Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:4179042-5869155

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798 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tssr5403 19 4180633 to 4180636 3 + TSS region transcription start site region 5403
Tssr154291 19 4180657 to 4180670 13 + TSS region transcription start site region 154291
Tssr157462 19 4181919 to 4181930 11 - TSS region transcription start site region 157462
Tbc1d10c 19 4184358 to 4191047 6689 - protein coding gene TBC1 domain family, member 10c
Tssr157463 19 4186111 to 4186123 12 - TSS region transcription start site region 157463
Tssr157464 19 4188756 to 4188761 5 - TSS region transcription start site region 157464
Tssr157465 19 4190959 to 4190976 17 - TSS region transcription start site region 157465
Tssr157466 19 4190985 to 4191029 44 - TSS region transcription start site region 157466
Tssr157467 19 4191035 to 4191069 34 - TSS region transcription start site region 157467
Tssr157468 19 4191076 to 4191083 7 - TSS region transcription start site region 157468
Cpgi10390 19 4191616 to 4192850 1234 CpG island CpG island 10390
Tssr154292 19 4192120 to 4192125 5 + TSS region transcription start site region 154292
Tssr154293 19 4192129 to 4192217 88 + TSS region transcription start site region 154293
Ppp1ca 19 4192174 to 4195419 3245 + protein coding gene protein phosphatase 1 catalytic subunit alpha
Tssr154294 19 4193101 to 4193130 29 + TSS region transcription start site region 154294
Tssr154295 19 4194622 to 4194647 25 + TSS region transcription start site region 154295
Tssr154296 19 4195028 to 4195057 29 + TSS region transcription start site region 154296
Rad9a 19 4195198 to 4201603 6405 - protein coding gene RAD9 checkpoint clamp component A
Cpgi10391 19 4201227 to 4201974 747 CpG island CpG island 10391
Tssr157469 19 4201375 to 4201425 50 - TSS region transcription start site region 157469
Tssr157470 19 4201571 to 4201589 18 - TSS region transcription start site region 157470
Tssr157471 19 4201591 to 4201623 32 - TSS region transcription start site region 157471
Gm30082 19 4201706 to 4203240 1534 + lncRNA gene predicted gene, 30082
Tssr154297 19 4201797 to 4201816 19 + TSS region transcription start site region 154297
Tssr154298 19 4204194 to 4204207 13 + TSS region transcription start site region 154298
Tssr154299 19 4204211 to 4204221 10 + TSS region transcription start site region 154299
Cpgi10392 19 4214154 to 4215713 1559 CpG island CpG island 10392
Clcf1 19 4214238 to 4223490 9252 + protein coding gene cardiotrophin-like cytokine factor 1
Gm45928 19 4214238 to 4233634 19396 + lncRNA gene predicted gene, 45928
Tssr154300 19 4214351 to 4214363 12 + TSS region transcription start site region 154300
Tssr154301 19 4214367 to 4214375 8 + TSS region transcription start site region 154301
Tssr154302 19 4214383 to 4214397 14 + TSS region transcription start site region 154302
Tssr154303 19 4214416 to 4214432 16 + TSS region transcription start site region 154303
Gm26115 19 4215402 to 4215488 86 - miRNA gene predicted gene, 26115
Tssr154304 19 4215832 to 4215847 15 + TSS region transcription start site region 154304
Tssr157472 19 4216095 to 4216110 15 - TSS region transcription start site region 157472
Tssr5404 19 4231612 to 4231657 45 - TSS region transcription start site region 5404
Cpgi10393 19 4231726 to 4231937 211 CpG island CpG island 10393
Pold4 19 4231899 to 4233631 1732 + protein coding gene polymerase (DNA-directed), delta 4
Tssr154305 19 4231910 to 4231928 18 + TSS region transcription start site region 154305
Tssr154306 19 4231931 to 4231959 28 + TSS region transcription start site region 154306
Tssr154307 19 4231961 to 4231977 16 + TSS region transcription start site region 154307
Tssr154308 19 4231989 to 4232000 11 + TSS region transcription start site region 154308
Tssr154309 19 4232408 to 4232425 17 + TSS region transcription start site region 154309
Tssr154310 19 4232435 to 4232479 44 + TSS region transcription start site region 154310
Tssr154311 19 4232783 to 4232804 21 + TSS region transcription start site region 154311
Tssr154312 19 4237020 to 4237021 1 + TSS region transcription start site region 154312
Tssr5405 19 4238785 to 4238788 3 + TSS region transcription start site region 5405
Cpgi10394 19 4257211 to 4258017 806 CpG island CpG island 10394
Tssr157473 19 4257604 to 4257611 7 - TSS region transcription start site region 157473
Tssr157474 19 4257623 to 4257644 21 - TSS region transcription start site region 157474
Ssh3 19 4261668 to 4269172 7504 - protein coding gene slingshot protein phosphatase 3
Tssr5406 19 4262516 to 4262517 1 + TSS region transcription start site region 5406
Mir6985 19 4263818 to 4263878 60 - miRNA gene microRNA 6985
Cpgi10395 19 4268741 to 4269442 701 CpG island CpG island 10395
Tssr157475 19 4269078 to 4269126 48 - TSS region transcription start site region 157475
Tssr157476 19 4269140 to 4269200 60 - TSS region transcription start site region 157476
Tssr157477 19 4269218 to 4269238 20 - TSS region transcription start site region 157477
Tssr157478 19 4269239 to 4269292 53 - TSS region transcription start site region 157478
Ankrd13d 19 4270180 to 4283137 12957 - protein coding gene ankyrin repeat domain 13 family, member D
Cpgi10396 19 4282619 to 4283490 871 CpG island CpG island 10396
Tssr157479 19 4283085 to 4283142 57 - TSS region transcription start site region 157479
Grk2 19 4286001 to 4306222 20221 - protein coding gene G protein-coupled receptor kinase 2
Tssr154313 19 4295623 to 4295629 6 + TSS region transcription start site region 154313
Tssr154314 19 4300614 to 4300625 11 + TSS region transcription start site region 154314
Tssr154315 19 4300626 to 4300643 17 + TSS region transcription start site region 154315
Tssr154316 19 4302519 to 4302546 27 + TSS region transcription start site region 154316
Cpgi10397 19 4305522 to 4306797 1275 CpG island CpG island 10397
Tssr157480 19 4306010 to 4306044 34 - TSS region transcription start site region 157480
Tssr157481 19 4306215 to 4306369 154 - TSS region transcription start site region 157481
Kdm2a 19 4316144 to 4398596 82452 - protein coding gene lysine (K)-specific demethylase 2A
Tssr157482 19 4318695 to 4318710 15 - TSS region transcription start site region 157482
Tssr157483 19 4321553 to 4321563 10 - TSS region transcription start site region 157483
Tssr157484 19 4333194 to 4333200 6 - TSS region transcription start site region 157484
Cpgi10398 19 4333803 to 4334072 269 CpG island CpG island 10398
Tssr157485 19 4333840 to 4333972 132 - TSS region transcription start site region 157485
Tssr157486 19 4334016 to 4334031 15 - TSS region transcription start site region 157486
Tssr157487 19 4377360 to 4377364 4 - TSS region transcription start site region 157487
Tssr157488 19 4388198 to 4388203 5 - TSS region transcription start site region 157488
Tssr157489 19 4394643 to 4394647 4 - TSS region transcription start site region 157489
Cpgi10399 19 4396445 to 4398710 2265 CpG island CpG island 10399
Tssr154317 19 4396484 to 4396497 13 + TSS region transcription start site region 154317
Tssr157490 19 4397052 to 4397098 46 - TSS region transcription start site region 157490
9430078G10Rik 19 4397713 to 4399820 2107 unclassified gene RIKEN cDNA 9430078G10 gene
Rhod 19 4425457 to 4439424 13967 - protein coding gene ras homolog family member D
Cpgi10400 19 4438907 to 4439883 976 CpG island CpG island 10400
A930001C03Rik 19 4439323 to 4448325 9002 + lncRNA gene RIKEN cDNA A930001C03 gene
Tssr157491 19 4439369 to 4439386 17 - TSS region transcription start site region 157491
Tssr157492 19 4439388 to 4439450 62 - TSS region transcription start site region 157492
Tssr154318 19 4439511 to 4439539 28 + TSS region transcription start site region 154318
Tssr157493 19 4440398 to 4440409 11 - TSS region transcription start site region 157493
Tssr157494 19 4440447 to 4440458 11 - TSS region transcription start site region 157494
Syt12 19 4445908 to 4477143 31235 - protein coding gene synaptotagmin XII
Cpgi10401 19 4476248 to 4477511 1263 CpG island CpG island 10401
Tssr157495 19 4477119 to 4477161 42 - TSS region transcription start site region 157495
Tssr157496 19 4477567 to 4477592 25 - TSS region transcription start site region 157496
2010003K11Rik 19 4496790 to 4498583 1793 - protein coding gene RIKEN cDNA 2010003K11 gene
Tssr157497 19 4498399 to 4498410 11 - TSS region transcription start site region 157497
Tssr157498 19 4498532 to 4498543 11 - TSS region transcription start site region 157498
Tssr157499 19 4498547 to 4498572 25 - TSS region transcription start site region 157499
Tssr157500 19 4498574 to 4498596 22 - TSS region transcription start site region 157500
Tssr157501 19 4498603 to 4498614 11 - TSS region transcription start site region 157501
Cpgi10402 19 4509839 to 4511261 1422 CpG island CpG island 10402
Pcx 19 4510472 to 4621752 111280 + protein coding gene pyruvate carboxylase
Tssr154319 19 4510480 to 4510487 7 + TSS region transcription start site region 154319
Tssr154320 19 4510498 to 4510508 10 + TSS region transcription start site region 154320
Tssr154321 19 4510510 to 4510532 22 + TSS region transcription start site region 154321
Tssr154322 19 4510536 to 4510552 16 + TSS region transcription start site region 154322
Tssr154323 19 4517781 to 4517811 30 + TSS region transcription start site region 154323
Tssr154324 19 4558007 to 4558011 4 + TSS region transcription start site region 154324
Tssr154325 19 4558808 to 4558816 8 + TSS region transcription start site region 154325
Tssr154326 19 4594312 to 4594332 20 + TSS region transcription start site region 154326
Tssr154327 19 4594337 to 4594361 24 + TSS region transcription start site region 154327
Tssr154328 19 4594363 to 4594394 31 + TSS region transcription start site region 154328
Tssr154329 19 4594398 to 4594422 24 + TSS region transcription start site region 154329
Tssr5407 19 4601665 to 4601681 16 + TSS region transcription start site region 5407
Tssr154330 19 4603074 to 4603079 5 + TSS region transcription start site region 154330
Tssr154331 19 4603090 to 4603102 12 + TSS region transcription start site region 154331
Tssr154332 19 4603126 to 4603145 19 + TSS region transcription start site region 154332
Tssr154333 19 4604533 to 4604541 8 + TSS region transcription start site region 154333
Tssr154334 19 4609920 to 4609940 20 + TSS region transcription start site region 154334
Lrfn4 19 4611785 to 4615667 3882 - protein coding gene leucine rich repeat and fibronectin type III domain containing 4
Cpgi10403 19 4614279 to 4616070 1791 CpG island CpG island 10403
Tssr157502 19 4615145 to 4615199 54 - TSS region transcription start site region 157502
Tssr157503 19 4615453 to 4615512 59 - TSS region transcription start site region 157503
Tssr157504 19 4615518 to 4615539 21 - TSS region transcription start site region 157504
Tssr157505 19 4615647 to 4615700 53 - TSS region transcription start site region 157505
Tssr154335 19 4618432 to 4618449 17 + TSS region transcription start site region 154335
Tssr154336 19 4621135 to 4621148 13 + TSS region transcription start site region 154336
Rce1 19 4622591 to 4625641 3050 - protein coding gene Ras converting CAAX endopeptidase 1
Mir6986 19 4623898 to 4623955 57 - miRNA gene microRNA 6986
Cpgi10404 19 4625016 to 4626186 1170 CpG island CpG island 10404
Tssr157506 19 4625084 to 4625123 39 - TSS region transcription start site region 157506
Tssr157507 19 4625272 to 4625321 49 - TSS region transcription start site region 157507
Tssr157508 19 4625323 to 4625361 38 - TSS region transcription start site region 157508
9030625N01Rik 19 4625394 to 4629856 4462 unclassified non-coding RNA gene RIKEN cDNA 9030625N01 gene
Tssr157509 19 4625612 to 4625658 46 - TSS region transcription start site region 157509
Gm960 19 4625734 to 4698668 72934 - protein coding gene predicted gene 960
Cpgi10405 19 4697962 to 4698715 753 CpG island CpG island 10405
Tssr154337 19 4711153 to 4711258 105 + TSS region transcription start site region 154337
Sptbn2 19 4711223 to 4752359 41136 + protein coding gene spectrin beta, non-erythrocytic 2
Tssr154338 19 4711259 to 4711270 11 + TSS region transcription start site region 154338
Tssr154339 19 4711276 to 4711287 11 + TSS region transcription start site region 154339
Tssr154340 19 4711345 to 4711354 9 + TSS region transcription start site region 154340
Tssr154341 19 4711358 to 4711361 3 + TSS region transcription start site region 154341
Tssr154342 19 4711366 to 4711381 15 + TSS region transcription start site region 154342
Tssr154343 19 4711393 to 4711414 21 + TSS region transcription start site region 154343
Tssr154344 19 4711427 to 4711438 11 + TSS region transcription start site region 154344
Cpgi10406 19 4711497 to 4712947 1450 CpG island CpG island 10406
Gm42061 19 4711651 to 4720886 9235 - protein coding gene predicted gene, 42061
Tssr154345 19 4711954 to 4711982 28 + TSS region transcription start site region 154345
Tssr154346 19 4711995 to 4712008 13 + TSS region transcription start site region 154346
Tssr154347 19 4712071 to 4712111 40 + TSS region transcription start site region 154347
Tssr154348 19 4712118 to 4712173 55 + TSS region transcription start site region 154348
Tssr154349 19 4712204 to 4712218 14 + TSS region transcription start site region 154349
Tssr154350 19 4721060 to 4721165 105 + TSS region transcription start site region 154350
Tssr154351 19 4721184 to 4721195 11 + TSS region transcription start site region 154351
Tssr154352 19 4721215 to 4721225 10 + TSS region transcription start site region 154352
Tssr154353 19 4721276 to 4721283 7 + TSS region transcription start site region 154353
Tssr154354 19 4731148 to 4731154 6 + TSS region transcription start site region 154354
Cpgi10407 19 4745795 to 4745955 160 CpG island CpG island 10407
Cpgi10408 19 4756176 to 4757057 881 CpG island CpG island 10408
Tssr154355 19 4756436 to 4756443 7 + TSS region transcription start site region 154355
Tssr154356 19 4756463 to 4756476 13 + TSS region transcription start site region 154356
Tssr154357 19 4756488 to 4756497 9 + TSS region transcription start site region 154357
Tssr154358 19 4756527 to 4756556 29 + TSS region transcription start site region 154358
Rbm4b 19 4756543 to 4767065 10522 + protein coding gene RNA binding motif protein 4B
Tssr154359 19 4756557 to 4756623 66 + TSS region transcription start site region 154359
Tssr154360 19 4756831 to 4756869 38 + TSS region transcription start site region 154360
Tssr157510 19 4759215 to 4759217 2 - TSS region transcription start site region 157510
Gm37206 19 4762103 to 4765171 3068 - unclassified gene predicted gene, 37206
Tssr157511 19 4774069 to 4774070 1 - TSS region transcription start site region 157511
Gm19103 19 4778072 to 4778697 625 + pseudogene predicted gene, 19103
Rbm4 19 4784293 to 4793901 9608 - protein coding gene RNA binding motif protein 4
Gm21992 19 4784293 to 4811634 27341 - protein coding gene predicted gene 21992
Cpgi10409 19 4793611 to 4794385 774 CpG island CpG island 10409
Tssr157512 19 4793854 to 4793905 51 - TSS region transcription start site region 157512
5430440L12Rik 19 4794719 to 4795955 1236 unclassified gene RIKEN cDNA 5430440L12 gene
Rbm14 19 4800569 to 4811634 11065 - protein coding gene RNA binding motif protein 14
Tssr157513 19 4801356 to 4801370 14 - TSS region transcription start site region 157513
Gm21844 19 4801512 to 4805784 4272 + antisense lncRNA gene predicted gene, 21844
Cpgi10410 19 4802568 to 4802847 279 CpG island CpG island 10410
Tssr157514 19 4802605 to 4802625 20 - TSS region transcription start site region 157514
Cpgi10411 19 4810652 to 4812018 1366 CpG island CpG island 10411
Tssr157515 19 4811589 to 4811619 30 - TSS region transcription start site region 157515
Tssr154361 19 4811836 to 4811864 28 + TSS region transcription start site region 154361
Ccs 19 4825366 to 4839322 13956 - protein coding gene copper chaperone for superoxide dismutase
Tssr157516 19 4828636 to 4828642 6 - TSS region transcription start site region 157516
Cpgi10412 19 4839048 to 4839986 938 CpG island CpG island 10412
Tssr157517 19 4839256 to 4839278 22 - TSS region transcription start site region 157517
Tssr157518 19 4839286 to 4839338 52 - TSS region transcription start site region 157518
Ccdc87 19 4839366 to 4842528 3162 + protein coding gene coiled-coil domain containing 87
Tssr154362 19 4839409 to 4839482 73 + TSS region transcription start site region 154362
Cpgi10413 19 4854835 to 4855860 1025 CpG island CpG island 10413
Ctsf 19 4855129 to 4860912 5783 + protein coding gene cathepsin F
Tssr154363 19 4855147 to 4855269 122 + TSS region transcription start site region 154363
Tssr154364 19 4859222 to 4859262 40 + TSS region transcription start site region 154364
Tssr154365 19 4859373 to 4859386 13 + TSS region transcription start site region 154365
Tssr154366 19 4859409 to 4859422 13 + TSS region transcription start site region 154366
Actn3 19 4861223 to 4877909 16686 - protein coding gene actinin alpha 3