Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:42070567-42294593

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62 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Hoga1 19 42045851 to 42070939 25088 + protein coding gene 4-hydroxy-2-oxoglutarate aldolase 1
Morn4 19 42074939 to 42086370 11431 - protein coding gene MORN repeat containing 4
Tssr159339 19 42075464 to 42075493 29 - TSS region transcription start site region 159339
Cpgi10842 19 42086071 to 42086465 394 CpG island CpG island 10842
Tssr159340 19 42086268 to 42086279 11 - TSS region transcription start site region 159340
Tssr159341 19 42086280 to 42086294 14 - TSS region transcription start site region 159341
Tssr159342 19 42086319 to 42086334 15 - TSS region transcription start site region 159342
Tssr159343 19 42086338 to 42086375 37 - TSS region transcription start site region 159343
Tssr159344 19 42089281 to 42089293 12 - TSS region transcription start site region 159344
Cpgi10843 19 42090037 to 42091151 1114 CpG island CpG island 10843
Tssr156478 19 42090422 to 42090502 80 + TSS region transcription start site region 156478
Pi4k2a 19 42090435 to 42122218 31783 + protein coding gene phosphatidylinositol 4-kinase type 2 alpha
Tssr156479 19 42090516 to 42090532 16 + TSS region transcription start site region 156479
Tssr159345 19 42091364 to 42091366 2 - TSS region transcription start site region 159345
Tssr156480 19 42091544 to 42091557 13 + TSS region transcription start site region 156480
Tssr156481 19 42106161 to 42106180 19 + TSS region transcription start site region 156481
Tssr156482 19 42117560 to 42117564 4 + TSS region transcription start site region 156482
Tssr156483 19 42120229 to 42120267 38 + TSS region transcription start site region 156483
Avpi1 19 42123275 to 42128993 5718 - protein coding gene arginine vasopressin-induced 1
Cpgi10844 19 42128365 to 42129477 1112 CpG island CpG island 10844
Tssr159346 19 42128911 to 42128941 30 - TSS region transcription start site region 159346
Tssr159347 19 42128946 to 42128967 21 - TSS region transcription start site region 159347
Tssr159348 19 42128969 to 42128980 11 - TSS region transcription start site region 159348
Tssr159349 19 42128982 to 42129041 59 - TSS region transcription start site region 159349
Tssr159350 19 42129043 to 42129069 26 - TSS region transcription start site region 159350
Tssr159351 19 42135972 to 42136008 36 - TSS region transcription start site region 159351
Tssr159352 19 42142150 to 42142156 6 - TSS region transcription start site region 159352
Cpgi10845 19 42146975 to 42148694 1719 CpG island CpG island 10845
Tssr156484 19 42147373 to 42147388 15 + TSS region transcription start site region 156484
Marveld1 19 42147400 to 42151703 4303 + protein coding gene MARVEL (membrane-associating) domain containing 1
Tssr156485 19 42147413 to 42147426 13 + TSS region transcription start site region 156485
Tssr156486 19 42147432 to 42147454 22 + TSS region transcription start site region 156486
Tssr5518 19 42147466 to 42147471 5 + TSS region transcription start site region 5518
Tssr156487 19 42159628 to 42159635 7 + TSS region transcription start site region 156487
Gm6937 19 42159631 to 42160768 1137 + pseudogene predicted pseudogene 6937
Cpgi10846 19 42170257 to 42171069 812 CpG island CpG island 10846
Tssr156488 19 42170562 to 42170600 38 + TSS region transcription start site region 156488
Zfyve27 19 42170567 to 42194593 24026 + protein coding gene zinc finger, FYVE domain containing 27
Tssr156489 19 42170604 to 42170631 27 + TSS region transcription start site region 156489
Tssr5519 19 42177183 to 42177206 23 + TSS region transcription start site region 5519
Sfrp5 19 42197971 to 42202252 4281 - protein coding gene secreted frizzled-related sequence protein 5
Cpgi10847 19 42201173 to 42202428 1255 CpG island CpG island 10847
Tssr5520 19 42202105 to 42202110 5 - TSS region transcription start site region 5520
Tssr159353 19 42202116 to 42202130 14 - TSS region transcription start site region 159353
Tssr159354 19 42202131 to 42202140 9 - TSS region transcription start site region 159354
Tssr159355 19 42202150 to 42202164 14 - TSS region transcription start site region 159355
D19Mit90 19 42221252 to 42221372 120 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 90
Tssr156490 19 42238613 to 42238624 11 + TSS region transcription start site region 156490
Tssr156491 19 42247544 to 42247586 42 + TSS region transcription start site region 156491
Golga7b 19 42247578 to 42270348 22770 + protein coding gene golgi autoantigen, golgin subfamily a, 7B
Tssr156492 19 42255241 to 42255245 4 + TSS region transcription start site region 156492
Cpgi10848 19 42255449 to 42256420 971 CpG island CpG island 10848
Tssr156493 19 42255704 to 42255761 57 + TSS region transcription start site region 156493
Tssr156494 19 42255814 to 42255867 53 + TSS region transcription start site region 156494
Tssr156495 19 42255872 to 42255889 17 + TSS region transcription start site region 156495
Tssr156496 19 42255890 to 42255903 13 + TSS region transcription start site region 156496
Cpgi10849 19 42268265 to 42268654 389 CpG island CpG island 10849
Tssr156497 19 42268688 to 42268692 4 + TSS region transcription start site region 156497
Gm26339 19 42274964 to 42275062 98 + miRNA gene predicted gene, 26339
Gm34347 19 42276887 to 42314626 37739 + lncRNA gene predicted gene, 34347
Mir3085 19 42280082 to 42280170 88 - miRNA gene microRNA 3085
Crtac1 19 42283037 to 42431783 148746 - protein coding gene cartilage acidic protein 1