Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:44563762-44994512

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hif1an 19 44562854 to 44576274 13420 + protein coding gene hypoxia-inducible factor 1, alpha subunit inhibitor
Tssr156620 19 44565064 to 44565068 4 + TSS region transcription start site region 156620
D19Dcr86 19 44584925 to 44585024 99 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 86
Cpgi10899 19 44591026 to 44591206 180 CpG island CpG island 10899
Gm35460 19 44614758 to 44646816 32058 + lncRNA gene predicted gene, 35460
Cpgi10900 19 44639902 to 44640325 423 CpG island CpG island 10900
Cpgi10901 19 44669696 to 44669893 197 CpG island CpG island 10901
Cpgi10902 19 44670338 to 44671615 1277 CpG island CpG island 10902
Cpgi10903 19 44671854 to 44672446 592 CpG island CpG island 10903
Gm41854 19 44672417 to 44674865 2448 + lncRNA gene predicted gene, 41854
Cpgi10904 19 44674582 to 44675314 732 CpG island CpG island 10904
Cpgi10905 19 44683709 to 44684660 951 CpG island CpG island 10905
Gm26644 19 44692367 to 44695275 2908 - lincRNA gene predicted gene, 26644
Cpgi10906 19 44692529 to 44692990 461 CpG island CpG island 10906
Tssr159533 19 44695303 to 44695318 15 - TSS region transcription start site region 159533
Tssr159534 19 44695460 to 44695481 21 - TSS region transcription start site region 159534
Tssr159535 19 44696373 to 44696403 30 - TSS region transcription start site region 159535
Tssr159536 19 44696882 to 44696890 8 - TSS region transcription start site region 159536
Tssr159537 19 44696942 to 44696949 7 - TSS region transcription start site region 159537
Cpgi10907 19 44719977 to 44720709 732 CpG island CpG island 10907
Cpgi10908 19 44726031 to 44726473 442 CpG island CpG island 10908
Cpgi10909 19 44734150 to 44735206 1056 CpG island CpG island 10909
Gm35610 19 44740179 to 44742943 2764 + lncRNA gene predicted gene, 35610
Cpgi10910 19 44741187 to 44742289 1102 CpG island CpG island 10910
Cpgi10911 19 44746506 to 44747056 550 CpG island CpG island 10911
Tssr156621 19 44746591 to 44746622 31 + TSS region transcription start site region 156621
Tssr156622 19 44746659 to 44746671 12 + TSS region transcription start site region 156622
Tssr156623 19 44746689 to 44746700 11 + TSS region transcription start site region 156623
Tssr156624 19 44746702 to 44746712 10 + TSS region transcription start site region 156624
Tssr156625 19 44746718 to 44746727 9 + TSS region transcription start site region 156625
Tssr159538 19 44749617 to 44749621 4 - TSS region transcription start site region 159538
Cpgi10912 19 44750342 to 44750942 600 CpG island CpG island 10912
Tssr159539 19 44750758 to 44750765 7 - TSS region transcription start site region 159539
Tssr159540 19 44750801 to 44750809 8 - TSS region transcription start site region 159540
Cpgi10913 19 44755529 to 44757711 2182 CpG island CpG island 10913
Pax2 19 44756045 to 44837871 81826 + protein coding gene paired box 2
Tssr156626 19 44756697 to 44756714 17 + TSS region transcription start site region 156626
Tssr156627 19 44756900 to 44756924 24 + TSS region transcription start site region 156627
Tssr156628 19 44756930 to 44756942 12 + TSS region transcription start site region 156628
Cpgi10914 19 44758815 to 44761072 2257 CpG island CpG island 10914
Cpgi10915 19 44761582 to 44761872 290 CpG island CpG island 10915
Gm20395 19 44773762 to 44784512 10750 - antisense lncRNA gene predicted gene 20395
Mir6405 19 44808406 to 44808529 123 + miRNA gene microRNA 6405
Tssr156629 19 44825234 to 44825238 4 + TSS region transcription start site region 156629
1700039E22Rik 19 44828493 to 44835938 7445 - antisense lncRNA gene RIKEN cDNA 1700039E22 gene
Cpgi10916 19 44835333 to 44836932 1599 CpG island CpG island 10916
Tssr156630 19 44837341 to 44837345 4 + TSS region transcription start site region 156630
Gm5246 19 44851009 to 44851976 967 + pseudogene predicted gene 5246
D19Mit27 19 44852997 to 44853171 174 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 27
Cpgi10917 19 44867683 to 44867867 184 CpG island CpG island 10917
D19Mit24 19 44872204 to 44872359 155 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 24
Cpgi10918 19 44882073 to 44883060 987 CpG island CpG island 10918
Cpgi10919 19 44893525 to 44893834 309 CpG island CpG island 10919
Cpgi10920 19 44900324 to 44900735 411 CpG island CpG island 10920
Tssr5530 19 44918432 to 44918467 35 + TSS region transcription start site region 5530
Tssr156631 19 44918501 to 44918516 15 + TSS region transcription start site region 156631
Tssr156632 19 44918539 to 44918553 14 + TSS region transcription start site region 156632
Cpgi10921 19 44930750 to 44931661 911 CpG island CpG island 10921
Slf2 19 44931119 to 44983787 52668 + protein coding gene SMC5-SMC6 complex localization factor 2
Tssr156633 19 44931154 to 44931172 18 + TSS region transcription start site region 156633
Tssr156634 19 44935431 to 44935465 34 + TSS region transcription start site region 156634
Gm25482 19 44945022 to 44945128 106 + snRNA gene predicted gene, 25482
Tssr156635 19 44954742 to 44954746 4 + TSS region transcription start site region 156635
Tssr156636 19 44956996 to 44957000 4 + TSS region transcription start site region 156636
Tssr156637 19 44957395 to 44957399 4 + TSS region transcription start site region 156637
4930414N06Rik 19 44972117 to 44984550 12433 - lncRNA gene RIKEN cDNA 4930414N06 gene
Tssr159541 19 44984525 to 44984548 23 - TSS region transcription start site region 159541
Tssr156638 19 44988366 to 44988376 10 + TSS region transcription start site region 156638
Tssr156639 19 44988924 to 44988942 18 + TSS region transcription start site region 156639
Cpgi10922 19 44988937 to 44989808 871 CpG island CpG island 10922
Tssr156640 19 44989073 to 44989100 27 + TSS region transcription start site region 156640
Sema4g 19 44989101 to 45003397 14296 + protein coding gene sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G
Tssr156641 19 44989242 to 44989318 76 + TSS region transcription start site region 156641
Tssr156642 19 44989319 to 44989330 11 + TSS region transcription start site region 156642
Tssr156643 19 44990060 to 44990092 32 + TSS region transcription start site region 156643
Tssr156644 19 44992127 to 44992129 2 + TSS region transcription start site region 156644
Tssr156645 19 44992325 to 44992344 19 + TSS region transcription start site region 156645
Tssr156646 19 44992431 to 44992456 25 + TSS region transcription start site region 156646