Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:45043218-45243951

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67 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdzd7 19 45026906 to 45046614 19708 - protein coding gene PDZ domain containing 7
Cpgi10932 19 45046315 to 45047973 1658 CpG island CpG island 10932
Tssr159544 19 45046618 to 45046645 27 - TSS region transcription start site region 159544
Tssr156661 19 45047557 to 45047572 15 + TSS region transcription start site region 156661
Sfxn3 19 45047576 to 45056383 8807 + protein coding gene sideroflexin 3
Tssr156662 19 45047598 to 45047670 72 + TSS region transcription start site region 156662
Tssr156663 19 45047781 to 45047838 57 + TSS region transcription start site region 156663
Tssr156664 19 45047845 to 45047873 28 + TSS region transcription start site region 156664
Tssr156665 19 45055294 to 45055308 14 + TSS region transcription start site region 156665
Tssr156666 19 45055359 to 45055373 14 + TSS region transcription start site region 156666
Tssr156667 19 45055563 to 45055575 12 + TSS region transcription start site region 156667
Tssr156668 19 45055703 to 45055735 32 + TSS region transcription start site region 156668
Cpgi10933 19 45058236 to 45058837 601 CpG island CpG island 10933
Tssr5532 19 45058274 to 45058287 13 - TSS region transcription start site region 5532
Tssr5533 19 45058308 to 45058333 25 - TSS region transcription start site region 5533
Tssr156669 19 45058695 to 45058750 55 + TSS region transcription start site region 156669
Gm35782 19 45060632 to 45075109 14477 - lncRNA gene predicted gene, 35782
Cpgi10934 19 45065368 to 45065715 347 CpG island CpG island 10934
Cpgi10935 19 45074540 to 45075636 1096 CpG island CpG island 10935
Tssr159545 19 45075136 to 45075160 24 - TSS region transcription start site region 159545
Tssr159546 19 45075167 to 45075200 33 - TSS region transcription start site region 159546
Kazald1 19 45075241 to 45079289 4048 + protein coding gene Kazal-type serine peptidase inhibitor domain 1
Cpgi10936 19 45075915 to 45076068 153 CpG island CpG island 10936
Tssr156670 19 45076087 to 45076090 3 + TSS region transcription start site region 156670
Tssr156671 19 45076105 to 45076111 6 + TSS region transcription start site region 156671
Cpgi10937 19 45076117 to 45077863 1746 CpG island CpG island 10937
Tssr156672 19 45076191 to 45076195 4 + TSS region transcription start site region 156672
Tssr156673 19 45076636 to 45076644 8 + TSS region transcription start site region 156673
Tssr156674 19 45076684 to 45076702 18 + TSS region transcription start site region 156674
Tssr156675 19 45076707 to 45076727 20 + TSS region transcription start site region 156675
Tssr156676 19 45076899 to 45076939 40 + TSS region transcription start site region 156676
Cpgi10938 19 45079720 to 45080967 1247 CpG island CpG island 10938
4930557B21Rik 19 45080007 to 45080582 575 unclassified gene RIKEN cDNA 4930557B21 gene
Tssr156677 19 45087037 to 45087049 12 + TSS region transcription start site region 156677
Gm35867 19 45103108 to 45106404 3296 + lncRNA gene predicted gene, 35867
Cpgi10939 19 45143218 to 45143951 733 CpG island CpG island 10939
Gm35923 19 45144743 to 45146954 2211 - lncRNA gene predicted gene, 35923
Tssr156678 19 45149833 to 45149878 45 + TSS region transcription start site region 156678
Cpgi10940 19 45150471 to 45151686 1215 CpG island CpG island 10940
Tssr159547 19 45150503 to 45150537 34 - TSS region transcription start site region 159547
Tssr156679 19 45150659 to 45150696 37 + TSS region transcription start site region 156679
Tlx1 19 45150680 to 45156943 6263 + protein coding gene T cell leukemia, homeobox 1
Tssr156680 19 45150786 to 45150814 28 + TSS region transcription start site region 156680
Tssr156681 19 45151594 to 45151595 1 + TSS region transcription start site region 156681
Femwf11 19 45151909 to 45152019 110 QTL femur work to failure 11
D19Mit53 19 45151909 to 45152019 110 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 53
Cpgi10941 19 45153206 to 45154746 1540 CpG island CpG island 10941
Tlx1os 19 45154057 to 45159304 5247 - antisense lncRNA gene T cell leukemia, homeobox 1, opposite strand
Cpgi10942 19 45155791 to 45156280 489 CpG island CpG island 10942
Cpgi10943 19 45158978 to 45159428 450 CpG island CpG island 10943
Tssr159548 19 45159302 to 45159312 10 - TSS region transcription start site region 159548
Cpgi10944 19 45163188 to 45163339 151 CpG island CpG island 10944
Cpgi10945 19 45176939 to 45177111 172 CpG island CpG island 10945
Cpgi10946 19 45208265 to 45208502 237 CpG island CpG island 10946
Cpgi10947 19 45221272 to 45221533 261 CpG island CpG island 10947
Cpgi10948 19 45223824 to 45224403 579 CpG island CpG island 10948
Cpgi10949 19 45229179 to 45229738 559 CpG island CpG island 10949
Cpgi10950 19 45230106 to 45230479 373 CpG island CpG island 10950
Cpgi10951 19 45230930 to 45231883 953 CpG island CpG island 10951
Dp(19Lbx1-Fgf8)2Fsp 19 45232684 to 45742915 510231 chromosomal duplication duplication, Chr 19, Francois Spitz 2
Dp(19Lbx1-Fbxw4)3Fsp 19 45232684 to 45660312 427628 chromosomal duplication duplication, Chr 19, Francois Spitz 3
Lbx1 19 45232684 to 45235812 3128 - protein coding gene ladybird homeobox 1
Del(19Lbx1-Poll)6Fsp 19 45232684 to 45560531 327847 chromosomal deletion deletion, Chr 19, Francois Spitz 6
Cpgi10952 19 45233252 to 45234417 1165 CpG island CpG island 10952
Cpgi10953 19 45234649 to 45236931 2282 CpG island CpG island 10953
Tssr156682 19 45235605 to 45235610 5 + TSS region transcription start site region 156682
Tssr159549 19 45236827 to 45236872 45 - TSS region transcription start site region 159549