Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:45052766-46034997

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193 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Sfxn3 19 45047576 to 45056383 8807 + protein coding gene sideroflexin 3
Tssr156665 19 45055294 to 45055308 14 + TSS region transcription start site region 156665
Tssr156666 19 45055359 to 45055373 14 + TSS region transcription start site region 156666
Tssr156667 19 45055563 to 45055575 12 + TSS region transcription start site region 156667
Tssr156668 19 45055703 to 45055735 32 + TSS region transcription start site region 156668
Cpgi10933 19 45058236 to 45058837 601 CpG island CpG island 10933
Tssr5532 19 45058274 to 45058287 13 - TSS region transcription start site region 5532
Tssr5533 19 45058308 to 45058333 25 - TSS region transcription start site region 5533
Tssr156669 19 45058695 to 45058750 55 + TSS region transcription start site region 156669
Gm35782 19 45060632 to 45075109 14477 - lncRNA gene predicted gene, 35782
Cpgi10934 19 45065368 to 45065715 347 CpG island CpG island 10934
Cpgi10935 19 45074540 to 45075636 1096 CpG island CpG island 10935
Tssr159545 19 45075136 to 45075160 24 - TSS region transcription start site region 159545
Tssr159546 19 45075167 to 45075200 33 - TSS region transcription start site region 159546
Kazald1 19 45075241 to 45079289 4048 + protein coding gene Kazal-type serine peptidase inhibitor domain 1
Cpgi10936 19 45075915 to 45076068 153 CpG island CpG island 10936
Tssr156670 19 45076087 to 45076090 3 + TSS region transcription start site region 156670
Tssr156671 19 45076105 to 45076111 6 + TSS region transcription start site region 156671
Cpgi10937 19 45076117 to 45077863 1746 CpG island CpG island 10937
Tssr156672 19 45076191 to 45076195 4 + TSS region transcription start site region 156672
Tssr156673 19 45076636 to 45076644 8 + TSS region transcription start site region 156673
Tssr156674 19 45076684 to 45076702 18 + TSS region transcription start site region 156674
Tssr156675 19 45076707 to 45076727 20 + TSS region transcription start site region 156675
Tssr156676 19 45076899 to 45076939 40 + TSS region transcription start site region 156676
Cpgi10938 19 45079720 to 45080967 1247 CpG island CpG island 10938
4930557B21Rik 19 45080007 to 45080582 575 unclassified gene RIKEN cDNA 4930557B21 gene
Tssr156677 19 45087037 to 45087049 12 + TSS region transcription start site region 156677
Gm35867 19 45103108 to 45106404 3296 + lncRNA gene predicted gene, 35867
Cpgi10939 19 45143218 to 45143951 733 CpG island CpG island 10939
Gm35923 19 45144743 to 45146954 2211 - lncRNA gene predicted gene, 35923
Tssr156678 19 45149833 to 45149878 45 + TSS region transcription start site region 156678
Cpgi10940 19 45150471 to 45151686 1215 CpG island CpG island 10940
Tssr159547 19 45150503 to 45150537 34 - TSS region transcription start site region 159547
Tssr156679 19 45150659 to 45150696 37 + TSS region transcription start site region 156679
Tlx1 19 45150680 to 45156943 6263 + protein coding gene T cell leukemia, homeobox 1
Tssr156680 19 45150786 to 45150814 28 + TSS region transcription start site region 156680
Tssr156681 19 45151594 to 45151595 1 + TSS region transcription start site region 156681
Femwf11 19 45151909 to 45152019 110 QTL femur work to failure 11
D19Mit53 19 45151909 to 45152019 110 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 53
Cpgi10941 19 45153206 to 45154746 1540 CpG island CpG island 10941
Tlx1os 19 45154057 to 45159304 5247 - antisense lncRNA gene T cell leukemia, homeobox 1, opposite strand
Cpgi10942 19 45155791 to 45156280 489 CpG island CpG island 10942
Cpgi10943 19 45158978 to 45159428 450 CpG island CpG island 10943
Tssr159548 19 45159302 to 45159312 10 - TSS region transcription start site region 159548
Cpgi10944 19 45163188 to 45163339 151 CpG island CpG island 10944
Cpgi10945 19 45176939 to 45177111 172 CpG island CpG island 10945
Cpgi10946 19 45208265 to 45208502 237 CpG island CpG island 10946
Cpgi10947 19 45221272 to 45221533 261 CpG island CpG island 10947
Cpgi10948 19 45223824 to 45224403 579 CpG island CpG island 10948
Cpgi10949 19 45229179 to 45229738 559 CpG island CpG island 10949
Cpgi10950 19 45230106 to 45230479 373 CpG island CpG island 10950
Cpgi10951 19 45230930 to 45231883 953 CpG island CpG island 10951
Lbx1 19 45232684 to 45235812 3128 - protein coding gene ladybird homeobox 1
Dp(19Lbx1-Fgf8)2Fsp 19 45232684 to 45742915 510231 chromosomal duplication duplication, Chr 19, Francois Spitz 2
Dp(19Lbx1-Fbxw4)3Fsp 19 45232684 to 45660312 427628 chromosomal duplication duplication, Chr 19, Francois Spitz 3
Del(19Lbx1-Poll)6Fsp 19 45232684 to 45560531 327847 chromosomal deletion deletion, Chr 19, Francois Spitz 6
Cpgi10952 19 45233252 to 45234417 1165 CpG island CpG island 10952
Cpgi10953 19 45234649 to 45236931 2282 CpG island CpG island 10953
Tssr156682 19 45235605 to 45235610 5 + TSS region transcription start site region 156682
Tssr159549 19 45236827 to 45236872 45 - TSS region transcription start site region 159549
Cpgi10954 19 45244117 to 45244496 379 CpG island CpG island 10954
Cpgi10955 19 45248634 to 45248971 337 CpG island CpG island 10955
D19Dcr87 19 45268738 to 45268832 94 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 87
Cpgi10956 19 45293585 to 45293907 322 CpG island CpG island 10956
Gm29595 19 45300458 to 45303246 2788 - lincRNA gene predicted gene 29595
Cpgi10957 19 45300987 to 45301422 435 CpG island CpG island 10957
Cpgi10958 19 45301518 to 45302486 968 CpG island CpG island 10958
Gm29593 19 45311300 to 45312247 947 - lincRNA gene predicted gene 29593
Gm29594 19 45317893 to 45318429 536 + lincRNA gene predicted gene 29594
Gm28578 19 45329629 to 45338323 8694 - lincRNA gene predicted gene 28578
Cpgi10959 19 45329782 to 45329964 182 CpG island CpG island 10959
Tssr159550 19 45338314 to 45338324 10 - TSS region transcription start site region 159550
Cpgi10960 19 45339416 to 45339586 170 CpG island CpG island 10960
Tssr159551 19 45352812 to 45352817 5 - TSS region transcription start site region 159551
1700016H03Rik 19 45363213 to 45363649 436 - antisense lncRNA gene RIKEN cDNA 1700016H03 gene
Cpgi10961 19 45363397 to 45364313 916 CpG island CpG island 10961
Btrc 19 45363734 to 45530013 166279 + protein coding gene beta-transducin repeat containing protein
Tssr156683 19 45363744 to 45363831 87 + TSS region transcription start site region 156683
Tssr156684 19 45364078 to 45364111 33 + TSS region transcription start site region 156684
Tssr156685 19 45364189 to 45364204 15 + TSS region transcription start site region 156685
Gm18104 19 45396765 to 45397796 1031 - pseudogene predicted gene, 18104
Tssr159552 19 45441814 to 45441853 39 - TSS region transcription start site region 159552
Tssr156686 19 45445460 to 45445542 82 + TSS region transcription start site region 156686
Tssr156687 19 45445548 to 45445558 10 + TSS region transcription start site region 156687
Gm6807 19 45450308 to 45451195 887 - pseudogene predicted gene 6807
Tssr159553 19 45451211 to 45451237 26 - TSS region transcription start site region 159553
Tssr156688 19 45472732 to 45472741 9 + TSS region transcription start site region 156688
Tssr156689 19 45472755 to 45472771 16 + TSS region transcription start site region 156689
Tssr156690 19 45472795 to 45472813 18 + TSS region transcription start site region 156690
Cpgi10962 19 45476009 to 45476268 259 CpG island CpG island 10962
Cpgi10963 19 45507641 to 45507965 324 CpG island CpG island 10963
Tssr156691 19 45527365 to 45527394 29 + TSS region transcription start site region 156691
Tssr156692 19 45528191 to 45528208 17 + TSS region transcription start site region 156692
Cpgi10964 19 45541191 to 45542174 983 CpG island CpG island 10964
Gm41856 19 45542766 to 45544997 2231 - lncRNA gene predicted gene, 41856
Gm19639 19 45544596 to 45546346 1750 + lncRNA gene predicted gene, 19639
Cpgi10965 19 45544611 to 45545405 794 CpG island CpG island 10965
Tssr5534 19 45545336 to 45545345 9 + TSS region transcription start site region 5534
Tssr156693 19 45545356 to 45545367 11 + TSS region transcription start site region 156693
D19Mit17 19 45551600 to 45551739 139 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 17
Del(19Poll-Fgf8)5Fsp 19 45552275 to 45742915 190640 chromosomal deletion deletion, Chr 19, Francois Spitz 5
Del(19Poll-Fbxw4)4Fsp 19 45552275 to 45660312 108037 chromosomal deletion deletion, Chr 19, Francois Spitz 4
Poll 19 45552275 to 45560531 8256 - protein coding gene polymerase (DNA directed), lambda
Tssr159554 19 45560508 to 45560532 24 - TSS region transcription start site region 159554
Cpgi10966 19 45560559 to 45560838 279 CpG island CpG island 10966
Tssr156694 19 45560569 to 45560644 75 + TSS region transcription start site region 156694
Dpcd 19 45560590 to 45578287 17697 + protein coding gene deleted in primary ciliary dyskinesia
Gm17018 19 45560615 to 45579763 19148 + protein coding gene predicted gene 17018
Tssr156695 19 45575111 to 45575119 8 + TSS region transcription start site region 156695
Tssr156696 19 45575121 to 45575130 9 + TSS region transcription start site region 156696
Tssr156697 19 45575140 to 45575162 22 + TSS region transcription start site region 156697
Fbxw4 19 45578254 to 45660312 82058 - protein coding gene F-box and WD-40 domain protein 4
Tssr159555 19 45591633 to 45591638 5 - TSS region transcription start site region 159555
Tssr159556 19 45591780 to 45591815 35 - TSS region transcription start site region 159556
Tssr159557 19 45591820 to 45591878 58 - TSS region transcription start site region 159557
Tssr159558 19 45591899 to 45591910 11 - TSS region transcription start site region 159558
Tssr159559 19 45591914 to 45591935 21 - TSS region transcription start site region 159559
Tssr159560 19 45591972 to 45591975 3 - TSS region transcription start site region 159560
Tssr159561 19 45591998 to 45592004 6 - TSS region transcription start site region 159561
Tssr159562 19 45631086 to 45631106 20 - TSS region transcription start site region 159562
Tssr159563 19 45631122 to 45631157 35 - TSS region transcription start site region 159563
Cpgi10967 19 45659282 to 45660756 1474 CpG island CpG island 10967
Tssr159564 19 45660460 to 45660493 33 - TSS region transcription start site region 159564
Tssr159565 19 45660496 to 45660520 24 - TSS region transcription start site region 159565
Cpgi10968 19 45675780 to 45676063 283 CpG island CpG island 10968
Tssr159566 19 45683525 to 45683546 21 - TSS region transcription start site region 159566
Cpgi10969 19 45695502 to 45695711 209 CpG island CpG island 10969
A087 19 45725433 to 45725612 179 DNA segment DNA segment, A087
4933429K18Rik 19 45726555 to 45730558 4003 - lncRNA gene RIKEN cDNA 4933429K18 gene
Fgf8 19 45736798 to 45742915 6117 - protein coding gene fibroblast growth factor 8
In(19Fgf8-Pitx3)1Fsp 19 45736798 to 46148326 411528 chromosomal inversion inversion, Chr 19, Francois Spitz 1
Cpgi10970 19 45736873 to 45737403 530 CpG island CpG island 10970
Cpgi10971 19 45741468 to 45743544 2076 CpG island CpG island 10971
Tssr159567 19 45742856 to 45742863 7 - TSS region transcription start site region 159567
Tssr159568 19 45742882 to 45742899 17 - TSS region transcription start site region 159568
Cpgi10972 19 45745629 to 45746573 944 CpG island CpG island 10972
Npm3 19 45747734 to 45749563 1829 - protein coding gene nucleoplasmin 3
Cpgi10973 19 45748657 to 45749732 1075 CpG island CpG island 10973
Tssr156698 19 45749199 to 45749228 29 + TSS region transcription start site region 156698
Tssr159569 19 45749378 to 45749418 40 - TSS region transcription start site region 159569
Gm15491 19 45749508 to 45752310 2802 + antisense lncRNA gene predicted gene 15491
Tssr159570 19 45749563 to 45749576 13 - TSS region transcription start site region 159570
Tssr156699 19 45749608 to 45749631 23 + TSS region transcription start site region 156699
Oga 19 45750261 to 45783520 33259 - protein coding gene O-GlcNAcase
D19Ertd409e 19 45770608 to 45770856 248 DNA segment DNA segment, Chr 19, ERATO Doi 409, expressed
Tssr159571 19 45777451 to 45777482 31 - TSS region transcription start site region 159571
Cpgi10974 19 45782551 to 45784002 1451 CpG island CpG island 10974
Tssr156700 19 45782883 to 45782905 22 + TSS region transcription start site region 156700
Tssr159572 19 45783221 to 45783246 25 - TSS region transcription start site region 159572
Tssr159573 19 45783485 to 45783496 11 - TSS region transcription start site region 159573
Tssr159574 19 45783500 to 45783511 11 - TSS region transcription start site region 159574
Tssr159575 19 45783512 to 45783558 46 - TSS region transcription start site region 159575
Tssr159576 19 45783791 to 45783813 22 - TSS region transcription start site region 159576
Tssr159577 19 45784040 to 45784051 11 - TSS region transcription start site region 159577
D19Umi1 19 45787633 to 45787808 175 DNA segment DNA segment, Chr 19, University of Michigan 1
sgl 19 45787633 to 45888656 101023 heritable phenotypic marker scraggly
Kcnip2 19 45792346 to 45816432 24086 - protein coding gene Kv channel-interacting protein 2
Cpgi10975 19 45796928 to 45797147 219 CpG island CpG island 10975
Cpgi10976 19 45812148 to 45812371 223 CpG island CpG island 10976
Tssr159578 19 45812293 to 45812307 14 - TSS region transcription start site region 159578
Tssr159579 19 45812380 to 45812389 9 - TSS region transcription start site region 159579
Cpgi10977 19 45815739 to 45815915 176 CpG island CpG island 10977
Tssr159580 19 45816007 to 45816076 69 - TSS region transcription start site region 159580
Tssr159581 19 45816239 to 45816252 13 - TSS region transcription start site region 159581
Tssr159582 19 45816378 to 45816397 19 - TSS region transcription start site region 159582
Armh3 19 45818144 to 45998488 180344 - protein coding gene armadillo-like helical domain containing 3
Tssr159583 19 45840010 to 45840017 7 - TSS region transcription start site region 159583
Cpgi10978 19 45843569 to 45843759 190 CpG island CpG island 10978
D19Ertd132e 19 45857098 to 45857297 199 DNA segment DNA segment, Chr 19, ERATO Doi 132, expressed
D19Dcr88 19 45857428 to 45857524 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 88
A102 19 45871337 to 45871580 243 DNA segment DNA segment, A102
Gm6813 19 45877611 to 45878164 553 - pseudogene predicted gene 6813
Tssr159584 19 45878157 to 45878165 8 - TSS region transcription start site region 159584
D19Mit102 19 45888507 to 45888656 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 102
Tssr159585 19 45903817 to 45903821 4 - TSS region transcription start site region 159585
A085 19 45914478 to 45914657 179 DNA segment DNA segment, A085
A097 19 45938290 to 45938526 236 DNA segment DNA segment, A097
A105 19 45987142 to 45987347 205 DNA segment DNA segment, A105
Cpgi10979 19 45997859 to 45998806 947 CpG island CpG island 10979
Tssr156701 19 45998131 to 45998142 11 + TSS region transcription start site region 156701
4930505N22Rik 19 45998137 to 46013386 15249 + lincRNA gene RIKEN cDNA 4930505N22 gene
Tssr156702 19 45998143 to 45998153 10 + TSS region transcription start site region 156702
Tssr159586 19 45998222 to 45998229 7 - TSS region transcription start site region 159586
Tssr159587 19 45998449 to 45998478 29 - TSS region transcription start site region 159587
Tssr159588 19 45998479 to 45998521 42 - TSS region transcription start site region 159588
Cpgi10980 19 46003249 to 46004441 1192 CpG island CpG island 10980
Tssr156703 19 46003468 to 46003547 79 + TSS region transcription start site region 156703
Hps6 19 46003478 to 46006173 2695 + protein coding gene HPS6, biogenesis of lysosomal organelles complex 2 subunit 3
A091 19 46028411 to 46028600 189 DNA segment DNA segment, A091
Tssr159589 19 46031570 to 46031574 4 - TSS region transcription start site region 159589
Ldb1 19 46032593 to 46045214 12621 - protein coding gene LIM domain binding 1
Tssr159590 19 46033202 to 46033225 23 - TSS region transcription start site region 159590
A116 19 46033643 to 46033888 245 DNA segment DNA segment, A116