Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4194643-4594647

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101 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp1ca 19 4192174 to 4195419 3245 + protein coding gene protein phosphatase 1 catalytic subunit alpha
Tssr154295 19 4194622 to 4194647 25 + TSS region transcription start site region 154295
Tssr154296 19 4195028 to 4195057 29 + TSS region transcription start site region 154296
Rad9a 19 4195198 to 4201603 6405 - protein coding gene RAD9 checkpoint clamp component A
Cpgi10391 19 4201227 to 4201974 747 CpG island CpG island 10391
Tssr157469 19 4201375 to 4201425 50 - TSS region transcription start site region 157469
Tssr157470 19 4201571 to 4201589 18 - TSS region transcription start site region 157470
Tssr157471 19 4201591 to 4201623 32 - TSS region transcription start site region 157471
Gm30082 19 4201706 to 4203240 1534 + lncRNA gene predicted gene, 30082
Tssr154297 19 4201797 to 4201816 19 + TSS region transcription start site region 154297
Tssr154298 19 4204194 to 4204207 13 + TSS region transcription start site region 154298
Tssr154299 19 4204211 to 4204221 10 + TSS region transcription start site region 154299
Cpgi10392 19 4214154 to 4215713 1559 CpG island CpG island 10392
Clcf1 19 4214238 to 4223490 9252 + protein coding gene cardiotrophin-like cytokine factor 1
Gm45928 19 4214238 to 4233634 19396 + lncRNA gene predicted gene, 45928
Tssr154300 19 4214351 to 4214363 12 + TSS region transcription start site region 154300
Tssr154301 19 4214367 to 4214375 8 + TSS region transcription start site region 154301
Tssr154302 19 4214383 to 4214397 14 + TSS region transcription start site region 154302
Tssr154303 19 4214416 to 4214432 16 + TSS region transcription start site region 154303
Gm26115 19 4215402 to 4215488 86 - miRNA gene predicted gene, 26115
Tssr154304 19 4215832 to 4215847 15 + TSS region transcription start site region 154304
Tssr157472 19 4216095 to 4216110 15 - TSS region transcription start site region 157472
Tssr5404 19 4231612 to 4231657 45 - TSS region transcription start site region 5404
Cpgi10393 19 4231726 to 4231937 211 CpG island CpG island 10393
Pold4 19 4231899 to 4233631 1732 + protein coding gene polymerase (DNA-directed), delta 4
Tssr154305 19 4231910 to 4231928 18 + TSS region transcription start site region 154305
Tssr154306 19 4231931 to 4231959 28 + TSS region transcription start site region 154306
Tssr154307 19 4231961 to 4231977 16 + TSS region transcription start site region 154307
Tssr154308 19 4231989 to 4232000 11 + TSS region transcription start site region 154308
Tssr154309 19 4232408 to 4232425 17 + TSS region transcription start site region 154309
Tssr154310 19 4232435 to 4232479 44 + TSS region transcription start site region 154310
Tssr154311 19 4232783 to 4232804 21 + TSS region transcription start site region 154311
Tssr154312 19 4237020 to 4237021 1 + TSS region transcription start site region 154312
Tssr5405 19 4238785 to 4238788 3 + TSS region transcription start site region 5405
Cpgi10394 19 4257211 to 4258017 806 CpG island CpG island 10394
Tssr157473 19 4257604 to 4257611 7 - TSS region transcription start site region 157473
Tssr157474 19 4257623 to 4257644 21 - TSS region transcription start site region 157474
Ssh3 19 4261668 to 4269172 7504 - protein coding gene slingshot protein phosphatase 3
Tssr5406 19 4262516 to 4262517 1 + TSS region transcription start site region 5406
Mir6985 19 4263818 to 4263878 60 - miRNA gene microRNA 6985
Cpgi10395 19 4268741 to 4269442 701 CpG island CpG island 10395
Tssr157475 19 4269078 to 4269126 48 - TSS region transcription start site region 157475
Tssr157476 19 4269140 to 4269200 60 - TSS region transcription start site region 157476
Tssr157477 19 4269218 to 4269238 20 - TSS region transcription start site region 157477
Tssr157478 19 4269239 to 4269292 53 - TSS region transcription start site region 157478
Ankrd13d 19 4270180 to 4283137 12957 - protein coding gene ankyrin repeat domain 13 family, member D
Cpgi10396 19 4282619 to 4283490 871 CpG island CpG island 10396
Tssr157479 19 4283085 to 4283142 57 - TSS region transcription start site region 157479
Grk2 19 4286001 to 4306222 20221 - protein coding gene G protein-coupled receptor kinase 2
Tssr154313 19 4295623 to 4295629 6 + TSS region transcription start site region 154313
Tssr154314 19 4300614 to 4300625 11 + TSS region transcription start site region 154314
Tssr154315 19 4300626 to 4300643 17 + TSS region transcription start site region 154315
Tssr154316 19 4302519 to 4302546 27 + TSS region transcription start site region 154316
Cpgi10397 19 4305522 to 4306797 1275 CpG island CpG island 10397
Tssr157480 19 4306010 to 4306044 34 - TSS region transcription start site region 157480
Tssr157481 19 4306215 to 4306369 154 - TSS region transcription start site region 157481
Kdm2a 19 4316144 to 4398596 82452 - protein coding gene lysine (K)-specific demethylase 2A
Tssr157482 19 4318695 to 4318710 15 - TSS region transcription start site region 157482
Tssr157483 19 4321553 to 4321563 10 - TSS region transcription start site region 157483
Tssr157484 19 4333194 to 4333200 6 - TSS region transcription start site region 157484
Cpgi10398 19 4333803 to 4334072 269 CpG island CpG island 10398
Tssr157485 19 4333840 to 4333972 132 - TSS region transcription start site region 157485
Tssr157486 19 4334016 to 4334031 15 - TSS region transcription start site region 157486
Tssr157487 19 4377360 to 4377364 4 - TSS region transcription start site region 157487
Tssr157488 19 4388198 to 4388203 5 - TSS region transcription start site region 157488
Tssr157489 19 4394643 to 4394647 4 - TSS region transcription start site region 157489
Cpgi10399 19 4396445 to 4398710 2265 CpG island CpG island 10399
Tssr154317 19 4396484 to 4396497 13 + TSS region transcription start site region 154317
Tssr157490 19 4397052 to 4397098 46 - TSS region transcription start site region 157490
9430078G10Rik 19 4397713 to 4399820 2107 unclassified gene RIKEN cDNA 9430078G10 gene
Rhod 19 4425457 to 4439424 13967 - protein coding gene ras homolog family member D
Cpgi10400 19 4438907 to 4439883 976 CpG island CpG island 10400
A930001C03Rik 19 4439323 to 4448325 9002 + lncRNA gene RIKEN cDNA A930001C03 gene
Tssr157491 19 4439369 to 4439386 17 - TSS region transcription start site region 157491
Tssr157492 19 4439388 to 4439450 62 - TSS region transcription start site region 157492
Tssr154318 19 4439511 to 4439539 28 + TSS region transcription start site region 154318
Tssr157493 19 4440398 to 4440409 11 - TSS region transcription start site region 157493
Tssr157494 19 4440447 to 4440458 11 - TSS region transcription start site region 157494
Syt12 19 4445908 to 4477143 31235 - protein coding gene synaptotagmin XII
Cpgi10401 19 4476248 to 4477511 1263 CpG island CpG island 10401
Tssr157495 19 4477119 to 4477161 42 - TSS region transcription start site region 157495
Tssr157496 19 4477567 to 4477592 25 - TSS region transcription start site region 157496
2010003K11Rik 19 4496790 to 4498583 1793 - protein coding gene RIKEN cDNA 2010003K11 gene
Tssr157497 19 4498399 to 4498410 11 - TSS region transcription start site region 157497
Tssr157498 19 4498532 to 4498543 11 - TSS region transcription start site region 157498
Tssr157499 19 4498547 to 4498572 25 - TSS region transcription start site region 157499
Tssr157500 19 4498574 to 4498596 22 - TSS region transcription start site region 157500
Tssr157501 19 4498603 to 4498614 11 - TSS region transcription start site region 157501
Cpgi10402 19 4509839 to 4511261 1422 CpG island CpG island 10402
Pcx 19 4510472 to 4621752 111280 + protein coding gene pyruvate carboxylase
Tssr154319 19 4510480 to 4510487 7 + TSS region transcription start site region 154319
Tssr154320 19 4510498 to 4510508 10 + TSS region transcription start site region 154320
Tssr154321 19 4510510 to 4510532 22 + TSS region transcription start site region 154321
Tssr154322 19 4510536 to 4510552 16 + TSS region transcription start site region 154322
Tssr154323 19 4517781 to 4517811 30 + TSS region transcription start site region 154323
Tssr154324 19 4558007 to 4558011 4 + TSS region transcription start site region 154324
Tssr154325 19 4558808 to 4558816 8 + TSS region transcription start site region 154325
Tssr154326 19 4594312 to 4594332 20 + TSS region transcription start site region 154326
Tssr154327 19 4594337 to 4594361 24 + TSS region transcription start site region 154327
Tssr154328 19 4594363 to 4594394 31 + TSS region transcription start site region 154328
Tssr154329 19 4594398 to 4594422 24 + TSS region transcription start site region 154329