812380 to 45812389 9 - TSS region transcription start site region 159579
Cpgi10977 19 45815739 to 45815915 176 CpG island CpG island 10977
Tssr159580 19 45816007 to 45816076 69 - TSS region transcription start site region 159580
Tssr159581 19 45816239 to 45816252 13 - TSS region transcription start site region 159581
Tssr159582 19 45816378 to 45816397 19 - TSS region transcription start site region 159582
Armh3 19 45818144 to 45998488 180344 - protein coding gene armadillo-like helical domain containing 3
Tssr159583 19 45840010 to 45840017 7 - TSS region transcription start site region 159583
Cpgi10978 19 45843569 to 45843759 190 CpG island CpG island 10978
D19Ertd132e 19 45857098 to 45857297 199 DNA segment DNA segment, Chr 19, ERATO Doi 132, expressed
D19Dcr88 19 45857428 to 45857524 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 88
A102 19 45871337 to 45871580 243 DNA segment DNA segment, A102
Gm6813 19 45877611 to 45878164 553 - pseudogene predicted gene 6813
Tssr159584 19 45878157 to 45878165 8 - TSS region transcription start site region 159584
D19Mit102 19 45888507 to 45888656 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 102
Tssr159585 19 45903817 to 45903821 4 - TSS region transcription start site region 159585
A085 19 45914478 to 45914657 179 DNA segment DNA segment, A085
A097 19 45938290 to 45938526 236 DNA segment DNA segment, A097
A105 19 45987142 to 45987347 205 DNA segment DNA segment, A105
Cpgi10979 19 45997859 to 45998806 947 CpG island CpG island 10979
Tssr156701 19 45998131 to 45998142 11 + TSS region transcription start site region 156701
4930505N22Rik 19 45998137 to 46013386 15249 + lincRNA gene RIKEN cDNA 4930505N22 gene
Tssr156702 19 45998143 to 45998153 10 + TSS region transcription start site region 156702
Tssr159586 19 45998222 to 45998229 7 - TSS region transcription start site region 159586
Tssr159587 19 45998449 to 45998478 29 - TSS region transcription start site region 159587
Tssr159588 19 45998479 to 45998521 42 - TSS region transcription start site region 159588
Cpgi10980 19 46003249 to 46004441 1192 CpG island CpG island 10980
Tssr156703 19 46003468 to 46003547 79 + TSS region transcription start site region 156703
Hps6 19 46003478 to 46006173 2695 + protein coding gene HPS6, biogenesis of lysosomal organelles complex 2 subunit 3
A091 19 46028411 to 46028600 189 DNA segment DNA segment, A091
Tssr159589 19 46031570 to 46031574 4 - TSS region transcription start site region 159589
Ldb1 19 46032593 to 46045214 12621 - protein coding gene LIM domain binding 1
Tssr159590 19 46033202 to 46033225 23 - TSS region transcription start site region 159590
A116 19 46033643 to 46033888 245 DNA segment DNA segment, A116
Tssr159591 19 46039176 to 46039189 13 - TSS region transcription start site region 159591
Tssr159592 19 46039208 to 46039229 21 - TSS region transcription start site region 159592
Cpgi10981 19 46039426 to 46039911 485 CpG island CpG island 10981
Tssr159593 19 46039442 to 46039455 13 - TSS region transcription start site region 159593
Tssr159594 19 46039537 to 46039601 64 - TSS region transcription start site region 159594
Tssr159595 19 46039629 to 46039662 33 - TSS region transcription start site region 159595
Tssr159596 19 46040365 to 46040377 12 - TSS region transcription start site region 159596
Cpgi10982 19 46044500 to 46045919 1419 CpG island CpG island 10982
Tssr159597 19 46044979 to 46044988 9 - TSS region transcription start site region 159597
Tssr159598 19 46044992 to 46045127 135 - TSS region transcription start site region 159598
Tssr159599 19 46045132 to 46045151 19 - TSS region transcription start site region 159599
Tssr159600 19 46045194 to 46045222 28 - TSS region transcription start site region 159600
Tssr159601 19 46045224 to 46045244 20 - TSS region transcription start site region 159601
Tssr159602 19 46045307 to 46045318 11 - TSS region transcription start site region 159602
Tssr159603 19 46045331 to 46045347 16 - TSS region transcription start site region 159603
Tssr159604 19 46045349 to 46045360 11 - TSS region transcription start site region 159604
Tssr159605 19 46045362 to 46045386 24 - TSS region transcription start site region 159605
Tssr159606 19 46045389 to 46045400 11 - TSS region transcription start site region 159606
Tssr159607 19 46045490 to 46045521 31 - TSS region transcription start site region 159607
Tssr159608 19 46045533 to 46045542 9 - TSS region transcription start site region 159608
Cpgi10983 19 46056402 to 46057404 1002 CpG island CpG island 10983
Pprc1 19 46056525 to 46072909 16384 + protein coding gene peroxisome proliferative activated receptor, gamma, coactivator-related 1
Tssr156704 19 46056554 to 46056586 32 + TSS region transcription start site region 156704
43.MMHAP10FG4.seq 19 46056814 to 46057009 195 DNA segment DNA segment, 43.MMHAP10FG4.seq
Tssr156705 19 46057286 to 46057311 25 + TSS region transcription start site region 156705
Tssr156706 19 46064079 to 46064087 8 + TSS region transcription start site region 156706
Tssr156707 19 46064155 to 46064174 19 + TSS region transcription start site region 156707
Tssr156708 19 46064421 to 46064425 4 + TSS region transcription start site region 156708
Cpgi10984 19 46075540 to 46076506 966 CpG island CpG island 10984
Tssr156709 19 46075842 to 46075859 17 + TSS region transcription start site region 156709
Nolc1 19 46075863 to 46085530 9667 + protein coding gene nucleolar and coiled-body phosphoprotein 1
Tssr156710 19 46075939 to 46075946 7 + TSS region transcription start site region 156710
Tssr156711 19 46075978 to 46075991 13 + TSS region transcription start site region 156711
Tssr156712 19 46075999 to 46076020 21 + TSS region transcription start site region 156712
Tssr156713 19 46083065 to 46083076 11 + TSS region transcription start site region 156713
Tssr156714 19 46083109 to 46083122 13 + TSS region transcription start site region 156714
A039 19 46089001 to 46089192 191 DNA segment DNA segment, A039
D19Dcr35 19 46090901 to 46090996 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 35
Tssr156715 19 46108931 to 46108944 13 + TSS region transcription start site region 156715
A013 19 46124828 to 46125019 191 DNA segment DNA segment, A013
Tssr156716 19 46131888 to 46131904 16 + TSS region transcription start site region 156716
Elovl3 19 46131897 to 46135307 3410 + protein coding gene elongation of very long chain fatty acids (FEN1/Elo2, SUR4/Elo3, yeast)-like 3
Cpgi10985 19 46135393 to 46137551 2158 CpG island CpG island 10985
Pitx3 19 46135685 to 46148326 12641 - protein coding gene paired-like homeodomain transcription factor 3
Cpgi10986 19 46147388 to 46148966 1578 CpG island CpG island 10986
Tssr159609 19 46148249 to 46148255 6 - TSS region transcription start site region 159609
Tssr159610 19 46148369 to 46148386 17 - TSS region transcription start site region 159610
Cpgi10987 19 46152247 to 46152918 671 CpG island CpG island 10987
Tssr156717 19 46152505 to 46152514 9 + TSS region transcription start site region 156717
Gbf1 19 46152509 to 46286510 134001 + protein coding gene golgi-specific brefeldin A-resistance factor 1
Tssr156718 19 46152523 to 46152566 43 + TSS region transcription start site region 156718
D430033H22Rik 19 46180482 to 46185808 5326 unclassified gene RIKEN cDNA D430033H22 gene
Tssr159611 19 46186827 to 46186833 6 - TSS region transcription start site region 159611
Gm8974 19 46205380 to 46205858 478 - pseudogene predicted gene 8974
C130013I19Rik 19 46213098 to 46215984 2886 unclassified gene RIKEN cDNA C130013I19 gene
Tssr156719 19 46219733 to 46219734 1 + TSS region transcription start site region 156719
Tssr156720 19 46227826 to 46227830 4 + TSS region transcription start site region 156720
Gm16726 19 46264539 to 46267669 3130 - unclassified non-coding RNA gene predicted gene, 16726
Tssr159612 19 46267674 to 46267702 28 - TSS region transcription start site region 159612
Tssr159613 19 46267708 to 46267715 7 - TSS region transcription start site region 159613
Tssr5535 19 46267835 to 46267838 3 + TSS region transcription start site region 5535
Tssr156721 19 46267841 to 46267852 11 + TSS region transcription start site region 156721