Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:42607411-43617412

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Loxl4 19 42593982 to 42612813 18831 - protein coding gene lysyl oxidase-like 4
Cpgi10854 19 42612544 to 42613316 772 CpG island CpG island 10854
Tssr159363 19 42612766 to 42612781 15 - TSS region transcription start site region 159363
Cpgi10855 19 42699211 to 42699615 404 CpG island CpG island 10855
Gm25216 19 42699777 to 42699902 125 - snoRNA gene predicted gene, 25216
Pyroxd2 19 42725858 to 42752775 26917 - protein coding gene pyridine nucleotide-disulphide oxidoreductase domain 2
Gm19437 19 42745691 to 42752329 6638 + lncRNA gene predicted gene, 19437
Tssr156505 19 42745804 to 42745815 11 + TSS region transcription start site region 156505
Cpgi10856 19 42752214 to 42752498 284 CpG island CpG island 10856
Tssr159364 19 42752459 to 42752517 58 - TSS region transcription start site region 159364
Tssr159365 19 42752710 to 42752721 11 - TSS region transcription start site region 159365
Hps1 19 42755191 to 42779996 24805 - protein coding gene HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
Tssr159366 19 42767488 to 42767498 10 - TSS region transcription start site region 159366
Gm16244 19 42779032 to 42781454 2422 + lncRNA gene predicted gene 16244
Cpgi10857 19 42779605 to 42780317 712 CpG island CpG island 10857
Tssr159367 19 42779936 to 42779985 49 - TSS region transcription start site region 159367
Hpse2 19 42788947 to 43388311 599364 - protein coding gene heparanase 2
Cpgi10858 19 42795099 to 42795644 545 CpG island CpG island 10858
D19Dcr32 19 42975388 to 42975491 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 32
Tssr156506 19 43034945 to 43034956 11 + TSS region transcription start site region 156506
Tssr159368 19 43112411 to 43112412 1 - TSS region transcription start site region 159368
Gm22135 19 43160795 to 43160902 107 - rRNA gene predicted gene, 22135
Tssr159369 19 43248057 to 43248061 4 - TSS region transcription start site region 159369
Gm18379 19 43278429 to 43279303 874 - pseudogene predicted gene, 18379
Tssr156507 19 43280774 to 43280789 15 + TSS region transcription start site region 156507
Gm6776 19 43280798 to 43281697 899 + pseudogene predicted pseudogene 6776
Tssr156508 19 43281223 to 43281245 22 + TSS region transcription start site region 156508
Cpgi10859 19 43384762 to 43385653 891 CpG island CpG island 10859
Cpgi10860 19 43386188 to 43386882 694 CpG island CpG island 10860
8430434A19Rik 19 43386282 to 43387403 1121 unclassified gene RIKEN cDNA 8430434A19 gene
Tssr159370 19 43388197 to 43388224 27 - TSS region transcription start site region 159370
Tssr159371 19 43388292 to 43388305 13 - TSS region transcription start site region 159371
Tssr159372 19 43388338 to 43388349 11 - TSS region transcription start site region 159372
Tssr159373 19 43388355 to 43388369 14 - TSS region transcription start site region 159373
Tssr159374 19 43420665 to 43420692 27 - TSS region transcription start site region 159374
Gm38568 19 43424826 to 43427960 3134 + lncRNA gene predicted gene, 38568
Cpgi10861 19 43427352 to 43427739 387 CpG island CpG island 10861
Gm47936 19 43434610 to 43440460 5850 - antisense lncRNA gene predicted gene, 47936
Cpgi10862 19 43440075 to 43441978 1903 CpG island CpG island 10862
Tssr156509 19 43440404 to 43440447 43 + TSS region transcription start site region 156509
Cnnm1 19 43440436 to 43497210 56774 + protein coding gene cyclin M1
Gm47938 19 43457444 to 43469758 12314 - antisense lncRNA gene predicted gene, 47938
Tssr156510 19 43468380 to 43468383 3 + TSS region transcription start site region 156510
Tssr156511 19 43490103 to 43490107 4 + TSS region transcription start site region 156511
Got1 19 43499752 to 43524605 24853 - protein coding gene glutamic-oxaloacetic transaminase 1, soluble
Tssr159375 19 43500283 to 43500292 9 - TSS region transcription start site region 159375
Tssr159376 19 43500479 to 43500490 11 - TSS region transcription start site region 159376
Tssr159377 19 43502953 to 43502969 16 - TSS region transcription start site region 159377
Tssr159378 19 43504584 to 43504595 11 - TSS region transcription start site region 159378
Tssr159379 19 43506999 to 43507029 30 - TSS region transcription start site region 159379
Tssr159380 19 43510206 to 43510218 12 - TSS region transcription start site region 159380
Tssr159381 19 43511629 to 43511677 48 - TSS region transcription start site region 159381
Tssr159382 19 43521359 to 43521364 5 - TSS region transcription start site region 159382
Tssr156512 19 43523719 to 43523730 11 + TSS region transcription start site region 156512
Cpgi10863 19 43524196 to 43525276 1080 CpG island CpG island 10863
Tssr159383 19 43524369 to 43524373 4 - TSS region transcription start site region 159383
Tssr159384 19 43524462 to 43524580 118 - TSS region transcription start site region 159384
Tssr159385 19 43524756 to 43524761 5 - TSS region transcription start site region 159385
Tssr156513 19 43528325 to 43528332 7 + TSS region transcription start site region 156513
Tssr156514 19 43528340 to 43528351 11 + TSS region transcription start site region 156514
Tssr156515 19 43528360 to 43528373 13 + TSS region transcription start site region 156515
Gm19179 19 43544183 to 43544959 776 + pseudogene predicted gene, 19179
Gm34636 19 43545927 to 43568993 23066 - lncRNA gene predicted gene, 34636
Cpgi10864 19 43570997 to 43571451 454 CpG island CpG island 10864
Cpgi10865 19 43583604 to 43583812 208 CpG island CpG island 10865
Cpgi10866 19 43599688 to 43600108 420 CpG island CpG island 10866
Cpgi10867 19 43601000 to 43601869 869 CpG island CpG island 10867
Cpgi10868 19 43606687 to 43607255 568 CpG island CpG island 10868
Gm20467 19 43609077 to 43610625 1548 - lincRNA gene predicted gene 20467
Cpgi10869 19 43610246 to 43610904 658 CpG island CpG island 10869
Gm46656 19 43610832 to 43611890 1058 - lncRNA gene predicted gene, 46656
Cpgi10870 19 43612018 to 43612945 927 CpG island CpG island 10870
Tssr156516 19 43612299 to 43612321 22 + TSS region transcription start site region 156516
Nkx2-3 19 43612325 to 43615892 3567 + protein coding gene NK2 homeobox 3
Tssr156517 19 43612392 to 43612416 24 + TSS region transcription start site region 156517
Cpgi10871 19 43613954 to 43615399 1445 CpG island CpG island 10871
Cpgi10872 19 43615918 to 43616920 1002 CpG island CpG island 10872
Cpgi10873 19 43617045 to 43617197 152 CpG island CpG island 10873