Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:42052972-45843070

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794 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tlsr8 19 25158638 to 42400477 17241839 QTL thymic lymphoma suppressor region 8
Hoga1 19 42045851 to 42070939 25088 + protein coding gene 4-hydroxy-2-oxoglutarate aldolase 1
4933411K16Rik 19 42052248 to 42053627 1379 + protein coding gene RIKEN cDNA 4933411K16 gene
Tssr156474 19 42052985 to 42052996 11 + TSS region transcription start site region 156474
Tssr156475 19 42053040 to 42053049 9 + TSS region transcription start site region 156475
Tssr159336 19 42053069 to 42053077 8 - TSS region transcription start site region 159336
Tssr159337 19 42053086 to 42053089 3 - TSS region transcription start site region 159337
Tssr156476 19 42058006 to 42058008 2 + TSS region transcription start site region 156476
Tssr159338 19 42059452 to 42059461 9 - TSS region transcription start site region 159338
Cpgi10841 19 42059808 to 42059986 178 CpG island CpG island 10841
Tssr156477 19 42068696 to 42068729 33 + TSS region transcription start site region 156477
Morn4 19 42074939 to 42086370 11431 - protein coding gene MORN repeat containing 4
Tssr159339 19 42075464 to 42075493 29 - TSS region transcription start site region 159339
Cpgi10842 19 42086071 to 42086465 394 CpG island CpG island 10842
Tssr159340 19 42086268 to 42086279 11 - TSS region transcription start site region 159340
Tssr159341 19 42086280 to 42086294 14 - TSS region transcription start site region 159341
Tssr159342 19 42086319 to 42086334 15 - TSS region transcription start site region 159342
Tssr159343 19 42086338 to 42086375 37 - TSS region transcription start site region 159343
Tssr159344 19 42089281 to 42089293 12 - TSS region transcription start site region 159344
Cpgi10843 19 42090037 to 42091151 1114 CpG island CpG island 10843
Tssr156478 19 42090422 to 42090502 80 + TSS region transcription start site region 156478
Pi4k2a 19 42090435 to 42122218 31783 + protein coding gene phosphatidylinositol 4-kinase type 2 alpha
Tssr156479 19 42090516 to 42090532 16 + TSS region transcription start site region 156479
Tssr159345 19 42091364 to 42091366 2 - TSS region transcription start site region 159345
Tssr156480 19 42091544 to 42091557 13 + TSS region transcription start site region 156480
Tssr156481 19 42106161 to 42106180 19 + TSS region transcription start site region 156481
Tssr156482 19 42117560 to 42117564 4 + TSS region transcription start site region 156482
Tssr156483 19 42120229 to 42120267 38 + TSS region transcription start site region 156483
Avpi1 19 42123275 to 42128993 5718 - protein coding gene arginine vasopressin-induced 1
Cpgi10844 19 42128365 to 42129477 1112 CpG island CpG island 10844
Tssr159346 19 42128911 to 42128941 30 - TSS region transcription start site region 159346
Tssr159347 19 42128946 to 42128967 21 - TSS region transcription start site region 159347
Tssr159348 19 42128969 to 42128980 11 - TSS region transcription start site region 159348
Tssr159349 19 42128982 to 42129041 59 - TSS region transcription start site region 159349
Tssr159350 19 42129043 to 42129069 26 - TSS region transcription start site region 159350
Tssr159351 19 42135972 to 42136008 36 - TSS region transcription start site region 159351
Tssr159352 19 42142150 to 42142156 6 - TSS region transcription start site region 159352
Cpgi10845 19 42146975 to 42148694 1719 CpG island CpG island 10845
Tssr156484 19 42147373 to 42147388 15 + TSS region transcription start site region 156484
Marveld1 19 42147400 to 42151703 4303 + protein coding gene MARVEL (membrane-associating) domain containing 1
Tssr156485 19 42147413 to 42147426 13 + TSS region transcription start site region 156485
Tssr156486 19 42147432 to 42147454 22 + TSS region transcription start site region 156486
Tssr5518 19 42147466 to 42147471 5 + TSS region transcription start site region 5518
Tssr156487 19 42159628 to 42159635 7 + TSS region transcription start site region 156487
Gm6937 19 42159631 to 42160768 1137 + pseudogene predicted pseudogene 6937
Cpgi10846 19 42170257 to 42171069 812 CpG island CpG island 10846
Tssr156488 19 42170562 to 42170600 38 + TSS region transcription start site region 156488
Zfyve27 19 42170567 to 42194593 24026 + protein coding gene zinc finger, FYVE domain containing 27
Tssr156489 19 42170604 to 42170631 27 + TSS region transcription start site region 156489
Tssr5519 19 42177183 to 42177206 23 + TSS region transcription start site region 5519
Sfrp5 19 42197971 to 42202252 4281 - protein coding gene secreted frizzled-related sequence protein 5
Cpgi10847 19 42201173 to 42202428 1255 CpG island CpG island 10847
Tssr5520 19 42202105 to 42202110 5 - TSS region transcription start site region 5520
Tssr159353 19 42202116 to 42202130 14 - TSS region transcription start site region 159353
Tssr159354 19 42202131 to 42202140 9 - TSS region transcription start site region 159354
Tssr159355 19 42202150 to 42202164 14 - TSS region transcription start site region 159355
D19Mit90 19 42221252 to 42221372 120 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 90
Tssr156490 19 42238613 to 42238624 11 + TSS region transcription start site region 156490
Tssr156491 19 42247544 to 42247586 42 + TSS region transcription start site region 156491
Golga7b 19 42247578 to 42270348 22770 + protein coding gene golgi autoantigen, golgin subfamily a, 7B
Tssr156492 19 42255241 to 42255245 4 + TSS region transcription start site region 156492
Cpgi10848 19 42255449 to 42256420 971 CpG island CpG island 10848
Tssr156493 19 42255704 to 42255761 57 + TSS region transcription start site region 156493
Tssr156494 19 42255814 to 42255867 53 + TSS region transcription start site region 156494
Tssr156495 19 42255872 to 42255889 17 + TSS region transcription start site region 156495
Tssr156496 19 42255890 to 42255903 13 + TSS region transcription start site region 156496
Cpgi10849 19 42268265 to 42268654 389 CpG island CpG island 10849
Tssr156497 19 42268688 to 42268692 4 + TSS region transcription start site region 156497
Gm26339 19 42274964 to 42275062 98 + miRNA gene predicted gene, 26339
Gm34347 19 42276887 to 42314626 37739 + lncRNA gene predicted gene, 34347
Mir3085 19 42280082 to 42280170 88 - miRNA gene microRNA 3085
Crtac1 19 42283037 to 42431783 148746 - protein coding gene cartilage acidic protein 1
Tssr159356 19 42298076 to 42298093 17 - TSS region transcription start site region 159356
Tssr156498 19 42306465 to 42306497 32 + TSS region transcription start site region 156498
Tssr159357 19 42307102 to 42307116 14 - TSS region transcription start site region 159357
Tssr5521 19 42307125 to 42307134 9 - TSS region transcription start site region 5521
Cpgi10850 19 42380636 to 42381173 537 CpG island CpG island 10850
Gm41848 19 42387741 to 42397551 9810 - lncRNA gene predicted gene, 41848
D19Mit11.2 19 42394597 to 42394760 163 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 11.2
D19Mit11.1 19 42394609 to 42394755 146 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 11.1
D19Mit100 19 42400324 to 42400477 153 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 100
Gm34299 19 42402212 to 42413934 11722 + lncRNA gene predicted gene, 34299
Cpgi10851 19 42409248 to 42409459 211 CpG island CpG island 10851
Cpgi10852 19 42430975 to 42432810 1835 CpG island CpG island 10852
Tssr159358 19 42431747 to 42431760 13 - TSS region transcription start site region 159358
Tssr159359 19 42431778 to 42431792 14 - TSS region transcription start site region 159359
Ath16 19 42438478 to 42438566 88 QTL atherosclerosis 16
D19Mit120 19 42438478 to 42438566 88 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 120
Gm41849 19 42444057 to 42448376 4319 + lncRNA gene predicted gene, 41849
Gm41850 19 42483124 to 42486499 3375 - lncRNA gene predicted gene, 41850
D19Mit48 19 42487675 to 42487878 203 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 48
Gm41851 19 42509119 to 42512197 3078 - lncRNA gene predicted gene, 41851
Cpgi10853 19 42518412 to 42519329 917 CpG island CpG island 10853
R3hcc1l 19 42518759 to 42592343 73584 + protein coding gene R3H domain and coiled-coil containing 1 like
Tssr156499 19 42518770 to 42518794 24 + TSS region transcription start site region 156499
Tssr156500 19 42518795 to 42518830 35 + TSS region transcription start site region 156500
Tssr156501 19 42524864 to 42524866 2 + TSS region transcription start site region 156501
Tssr156502 19 42531306 to 42531314 8 + TSS region transcription start site region 156502
Gm16541 19 42536850 to 42563108 26258 - antisense lncRNA gene predicted gene 16541
Tssr156503 19 42550936 to 42550940 4 + TSS region transcription start site region 156503
B230214N19Rik 19 42551569 to 42552163 594 unclassified gene RIKEN cDNA B230214N19 gene
Tssr159360 19 42563065 to 42563098 33 - TSS region transcription start site region 159360
2810404I24Rik 19 42566035 to 42567961 1926 unclassified gene RIKEN cDNA 2810404I24 gene
D19Car3 19 42566563 to 42566663 100 DNA segment DNA segment, Chr 19, Carle 3
Tssr156504 19 42591523 to 42591529 6 + TSS region transcription start site region 156504
Loxl4 19 42593982 to 42612813 18831 - protein coding gene lysyl oxidase-like 4
Tssr159361 19 42599949 to 42599959 10 - TSS region transcription start site region 159361
Tssr159362 19 42600051 to 42600058 7 - TSS region transcription start site region 159362
Cpgi10854 19 42612544 to 42613316 772 CpG island CpG island 10854
Tssr159363 19 42612766 to 42612781 15 - TSS region transcription start site region 159363
Cpgi10855 19 42699211 to 42699615 404 CpG island CpG island 10855
Gm25216 19 42699777 to 42699902 125 - snoRNA gene predicted gene, 25216
Pyroxd2 19 42725858 to 42752775 26917 - protein coding gene pyridine nucleotide-disulphide oxidoreductase domain 2
Gm19437 19 42745691 to 42752329 6638 + lncRNA gene predicted gene, 19437
Tssr156505 19 42745804 to 42745815 11 + TSS region transcription start site region 156505
Cpgi10856 19 42752214 to 42752498 284 CpG island CpG island 10856
Tssr159364 19 42752459 to 42752517 58 - TSS region transcription start site region 159364
Tssr159365 19 42752710 to 42752721 11 - TSS region transcription start site region 159365
Hps1 19 42755191 to 42779996 24805 - protein coding gene HPS1, biogenesis of lysosomal organelles complex 3 subunit 1
Tssr159366 19 42767488 to 42767498 10 - TSS region transcription start site region 159366
Gm16244 19 42779032 to 42781454 2422 + lncRNA gene predicted gene 16244
Cpgi10857 19 42779605 to 42780317 712 CpG island CpG island 10857
Tssr159367 19 42779936 to 42779985 49 - TSS region transcription start site region 159367
Hpse2 19 42788947 to 43388311 599364 - protein coding gene heparanase 2
Cpgi10858 19 42795099 to 42795644 545 CpG island CpG island 10858
D19Dcr32 19 42975388 to 42975491 103 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 32
Tssr156506 19 43034945 to 43034956 11 + TSS region transcription start site region 156506
Tssr159368 19 43112411 to 43112412 1 - TSS region transcription start site region 159368
Gm22135 19 43160795 to 43160902 107 - rRNA gene predicted gene, 22135
Tssr159369 19 43248057 to 43248061 4 - TSS region transcription start site region 159369
Gm18379 19 43278429 to 43279303 874 - pseudogene predicted gene, 18379
Tssr156507 19 43280774 to 43280789 15 + TSS region transcription start site region 156507
Gm6776 19 43280798 to 43281697 899 + pseudogene predicted pseudogene 6776
Tssr156508 19 43281223 to 43281245 22 + TSS region transcription start site region 156508
Cpgi10859 19 43384762 to 43385653 891 CpG island CpG island 10859
Cpgi10860 19 43386188 to 43386882 694 CpG island CpG island 10860
8430434A19Rik 19 43386282 to 43387403 1121 unclassified gene RIKEN cDNA 8430434A19 gene
Tssr159370 19 43388197 to 43388224 27 - TSS region transcription start site region 159370
Tssr159371 19 43388292 to 43388305 13 - TSS region transcription start site region 159371
Tssr159372 19 43388338 to 43388349 11 - TSS region transcription start site region 159372
Tssr159373 19 43388355 to 43388369 14 - TSS region transcription start site region 159373
Tssr159374 19 43420665 to 43420692 27 - TSS region transcription start site region 159374
Gm38568 19 43424826 to 43427960 3134 + lncRNA gene predicted gene, 38568
Cpgi10861 19 43427352 to 43427739 387 CpG island CpG island 10861
Gm47936 19 43434610 to 43440460 5850 - antisense lncRNA gene predicted gene, 47936
Cpgi10862 19 43440075 to 43441978 1903 CpG island CpG island 10862
Tssr156509 19 43440404 to 43440447 43 + TSS region transcription start site region 156509
Cnnm1 19 43440436 to 43497210 56774 + protein coding gene cyclin M1
Gm47938 19 43457444 to 43469758 12314 - antisense lncRNA gene predicted gene, 47938
Tssr156510 19 43468380 to 43468383 3 + TSS region transcription start site region 156510
Tssr156511 19 43490103 to 43490107 4 + TSS region transcription start site region 156511
Got1 19 43499752 to 43524605 24853 - protein coding gene glutamic-oxaloacetic transaminase 1, soluble
Tssr159375 19 43500283 to 43500292 9 - TSS region transcription start site region 159375
Tssr159376 19 43500479 to 43500490 11 - TSS region transcription start site region 159376
Tssr159377 19 43502953 to 43502969 16 - TSS region transcription start site region 159377
Tssr159378 19 43504584 to 43504595 11 - TSS region transcription start site region 159378
Tssr159379 19 43506999 to 43507029 30 - TSS region transcription start site region 159379
Tssr159380 19 43510206 to 43510218 12 - TSS region transcription start site region 159380
Tssr159381 19 43511629 to 43511677 48 - TSS region transcription start site region 159381
Tssr159382 19 43521359 to 43521364 5 - TSS region transcription start site region 159382
Tssr156512 19 43523719 to 43523730 11 + TSS region transcription start site region 156512
Cpgi10863 19 43524196 to 43525276 1080 CpG island CpG island 10863
Tssr159383 19 43524369 to 43524373 4 - TSS region transcription start site region 159383
Tssr159384 19 43524462 to 43524580 118 - TSS region transcription start site region 159384
Tssr159385 19 43524756 to 43524761 5 - TSS region transcription start site region 159385
Tssr156513 19 43528325 to 43528332 7 + TSS region transcription start site region 156513
Tssr156514 19 43528340 to 43528351 11 + TSS region transcription start site region 156514
Tssr156515 19 43528360 to 43528373 13 + TSS region transcription start site region 156515
Gm19179 19 43544183 to 43544959 776 + pseudogene predicted gene, 19179
Gm34636 19 43545927 to 43568993 23066 - lncRNA gene predicted gene, 34636
Cpgi10864 19 43570997 to 43571451 454 CpG island CpG island 10864
Cpgi10865 19 43583604 to 43583812 208 CpG island CpG island 10865
Cpgi10866 19 43599688 to 43600108 420 CpG island CpG island 10866
Cpgi10867 19 43601000 to 43601869 869 CpG island CpG island 10867
Cpgi10868 19 43606687 to 43607255 568 CpG island CpG island 10868
Gm20467 19 43609077 to 43610625 1548 - lincRNA gene predicted gene 20467
Cpgi10869 19 43610246 to 43610904 658 CpG island CpG island 10869
Gm46656 19 43610832 to 43611890 1058 - lncRNA gene predicted gene, 46656
Cpgi10870 19 43612018 to 43612945 927 CpG island CpG island 10870
Tssr156516 19 43612299 to 43612321 22 + TSS region transcription start site region 156516
Nkx2-3 19 43612325 to 43615892 3567 + protein coding gene NK2 homeobox 3
Tssr156517 19 43612392 to 43612416 24 + TSS region transcription start site region 156517
Cpgi10871 19 43613954 to 43615399 1445 CpG island CpG island 10871
Cpgi10872 19 43615918 to 43616920 1002 CpG island CpG island 10872
Cpgi10873 19 43617045 to 43617197 152 CpG island CpG island 10873
Cpgi10874 19 43619977 to 43620370 393 CpG island CpG island 10874
Gm22646 19 43622446 to 43622560 114 + miRNA gene predicted gene, 22646
Gm4311 19 43637372 to 43642404 5032 - unclassified gene predicted gene 4311
Gm34922 19 43645554 to 43655630 10076 + lncRNA gene predicted gene, 34922
Tssr156518 19 43647480 to 43647485 5 + TSS region transcription start site region 156518
Slc25a28 19 43663822 to 43674881 11059 - protein coding gene solute carrier family 25, member 28
Cpgi10875 19 43674109 to 43676161 2052 CpG island CpG island 10875
Tssr159386 19 43674844 to 43674909 65 - TSS region transcription start site region 159386
Tssr156519 19 43675173 to 43675192 19 + TSS region transcription start site region 156519
BC037704 19 43675178 to 43677170 1992 + lncRNA gene cDNA sequence BC037704
Tssr156520 19 43675460 to 43675482 22 + TSS region transcription start site region 156520
Cpgi10876 19 43689388 to 43690276 888 CpG island CpG island 10876
Tssr156521 19 43689647 to 43689658 11 + TSS region transcription start site region 156521
Tssr156522 19 43689672 to 43689695 23 + TSS region transcription start site region 156522
Entpd7 19 43689672 to 43733697 44025 + protein coding gene ectonucleoside triphosphate diphosphohydrolase 7