Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:41780037-42401151

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168 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Tlsr8 19 25158638 to 42400477 17241839 QTL thymic lymphoma suppressor region 8
Arhgap19 19 41766588 to 41802084 35496 - protein coding gene Rho GTPase activating protein 19
Tssr159320 19 41794994 to 41795032 38 - TSS region transcription start site region 159320
Cpgi10834 19 41801587 to 41802293 706 CpG island CpG island 10834
Tssr159321 19 41802028 to 41802060 32 - TSS region transcription start site region 159321
Gm41847 19 41807949 to 41819642 11693 - lncRNA gene predicted gene, 41847
Cpgi10835 19 41829663 to 41831323 1660 CpG island CpG island 10835
Frat1 19 41829970 to 41832583 2613 + protein coding gene frequently rearranged in advanced T cell lymphomas
Tssr156433 19 41829994 to 41830026 32 + TSS region transcription start site region 156433
Tssr156434 19 41830027 to 41830049 22 + TSS region transcription start site region 156434
Tssr156435 19 41831272 to 41831276 4 + TSS region transcription start site region 156435
Frat2 19 41845972 to 41848132 2160 - protein coding gene frequently rearranged in advanced T cell lymphomas 2
Cpgi10836 19 41846832 to 41848585 1753 CpG island CpG island 10836
Tssr159322 19 41848055 to 41848066 11 - TSS region transcription start site region 159322
Tssr159323 19 41848076 to 41848111 35 - TSS region transcription start site region 159323
Tssr159324 19 41848233 to 41848246 13 - TSS region transcription start site region 159324
Tssr159325 19 41848290 to 41848310 20 - TSS region transcription start site region 159325
Tssr156436 19 41848512 to 41848515 3 + TSS region transcription start site region 156436
Tssr156437 19 41848788 to 41848803 15 + TSS region transcription start site region 156437
Rrp12 19 41862852 to 41896153 33301 - protein coding gene ribosomal RNA processing 12 homolog (S. cerevisiae)
Cpgi10837 19 41895622 to 41896610 988 CpG island CpG island 10837
Tssr159326 19 41896132 to 41896155 23 - TSS region transcription start site region 159326
Tssr159327 19 41896160 to 41896207 47 - TSS region transcription start site region 159327
Tssr156438 19 41896291 to 41896312 21 + TSS region transcription start site region 156438
Tssr5515 19 41900806 to 41900809 3 - TSS region transcription start site region 5515
Gm46644 19 41900999 to 41903231 2232 + pseudogene predicted gene, 46644
Cpgi10838 19 41911540 to 41912716 1176 CpG island CpG island 10838
Tssr156439 19 41911697 to 41911705 8 + TSS region transcription start site region 156439
Tssr159328 19 41911751 to 41911779 28 - TSS region transcription start site region 159328
Tssr159329 19 41911811 to 41911820 9 - TSS region transcription start site region 159329
Tssr156440 19 41911851 to 41911874 23 + TSS region transcription start site region 156440
Pgam1 19 41911871 to 41918664 6793 + protein coding gene phosphoglycerate mutase 1
Tssr156441 19 41911875 to 41911895 20 + TSS region transcription start site region 156441
Tssr156442 19 41911896 to 41911908 12 + TSS region transcription start site region 156442
Tssr156443 19 41911920 to 41911934 14 + TSS region transcription start site region 156443
Tssr156444 19 41911945 to 41911966 21 + TSS region transcription start site region 156444
Tssr156445 19 41912011 to 41912036 25 + TSS region transcription start site region 156445
Tssr159330 19 41916908 to 41916909 1 - TSS region transcription start site region 159330
Tssr159331 19 41917024 to 41917030 6 - TSS region transcription start site region 159331
Tssr156446 19 41917157 to 41917161 4 + TSS region transcription start site region 156446
Tssr156447 19 41917773 to 41917805 32 + TSS region transcription start site region 156447
B130024M06Rik 19 41919649 to 41922417 2768 unclassified non-coding RNA gene RIKEN cDNA B130024M06 gene
Exosc1 19 41922980 to 41933314 10334 - protein coding gene exosome component 1
Cpgi10839 19 41932603 to 41933863 1260 CpG island CpG island 10839
Tssr156448 19 41932827 to 41932844 17 + TSS region transcription start site region 156448
Tssr159332 19 41933276 to 41933319 43 - TSS region transcription start site region 159332
Tssr156449 19 41933464 to 41933540 76 + TSS region transcription start site region 156449
Zdhhc16 19 41933480 to 41944104 10624 + protein coding gene zinc finger, DHHC domain containing 16
Tssr156450 19 41933908 to 41933912 4 + TSS region transcription start site region 156450
Mms19 19 41943707 to 41981165 37458 - protein coding gene MMS19 cytosolic iron-sulfur assembly component
Tssr159333 19 41964601 to 41964604 3 - TSS region transcription start site region 159333
Tssr159334 19 41966658 to 41966661 3 - TSS region transcription start site region 159334
B130065D12Rik 19 41972104 to 41974521 2417 unclassified gene RIKEN cDNA B130065D12 gene
Gm23113 19 41975188 to 41975286 98 + snRNA gene predicted gene, 23113
Cpgi10840 19 41980502 to 41982781 2279 CpG island CpG island 10840
Tssr5516 19 41981113 to 41981118 5 - TSS region transcription start site region 5516
Tssr159335 19 41981119 to 41981150 31 - TSS region transcription start site region 159335
Tssr156451 19 41981227 to 41981246 19 + TSS region transcription start site region 156451
Tssr156452 19 41981255 to 41981283 28 + TSS region transcription start site region 156452
Tssr156453 19 41981323 to 41981349 26 + TSS region transcription start site region 156453
Tssr156454 19 41981470 to 41981481 11 + TSS region transcription start site region 156454
Tssr156455 19 41981623 to 41981638 15 + TSS region transcription start site region 156455
Tssr156456 19 41981661 to 41981706 45 + TSS region transcription start site region 156456
Tssr156457 19 41981709 to 41981778 69 + TSS region transcription start site region 156457
Ubtd1 19 41981763 to 42034641 52878 + protein coding gene ubiquitin domain containing 1
Tssr5517 19 41981787 to 41981798 11 + TSS region transcription start site region 5517
E130107B13Rik 19 41986562 to 41990399 3837 unclassified gene RIKEN cDNA E130107B13 gene
Ebm1 19 42000000 to 42000000 0 QTL Epidermolysis Bullosa modifier 1
D19Dcr29 19 42001344 to 42001439 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 29
Tssr156458 19 42019390 to 42019411 21 + TSS region transcription start site region 156458
D19Dcr30 19 42020274 to 42020369 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 30
Tssr156459 19 42022199 to 42022217 18 + TSS region transcription start site region 156459
Tssr156460 19 42036025 to 42036032 7 + TSS region transcription start site region 156460
Ankrd2 19 42036038 to 42045110 9072 + protein coding gene ankyrin repeat domain 2 (stretch responsive muscle)
D19Dcr31 19 42036420 to 42036519 99 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 31
Tssr156461 19 42041629 to 42041643 14 + TSS region transcription start site region 156461
Hoga1 19 42045851 to 42070939 25088 + protein coding gene 4-hydroxy-2-oxoglutarate aldolase 1
Tssr156462 19 42045858 to 42045897 39 + TSS region transcription start site region 156462
Tssr156463 19 42046789 to 42046791 2 + TSS region transcription start site region 156463
Tssr156464 19 42051759 to 42051767 8 + TSS region transcription start site region 156464
Tssr156465 19 42051771 to 42051779 8 + TSS region transcription start site region 156465
Tssr156466 19 42051784 to 42051832 48 + TSS region transcription start site region 156466
Tssr156467 19 42051841 to 42051846 5 + TSS region transcription start site region 156467
Tssr156468 19 42052240 to 42052258 18 + TSS region transcription start site region 156468
4933411K16Rik 19 42052248 to 42053627 1379 + protein coding gene RIKEN cDNA 4933411K16 gene
Tssr156469 19 42052259 to 42052275 16 + TSS region transcription start site region 156469
Tssr156470 19 42052283 to 42052284 1 + TSS region transcription start site region 156470
Tssr156471 19 42052743 to 42052760 17 + TSS region transcription start site region 156471
Tssr156472 19 42052821 to 42052833 12 + TSS region transcription start site region 156472
Tssr156473 19 42052950 to 42052957 7 + TSS region transcription start site region 156473
Tssr156474 19 42052985 to 42052996 11 + TSS region transcription start site region 156474
Tssr156475 19 42053040 to 42053049 9 + TSS region transcription start site region 156475
Tssr159336 19 42053069 to 42053077 8 - TSS region transcription start site region 159336
Tssr159337 19 42053086 to 42053089 3 - TSS region transcription start site region 159337
Tssr156476 19 42058006 to 42058008 2 + TSS region transcription start site region 156476
Tssr159338 19 42059452 to 42059461 9 - TSS region transcription start site region 159338
Cpgi10841 19 42059808 to 42059986 178 CpG island CpG island 10841
Tssr156477 19 42068696 to 42068729 33 + TSS region transcription start site region 156477
Morn4 19 42074939 to 42086370 11431 - protein coding gene MORN repeat containing 4
Tssr159339 19 42075464 to 42075493 29 - TSS region transcription start site region 159339
Cpgi10842 19 42086071 to 42086465 394 CpG island CpG island 10842
Tssr159340 19 42086268 to 42086279 11 - TSS region transcription start site region 159340
Tssr159341 19 42086280 to 42086294 14 - TSS region transcription start site region 159341
Tssr159342 19 42086319 to 42086334 15 - TSS region transcription start site region 159342
Tssr159343 19 42086338 to 42086375 37 - TSS region transcription start site region 159343
Tssr159344 19 42089281 to 42089293 12 - TSS region transcription start site region 159344
Cpgi10843 19 42090037 to 42091151 1114 CpG island CpG island 10843
Tssr156478 19 42090422 to 42090502 80 + TSS region transcription start site region 156478
Pi4k2a 19 42090435 to 42122218 31783 + protein coding gene phosphatidylinositol 4-kinase type 2 alpha
Tssr156479 19 42090516 to 42090532 16 + TSS region transcription start site region 156479
Tssr159345 19 42091364 to 42091366 2 - TSS region transcription start site region 159345
Tssr156480 19 42091544 to 42091557 13 + TSS region transcription start site region 156480
Tssr156481 19 42106161 to 42106180 19 + TSS region transcription start site region 156481
Tssr156482 19 42117560 to 42117564 4 + TSS region transcription start site region 156482
Tssr156483 19 42120229 to 42120267 38 + TSS region transcription start site region 156483
Avpi1 19 42123275 to 42128993 5718 - protein coding gene arginine vasopressin-induced 1
Cpgi10844 19 42128365 to 42129477 1112 CpG island CpG island 10844
Tssr159346 19 42128911 to 42128941 30 - TSS region transcription start site region 159346
Tssr159347 19 42128946 to 42128967 21 - TSS region transcription start site region 159347
Tssr159348 19 42128969 to 42128980 11 - TSS region transcription start site region 159348
Tssr159349 19 42128982 to 42129041 59 - TSS region transcription start site region 159349
Tssr159350 19 42129043 to 42129069 26 - TSS region transcription start site region 159350
Tssr159351 19 42135972 to 42136008 36 - TSS region transcription start site region 159351
Tssr159352 19 42142150 to 42142156 6 - TSS region transcription start site region 159352
Cpgi10845 19 42146975 to 42148694 1719 CpG island CpG island 10845
Tssr156484 19 42147373 to 42147388 15 + TSS region transcription start site region 156484
Marveld1 19 42147400 to 42151703 4303 + protein coding gene MARVEL (membrane-associating) domain containing 1
Tssr156485 19 42147413 to 42147426 13 + TSS region transcription start site region 156485
Tssr156486 19 42147432 to 42147454 22 + TSS region transcription start site region 156486
Tssr5518 19 42147466 to 42147471 5 + TSS region transcription start site region 5518
Tssr156487 19 42159628 to 42159635 7 + TSS region transcription start site region 156487
Gm6937 19 42159631 to 42160768 1137 + pseudogene predicted pseudogene 6937
Cpgi10846 19 42170257 to 42171069 812 CpG island CpG island 10846
Tssr156488 19 42170562 to 42170600 38 + TSS region transcription start site region 156488
Zfyve27 19 42170567 to 42194593 24026 + protein coding gene zinc finger, FYVE domain containing 27
Tssr156489 19 42170604 to 42170631 27 + TSS region transcription start site region 156489
Tssr5519 19 42177183 to 42177206 23 + TSS region transcription start site region 5519
Sfrp5 19 42197971 to 42202252 4281 - protein coding gene secreted frizzled-related sequence protein 5
Cpgi10847 19 42201173 to 42202428 1255 CpG island CpG island 10847
Tssr5520 19 42202105 to 42202110 5 - TSS region transcription start site region 5520
Tssr159353 19 42202116 to 42202130 14 - TSS region transcription start site region 159353
Tssr159354 19 42202131 to 42202140 9 - TSS region transcription start site region 159354
Tssr159355 19 42202150 to 42202164 14 - TSS region transcription start site region 159355
D19Mit90 19 42221252 to 42221372 120 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 90
Tssr156490 19 42238613 to 42238624 11 + TSS region transcription start site region 156490
Tssr156491 19 42247544 to 42247586 42 + TSS region transcription start site region 156491
Golga7b 19 42247578 to 42270348 22770 + protein coding gene golgi autoantigen, golgin subfamily a, 7B
Tssr156492 19 42255241 to 42255245 4 + TSS region transcription start site region 156492
Cpgi10848 19 42255449 to 42256420 971 CpG island CpG island 10848
Tssr156493 19 42255704 to 42255761 57 + TSS region transcription start site region 156493
Tssr156494 19 42255814 to 42255867 53 + TSS region transcription start site region 156494
Tssr156495 19 42255872 to 42255889 17 + TSS region transcription start site region 156495
Tssr156496 19 42255890 to 42255903 13 + TSS region transcription start site region 156496
Cpgi10849 19 42268265 to 42268654 389 CpG island CpG island 10849
Tssr156497 19 42268688 to 42268692 4 + TSS region transcription start site region 156497
Gm26339 19 42274964 to 42275062 98 + miRNA gene predicted gene, 26339
Gm34347 19 42276887 to 42314626 37739 + lncRNA gene predicted gene, 34347
Mir3085 19 42280082 to 42280170 88 - miRNA gene microRNA 3085
Crtac1 19 42283037 to 42431783 148746 - protein coding gene cartilage acidic protein 1
Tssr159356 19 42298076 to 42298093 17 - TSS region transcription start site region 159356
Tssr156498 19 42306465 to 42306497 32 + TSS region transcription start site region 156498
Tssr159357 19 42307102 to 42307116 14 - TSS region transcription start site region 159357
Tssr5521 19 42307125 to 42307134 9 - TSS region transcription start site region 5521
Cpgi10850 19 42380636 to 42381173 537 CpG island CpG island 10850
Gm41848 19 42387741 to 42397551 9810 - lncRNA gene predicted gene, 41848
D19Mit11.2 19 42394597 to 42394760 163 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 11.2
D19Mit11.1 19 42394609 to 42394755 146 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 11.1
D19Mit100 19 42400324 to 42400477 153 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 100