Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:42765283-44235292

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198 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hps1 19 42755191 to 42779996 24805 - protein coding gene HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
Tssr159366 19 42767488 to 42767498 10 - TSS region transcription start site region 159366
Gm16244 19 42779032 to 42781454 2422 + lncRNA gene predicted gene 16244
Cpgi10857 19 42779605 to 42780317 712 CpG island CpG island 10857
Tssr159367 19 42779936 to 42779985 49 - TSS region transcription start site region 159367
Hpse2 19 42788947 to 43388311 599364 - protein coding gene heparanase 2
Cpgi10858 19 42795099 to 42795644 545 CpG island CpG island 10858
D19Dcr32 19 42975388 to 42975491 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 32
Tssr156506 19 43034945 to 43034956 11 + TSS region transcription start site region 156506
Tssr159368 19 43112411 to 43112412 1 - TSS region transcription start site region 159368
Gm22135 19 43160795 to 43160902 107 - rRNA gene predicted gene, 22135
Tssr159369 19 43248057 to 43248061 4 - TSS region transcription start site region 159369
Gm18379 19 43278429 to 43279303 874 - pseudogene predicted gene, 18379
Tssr156507 19 43280774 to 43280789 15 + TSS region transcription start site region 156507
Gm6776 19 43280798 to 43281697 899 + pseudogene predicted pseudogene 6776
Tssr156508 19 43281223 to 43281245 22 + TSS region transcription start site region 156508
Cpgi10859 19 43384762 to 43385653 891 CpG island CpG island 10859
Cpgi10860 19 43386188 to 43386882 694 CpG island CpG island 10860
8430434A19Rik 19 43386282 to 43387403 1121 unclassified gene RIKEN cDNA 8430434A19 gene
Tssr159370 19 43388197 to 43388224 27 - TSS region transcription start site region 159370
Tssr159371 19 43388292 to 43388305 13 - TSS region transcription start site region 159371
Tssr159372 19 43388338 to 43388349 11 - TSS region transcription start site region 159372
Tssr159373 19 43388355 to 43388369 14 - TSS region transcription start site region 159373
Tssr159374 19 43420665 to 43420692 27 - TSS region transcription start site region 159374
Gm38568 19 43424826 to 43427960 3134 + lncRNA gene predicted gene, 38568
Cpgi10861 19 43427352 to 43427739 387 CpG island CpG island 10861
Gm47936 19 43434610 to 43440460 5850 - antisense lncRNA gene predicted gene, 47936
Cpgi10862 19 43440075 to 43441978 1903 CpG island CpG island 10862
Tssr156509 19 43440404 to 43440447 43 + TSS region transcription start site region 156509
Cnnm1 19 43440436 to 43497210 56774 + protein coding gene cyclin M1
Gm47938 19 43457444 to 43469758 12314 - antisense lncRNA gene predicted gene, 47938
Tssr156510 19 43468380 to 43468383 3 + TSS region transcription start site region 156510
Tssr156511 19 43490103 to 43490107 4 + TSS region transcription start site region 156511
Got1 19 43499752 to 43524605 24853 - protein coding gene glutamic-oxaloacetic transaminase 1, soluble
Tssr159375 19 43500283 to 43500292 9 - TSS region transcription start site region 159375
Tssr159376 19 43500479 to 43500490 11 - TSS region transcription start site region 159376
Tssr159377 19 43502953 to 43502969 16 - TSS region transcription start site region 159377
Tssr159378 19 43504584 to 43504595 11 - TSS region transcription start site region 159378
Tssr159379 19 43506999 to 43507029 30 - TSS region transcription start site region 159379
Tssr159380 19 43510206 to 43510218 12 - TSS region transcription start site region 159380
Tssr159381 19 43511629 to 43511677 48 - TSS region transcription start site region 159381
Tssr159382 19 43521359 to 43521364 5 - TSS region transcription start site region 159382
Tssr156512 19 43523719 to 43523730 11 + TSS region transcription start site region 156512
Cpgi10863 19 43524196 to 43525276 1080 CpG island CpG island 10863
Tssr159383 19 43524369 to 43524373 4 - TSS region transcription start site region 159383
Tssr159384 19 43524462 to 43524580 118 - TSS region transcription start site region 159384
Tssr159385 19 43524756 to 43524761 5 - TSS region transcription start site region 159385
Tssr156513 19 43528325 to 43528332 7 + TSS region transcription start site region 156513
Tssr156514 19 43528340 to 43528351 11 + TSS region transcription start site region 156514
Tssr156515 19 43528360 to 43528373 13 + TSS region transcription start site region 156515
Gm19179 19 43544183 to 43544959 776 + pseudogene predicted gene, 19179
Gm34636 19 43545927 to 43568993 23066 - lncRNA gene predicted gene, 34636
Cpgi10864 19 43570997 to 43571451 454 CpG island CpG island 10864
Cpgi10865 19 43583604 to 43583812 208 CpG island CpG island 10865
Cpgi10866 19 43599688 to 43600108 420 CpG island CpG island 10866
Cpgi10867 19 43601000 to 43601869 869 CpG island CpG island 10867
Cpgi10868 19 43606687 to 43607255 568 CpG island CpG island 10868
Gm20467 19 43609077 to 43610625 1548 - lincRNA gene predicted gene 20467
Cpgi10869 19 43610246 to 43610904 658 CpG island CpG island 10869
Gm46656 19 43610832 to 43611890 1058 - lncRNA gene predicted gene, 46656
Cpgi10870 19 43612018 to 43612945 927 CpG island CpG island 10870
Tssr156516 19 43612299 to 43612321 22 + TSS region transcription start site region 156516
Nkx2-3 19 43612325 to 43615892 3567 + protein coding gene NK2 homeobox 3
Tssr156517 19 43612392 to 43612416 24 + TSS region transcription start site region 156517
Cpgi10871 19 43613954 to 43615399 1445 CpG island CpG island 10871
Cpgi10872 19 43615918 to 43616920 1002 CpG island CpG island 10872
Cpgi10873 19 43617045 to 43617197 152 CpG island CpG island 10873
Cpgi10874 19 43619977 to 43620370 393 CpG island CpG island 10874
Gm22646 19 43622446 to 43622560 114 + miRNA gene predicted gene, 22646
Gm4311 19 43637372 to 43642404 5032 - unclassified gene predicted gene 4311
Gm34922 19 43645554 to 43655630 10076 + lncRNA gene predicted gene, 34922
Tssr156518 19 43647480 to 43647485 5 + TSS region transcription start site region 156518
Slc25a28 19 43663822 to 43674881 11059 - protein coding gene solute carrier family 25, member 28
Cpgi10875 19 43674109 to 43676161 2052 CpG island CpG island 10875
Tssr159386 19 43674844 to 43674909 65 - TSS region transcription start site region 159386
Tssr156519 19 43675173 to 43675192 19 + TSS region transcription start site region 156519
BC037704 19 43675178 to 43677170 1992 + lncRNA gene cDNA sequence BC037704
Tssr156520 19 43675460 to 43675482 22 + TSS region transcription start site region 156520
Cpgi10876 19 43689388 to 43690276 888 CpG island CpG island 10876
Tssr156521 19 43689647 to 43689658 11 + TSS region transcription start site region 156521
Tssr156522 19 43689672 to 43689695 23 + TSS region transcription start site region 156522
Entpd7 19 43689672 to 43733697 44025 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 7
Tssr156523 19 43689798 to 43689868 70 + TSS region transcription start site region 156523
Tssr156524 19 43711417 to 43711460 43 + TSS region transcription start site region 156524
Tssr159387 19 43717635 to 43717641 6 - TSS region transcription start site region 159387
Cpgi10877 19 43729715 to 43730028 313 CpG island CpG island 10877
Tssr156525 19 43731171 to 43731175 4 + TSS region transcription start site region 156525
Tssr156526 19 43731441 to 43731461 20 + TSS region transcription start site region 156526
Tssr156527 19 43731778 to 43731799 21 + TSS region transcription start site region 156527
Tssr156528 19 43731997 to 43732001 4 + TSS region transcription start site region 156528
Tssr156529 19 43732260 to 43732264 4 + TSS region transcription start site region 156529
Cox15 19 43733254 to 43753000 19746 - protein coding gene cytochrome c oxidase assembly protein 15
Tssr159388 19 43735941 to 43735944 3 - TSS region transcription start site region 159388
Tssr159389 19 43740535 to 43740539 4 - TSS region transcription start site region 159389
Tssr159390 19 43751662 to 43751681 19 - TSS region transcription start site region 159390
Tssr159391 19 43751706 to 43751708 2 - TSS region transcription start site region 159391
Cpgi10878 19 43752655 to 43753570 915 CpG island CpG island 10878
Tssr159392 19 43752891 to 43752902 11 - TSS region transcription start site region 159392
Tssr159393 19 43752924 to 43753001 77 - TSS region transcription start site region 159393
Tssr156530 19 43752992 to 43753064 72 + TSS region transcription start site region 156530
Cutc 19 43753023 to 43768638 15615 + protein coding gene cutC copper transporter
Tssr156531 19 43753074 to 43753110 36 + TSS region transcription start site region 156531
Tssr156532 19 43753112 to 43753131 19 + TSS region transcription start site region 156532
Tssr156533 19 43782181 to 43782193 12 + TSS region transcription start site region 156533
Tssr156534 19 43782297 to 43782313 16 + TSS region transcription start site region 156534
Abcc2 19 43782308 to 43838332 56024 + protein coding gene ATP-binding cassette, sub-family C (CFTR/MRP), member 2
Tssr156535 19 43782320 to 43782334 14 + TSS region transcription start site region 156535
Tssr156536 19 43782339 to 43782350 11 + TSS region transcription start site region 156536
Tssr156537 19 43782617 to 43782625 8 + TSS region transcription start site region 156537
Tssr156538 19 43783041 to 43783051 10 + TSS region transcription start site region 156538
Tssr156539 19 43786950 to 43786964 14 + TSS region transcription start site region 156539
Tssr156540 19 43786971 to 43786981 10 + TSS region transcription start site region 156540
Tssr156541 19 43787138 to 43787177 39 + TSS region transcription start site region 156541
Tssr156542 19 43788105 to 43788116 11 + TSS region transcription start site region 156542
Tssr156543 19 43788397 to 43788427 30 + TSS region transcription start site region 156543
Tssr156544 19 43792383 to 43792398 15 + TSS region transcription start site region 156544
Tssr156545 19 43794451 to 43794455 4 + TSS region transcription start site region 156545
Tssr156546 19 43808764 to 43808779 15 + TSS region transcription start site region 156546
Gm10768 19 43838803 to 43840845 2042 + lncRNA gene predicted gene 10768
Tssr156547 19 43839264 to 43839275 11 + TSS region transcription start site region 156547
Tssr156548 19 43840030 to 43840039 9 + TSS region transcription start site region 156548
Dnmbp 19 43846821 to 43940191 93370 - protein coding gene dynamin binding protein
Gm24400 19 43857245 to 43857351 106 - snRNA gene predicted gene, 24400
Cpgi10879 19 43879424 to 43879943 519 CpG island CpG island 10879
Tssr159394 19 43879711 to 43879729 18 - TSS region transcription start site region 159394
Tssr159395 19 43879772 to 43879802 30 - TSS region transcription start site region 159395
Tssr159396 19 43890555 to 43890566 11 - TSS region transcription start site region 159396
Tssr159397 19 43890575 to 43890586 11 - TSS region transcription start site region 159397
Tssr159398 19 43890592 to 43890610 18 - TSS region transcription start site region 159398
Tssr156549 19 43921066 to 43921077 11 + TSS region transcription start site region 156549
Tssr159399 19 43921410 to 43921419 9 - TSS region transcription start site region 159399
n-R5s21 19 43932316 to 43932432 116 + rRNA gene nuclear encoded rRNA 5S 21
Cpgi10880 19 43939547 to 43940788 1241 CpG island CpG island 10880
Tssr156550 19 43939756 to 43939759 3 + TSS region transcription start site region 156550
1700084K02Rik 19 43939793 to 43940919 1126 unclassified gene RIKEN cDNA 1700084K02 gene
Tssr159400 19 43940146 to 43940165 19 - TSS region transcription start site region 159400
Tssr159401 19 43940168 to 43940199 31 - TSS region transcription start site region 159401
Tssr159402 19 43940203 to 43940232 29 - TSS region transcription start site region 159402
D19Dcr33 19 43947972 to 43948070 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 33
Cpn1 19 43956307 to 43986551 30244 - protein coding gene carboxypeptidase N, polypeptide 1
Tssr159403 19 43968491 to 43968509 18 - TSS region transcription start site region 159403
Tssr159404 19 43968543 to 43968563 20 - TSS region transcription start site region 159404
Tssr159405 19 43968669 to 43968698 29 - TSS region transcription start site region 159405
Cpgi10881 19 43980762 to 43981022 260 CpG island CpG island 10881
Tssr159406 19 43980852 to 43980863 11 - TSS region transcription start site region 159406
Cpgi10882 19 43986006 to 43986326 320 CpG island CpG island 10882
Tssr159407 19 43986106 to 43986120 14 - TSS region transcription start site region 159407
Tssr159408 19 43986124 to 43986133 9 - TSS region transcription start site region 159408
Tssr159409 19 43986135 to 43986223 88 - TSS region transcription start site region 159409
Tssr159410 19 43986348 to 43986359 11 - TSS region transcription start site region 159410
Tssr159411 19 43986366 to 43986377 11 - TSS region transcription start site region 159411
Tssr159412 19 43986401 to 43986412 11 - TSS region transcription start site region 159412
Tssr159413 19 43986479 to 43986491 12 - TSS region transcription start site region 159413
Tssr159414 19 43986495 to 43986527 32 - TSS region transcription start site region 159414
Tssr159415 19 43986533 to 43986544 11 - TSS region transcription start site region 159415
Tssr159416 19 43986552 to 43986561 9 - TSS region transcription start site region 159416
Cyp2c23 19 44005022 to 44029208 24186 - protein coding gene cytochrome P450, family 2, subfamily c, polypeptide 23
Tssr159417 19 44005228 to 44005229 1 - TSS region transcription start site region 159417
Tssr159418 19 44005476 to 44005499 23 - TSS region transcription start site region 159418
Tssr159419 19 44005565 to 44005613 48 - TSS region transcription start site region 159419
Tssr159420 19 44012427 to 44012442 15 - TSS region transcription start site region 159420
Tssr159421 19 44013656 to 44013667 11 - TSS region transcription start site region 159421
Tssr159422 19 44013845 to 44013854 9 - TSS region transcription start site region 159422
Tssr159423 19 44021619 to 44021636 17 - TSS region transcription start site region 159423
Tssr159424 19 44021654 to 44021697 43 - TSS region transcription start site region 159424
Tssr159425 19 44021731 to 44021762 31 - TSS region transcription start site region 159425
Tssr159426 19 44021763 to 44021775 12 - TSS region transcription start site region 159426
D19Mit112 19 44022415 to 44022525 110 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 112
Tssr159427 19 44029088 to 44029098 10 - TSS region transcription start site region 159427
Tssr159428 19 44029201 to 44029214 13 - TSS region transcription start site region 159428
Erlin1 19 44034944 to 44069785 34841 - protein coding gene ER lipid raft associated 1
Gm18230 19 44052234 to 44052736 502 - pseudogene predicted gene, 18230
Tssr5522 19 44057209 to 44057220 11 - TSS region transcription start site region 5522
Cpgi10883 19 44069027 to 44070174 1147 CpG island CpG island 10883
Tssr159429 19 44069360 to 44069422 62 - TSS region transcription start site region 159429
Tssr159430 19 44069646 to 44069675 29 - TSS region transcription start site region 159430
Tssr159431 19 44069690 to 44069708 18 - TSS region transcription start site region 159431
Tssr159432 19 44069736 to 44069787 51 - TSS region transcription start site region 159432
Chuk 19 44073335 to 44107480 34145 - protein coding gene conserved helix-loop-helix ubiquitous kinase
Cpgi10884 19 44106876 to 44107632 756 CpG island CpG island 10884
Tssr159433 19 44107426 to 44107441 15 - TSS region transcription start site region 159433
Tssr159434 19 44107447 to 44107492 45 - TSS region transcription start site region 159434
Tssr156551 19 44107521 to 44107588 67 + TSS region transcription start site region 156551
Cwf19l1 19 44108644 to 44135876 27232 - protein coding gene CWF19-like 1, cell cycle control (S. pombe)
Gm24336 19 44113979 to 44114124 145 - snoRNA gene predicted gene, 24336
Cpgi10885 19 44135223 to 44135950 727 CpG island CpG island 10885
Tssr159435 19 44135816 to 44135881 65 - TSS region transcription start site region 159435
Bloc1s2 19 44139266 to 44146446 7180 - protein coding gene biogenesis of lysosomal organelles complex-1, subunit 2
Cpgi10886 19 44146050 to 44146655 605 CpG island CpG island 10886
Tssr159436 19 44146433 to 44146447 14 - TSS region transcription start site region 159436
Pkd2l1 19 44147637 to 44192442 44805 - protein coding gene polycystic kidney disease 2-like 1
Tssr156552 19 44203213 to 44203229 16 + TSS region transcription start site region 156552
D19Dcr85 19 44203215 to 44203311 96 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 85
Tssr156553 19 44203265 to 44203284 19 + TSS region transcription start site region 156553
Scd3 19 44203288 to 44244016 40728 + protein coding gene stearoyl-coenzyme A desaturase 3
Tssr159437 19 44215550 to 44215566 16 - TSS region transcription start site region 159437
Tssr156554 19 44229629 to 44229632 3 + TSS region transcription start site region 156554
Tssr159438 19 44231664 to 44231697 33 - TSS region transcription start site region 159438