Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4397781-4637811

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57 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Kdm2a 19 4316144 to 4398596 82452 - protein coding gene lysine (K)-specific demethylase 2A
Cpgi10399 19 4396445 to 4398710 2265 CpG island CpG island 10399
9430078G10Rik 19 4397713 to 4399820 2107 unclassified gene RIKEN cDNA 9430078G10 gene
Rhod 19 4425457 to 4439424 13967 - protein coding gene ras homolog family member D
Cpgi10400 19 4438907 to 4439883 976 CpG island CpG island 10400
A930001C03Rik 19 4439323 to 4448325 9002 + lncRNA gene RIKEN cDNA A930001C03 gene
Tssr157491 19 4439369 to 4439386 17 - TSS region transcription start site region 157491
Tssr157492 19 4439388 to 4439450 62 - TSS region transcription start site region 157492
Tssr154318 19 4439511 to 4439539 28 + TSS region transcription start site region 154318
Tssr157493 19 4440398 to 4440409 11 - TSS region transcription start site region 157493
Tssr157494 19 4440447 to 4440458 11 - TSS region transcription start site region 157494
Syt12 19 4445908 to 4477143 31235 - protein coding gene synaptotagmin XII
Cpgi10401 19 4476248 to 4477511 1263 CpG island CpG island 10401
Tssr157495 19 4477119 to 4477161 42 - TSS region transcription start site region 157495
Tssr157496 19 4477567 to 4477592 25 - TSS region transcription start site region 157496
2010003K11Rik 19 4496790 to 4498583 1793 - protein coding gene RIKEN cDNA 2010003K11 gene
Tssr157497 19 4498399 to 4498410 11 - TSS region transcription start site region 157497
Tssr157498 19 4498532 to 4498543 11 - TSS region transcription start site region 157498
Tssr157499 19 4498547 to 4498572 25 - TSS region transcription start site region 157499
Tssr157500 19 4498574 to 4498596 22 - TSS region transcription start site region 157500
Tssr157501 19 4498603 to 4498614 11 - TSS region transcription start site region 157501
Cpgi10402 19 4509839 to 4511261 1422 CpG island CpG island 10402
Pcx 19 4510472 to 4621752 111280 + protein coding gene pyruvate carboxylase
Tssr154319 19 4510480 to 4510487 7 + TSS region transcription start site region 154319
Tssr154320 19 4510498 to 4510508 10 + TSS region transcription start site region 154320
Tssr154321 19 4510510 to 4510532 22 + TSS region transcription start site region 154321
Tssr154322 19 4510536 to 4510552 16 + TSS region transcription start site region 154322
Tssr154323 19 4517781 to 4517811 30 + TSS region transcription start site region 154323
Tssr154324 19 4558007 to 4558011 4 + TSS region transcription start site region 154324
Tssr154325 19 4558808 to 4558816 8 + TSS region transcription start site region 154325
Tssr154326 19 4594312 to 4594332 20 + TSS region transcription start site region 154326
Tssr154327 19 4594337 to 4594361 24 + TSS region transcription start site region 154327
Tssr154328 19 4594363 to 4594394 31 + TSS region transcription start site region 154328
Tssr154329 19 4594398 to 4594422 24 + TSS region transcription start site region 154329
Tssr5407 19 4601665 to 4601681 16 + TSS region transcription start site region 5407
Tssr154330 19 4603074 to 4603079 5 + TSS region transcription start site region 154330
Tssr154331 19 4603090 to 4603102 12 + TSS region transcription start site region 154331
Tssr154332 19 4603126 to 4603145 19 + TSS region transcription start site region 154332
Tssr154333 19 4604533 to 4604541 8 + TSS region transcription start site region 154333
Tssr154334 19 4609920 to 4609940 20 + TSS region transcription start site region 154334
Lrfn4 19 4611785 to 4615667 3882 - protein coding gene leucine rich repeat and fibronectin type III domain containing 4
Cpgi10403 19 4614279 to 4616070 1791 CpG island CpG island 10403
Tssr157502 19 4615145 to 4615199 54 - TSS region transcription start site region 157502
Tssr157503 19 4615453 to 4615512 59 - TSS region transcription start site region 157503
Tssr157504 19 4615518 to 4615539 21 - TSS region transcription start site region 157504
Tssr157505 19 4615647 to 4615700 53 - TSS region transcription start site region 157505
Tssr154335 19 4618432 to 4618449 17 + TSS region transcription start site region 154335
Tssr154336 19 4621135 to 4621148 13 + TSS region transcription start site region 154336
Rce1 19 4622591 to 4625641 3050 - protein coding gene Ras converting CAAX endopeptidase 1
Mir6986 19 4623898 to 4623955 57 - miRNA gene microRNA 6986
Cpgi10404 19 4625016 to 4626186 1170 CpG island CpG island 10404
Tssr157506 19 4625084 to 4625123 39 - TSS region transcription start site region 157506
Tssr157507 19 4625272 to 4625321 49 - TSS region transcription start site region 157507
Tssr157508 19 4625323 to 4625361 38 - TSS region transcription start site region 157508
9030625N01Rik 19 4625394 to 4629856 4462 unclassified non-coding RNA gene RIKEN cDNA 9030625N01 gene
Tssr157509 19 4625612 to 4625658 46 - TSS region transcription start site region 157509
Gm960 19 4625734 to 4698668 72934 - protein coding gene predicted gene 960