Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:41432602-42062606

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131 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D19Mit66 19 41434981 to 41435088 107 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 66
Cpgi10830 19 41442225 to 41442484 259 CpG island CpG island 10830
Gm33951 19 41443382 to 41445082 1700 - lncRNA gene predicted gene, 33951
Gm9788 19 41459813 to 41460718 905 + pseudogene predicted pseudogene 9788
Tssr159309 19 41474927 to 41474933 6 - TSS region transcription start site region 159309
Tssr156426 19 41475929 to 41475933 4 + TSS region transcription start site region 156426
2010100M03Rik 19 41481253 to 41482184 931 unclassified gene RIKEN cDNA 2010100M03 gene
Cpgi10831 19 41482141 to 41483900 1759 CpG island CpG island 10831
Tssr156427 19 41482632 to 41482688 56 + TSS region transcription start site region 156427
Lcor 19 41482645 to 41562246 79601 + protein coding gene ligand dependent nuclear receptor corepressor
Tssr156428 19 41482956 to 41483004 48 + TSS region transcription start site region 156428
Tssr156429 19 41483101 to 41483144 43 + TSS region transcription start site region 156429
Tssr156430 19 41483203 to 41483221 18 + TSS region transcription start site region 156430
Tssr156431 19 41495113 to 41495115 2 + TSS region transcription start site region 156431
Morf4l1b 19 41525252 to 41526961 1709 + protein coding gene mortality factor 4 like 1B
Gm340 19 41582370 to 41586536 4166 + protein coding gene predicted gene 340
Mir8091 19 41588651 to 41588789 138 + miRNA gene microRNA 8091
AI606181 19 41593363 to 41596158 2795 + protein coding gene expressed sequence AI606181
Slit1 19 41600257 to 41743665 143408 - protein coding gene slit guidance ligand 1
Cpgi10832 19 41600364 to 41600692 328 CpG island CpG island 10832
Tssr159310 19 41665978 to 41665979 1 - TSS region transcription start site region 159310
Tssr159311 19 41665988 to 41666017 29 - TSS region transcription start site region 159311
Tssr159312 19 41666023 to 41666029 6 - TSS region transcription start site region 159312
Gm34116 19 41691154 to 41702436 11282 + lncRNA gene predicted gene, 34116
Tssr156432 19 41691352 to 41691369 17 + TSS region transcription start site region 156432
Cpgi10833 19 41742902 to 41743982 1080 CpG island CpG island 10833
Tssr159313 19 41743644 to 41743662 18 - TSS region transcription start site region 159313
Tssr159314 19 41743665 to 41743706 41 - TSS region transcription start site region 159314
Gm22601 19 41744804 to 41745053 249 + unclassified non-coding RNA gene predicted gene, 22601
Gm19424 19 41746961 to 41750097 3136 + lncRNA gene predicted gene, 19424
Tssr159315 19 41747575 to 41747584 9 - TSS region transcription start site region 159315
Tssr159316 19 41747602 to 41747606 4 - TSS region transcription start site region 159316
Arhgap19 19 41766588 to 41802084 35496 - protein coding gene Rho GTPase activating protein 19
Tssr159317 19 41774107 to 41774167 60 - TSS region transcription start site region 159317
Tssr159318 19 41774182 to 41774195 13 - TSS region transcription start site region 159318
Tssr159319 19 41774564 to 41774591 27 - TSS region transcription start site region 159319
Tssr159320 19 41794994 to 41795032 38 - TSS region transcription start site region 159320
Cpgi10834 19 41801587 to 41802293 706 CpG island CpG island 10834
Tssr159321 19 41802028 to 41802060 32 - TSS region transcription start site region 159321
Gm41847 19 41807949 to 41819642 11693 - lncRNA gene predicted gene, 41847
Cpgi10835 19 41829663 to 41831323 1660 CpG island CpG island 10835
Frat1 19 41829970 to 41832583 2613 + protein coding gene frequently rearranged in advanced T cell lymphomas
Tssr156433 19 41829994 to 41830026 32 + TSS region transcription start site region 156433
Tssr156434 19 41830027 to 41830049 22 + TSS region transcription start site region 156434
Tssr156435 19 41831272 to 41831276 4 + TSS region transcription start site region 156435
Frat2 19 41845972 to 41848132 2160 - protein coding gene frequently rearranged in advanced T cell lymphomas 2
Cpgi10836 19 41846832 to 41848585 1753 CpG island CpG island 10836
Tssr159322 19 41848055 to 41848066 11 - TSS region transcription start site region 159322
Tssr159323 19 41848076 to 41848111 35 - TSS region transcription start site region 159323
Tssr159324 19 41848233 to 41848246 13 - TSS region transcription start site region 159324
Tssr159325 19 41848290 to 41848310 20 - TSS region transcription start site region 159325
Tssr156436 19 41848512 to 41848515 3 + TSS region transcription start site region 156436
Tssr156437 19 41848788 to 41848803 15 + TSS region transcription start site region 156437
Rrp12 19 41862852 to 41896153 33301 - protein coding gene ribosomal RNA processing 12 homolog (S. cerevisiae)
Cpgi10837 19 41895622 to 41896610 988 CpG island CpG island 10837
Tssr159326 19 41896132 to 41896155 23 - TSS region transcription start site region 159326
Tssr159327 19 41896160 to 41896207 47 - TSS region transcription start site region 159327
Tssr156438 19 41896291 to 41896312 21 + TSS region transcription start site region 156438
Tssr5515 19 41900806 to 41900809 3 - TSS region transcription start site region 5515
Gm46644 19 41900999 to 41903231 2232 + pseudogene predicted gene, 46644
Cpgi10838 19 41911540 to 41912716 1176 CpG island CpG island 10838
Tssr156439 19 41911697 to 41911705 8 + TSS region transcription start site region 156439
Tssr159328 19 41911751 to 41911779 28 - TSS region transcription start site region 159328
Tssr159329 19 41911811 to 41911820 9 - TSS region transcription start site region 159329
Tssr156440 19 41911851 to 41911874 23 + TSS region transcription start site region 156440
Pgam1 19 41911871 to 41918664 6793 + protein coding gene phosphoglycerate mutase 1
Tssr156441 19 41911875 to 41911895 20 + TSS region transcription start site region 156441
Tssr156442 19 41911896 to 41911908 12 + TSS region transcription start site region 156442
Tssr156443 19 41911920 to 41911934 14 + TSS region transcription start site region 156443
Tssr156444 19 41911945 to 41911966 21 + TSS region transcription start site region 156444
Tssr156445 19 41912011 to 41912036 25 + TSS region transcription start site region 156445
Tssr159330 19 41916908 to 41916909 1 - TSS region transcription start site region 159330
Tssr159331 19 41917024 to 41917030 6 - TSS region transcription start site region 159331
Tssr156446 19 41917157 to 41917161 4 + TSS region transcription start site region 156446
Tssr156447 19 41917773 to 41917805 32 + TSS region transcription start site region 156447
B130024M06Rik 19 41919649 to 41922417 2768 unclassified non-coding RNA gene RIKEN cDNA B130024M06 gene
Exosc1 19 41922980 to 41933314 10334 - protein coding gene exosome component 1
Cpgi10839 19 41932603 to 41933863 1260 CpG island CpG island 10839
Tssr156448 19 41932827 to 41932844 17 + TSS region transcription start site region 156448
Tssr159332 19 41933276 to 41933319 43 - TSS region transcription start site region 159332
Tssr156449 19 41933464 to 41933540 76 + TSS region transcription start site region 156449
Zdhhc16 19 41933480 to 41944104 10624 + protein coding gene zinc finger, DHHC domain containing 16
Tssr156450 19 41933908 to 41933912 4 + TSS region transcription start site region 156450
Mms19 19 41943707 to 41981165 37458 - protein coding gene MMS19 cytosolic iron-sulfur assembly component
Tssr159333 19 41964601 to 41964604 3 - TSS region transcription start site region 159333
Tssr159334 19 41966658 to 41966661 3 - TSS region transcription start site region 159334
B130065D12Rik 19 41972104 to 41974521 2417 unclassified gene RIKEN cDNA B130065D12 gene
Gm23113 19 41975188 to 41975286 98 + snRNA gene predicted gene, 23113
Cpgi10840 19 41980502 to 41982781 2279 CpG island CpG island 10840
Tssr5516 19 41981113 to 41981118 5 - TSS region transcription start site region 5516
Tssr159335 19 41981119 to 41981150 31 - TSS region transcription start site region 159335
Tssr156451 19 41981227 to 41981246 19 + TSS region transcription start site region 156451
Tssr156452 19 41981255 to 41981283 28 + TSS region transcription start site region 156452
Tssr156453 19 41981323 to 41981349 26 + TSS region transcription start site region 156453
Tssr156454 19 41981470 to 41981481 11 + TSS region transcription start site region 156454
Tssr156455 19 41981623 to 41981638 15 + TSS region transcription start site region 156455
Tssr156456 19 41981661 to 41981706 45 + TSS region transcription start site region 156456
Tssr156457 19 41981709 to 41981778 69 + TSS region transcription start site region 156457
Ubtd1 19 41981763 to 42034641 52878 + protein coding gene ubiquitin domain containing 1
Tssr5517 19 41981787 to 41981798 11 + TSS region transcription start site region 5517
E130107B13Rik 19 41986562 to 41990399 3837 unclassified gene RIKEN cDNA E130107B13 gene
Ebm1 19 42000000 to 42000000 0 QTL Epidermolysis Bullosa modifier 1
D19Dcr29 19 42001344 to 42001439 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 29
Tssr156458 19 42019390 to 42019411 21 + TSS region transcription start site region 156458
D19Dcr30 19 42020274 to 42020369 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 30
Tssr156459 19 42022199 to 42022217 18 + TSS region transcription start site region 156459
Tssr156460 19 42036025 to 42036032 7 + TSS region transcription start site region 156460
Ankrd2 19 42036038 to 42045110 9072 + protein coding gene ankyrin repeat domain 2 (stretch responsive muscle)
D19Dcr31 19 42036420 to 42036519 99 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 31
Tssr156461 19 42041629 to 42041643 14 + TSS region transcription start site region 156461
Hoga1 19 42045851 to 42070939 25088 + protein coding gene 4-hydroxy-2-oxoglutarate aldolase 1
Tssr156462 19 42045858 to 42045897 39 + TSS region transcription start site region 156462
Tssr156463 19 42046789 to 42046791 2 + TSS region transcription start site region 156463
Tssr156464 19 42051759 to 42051767 8 + TSS region transcription start site region 156464
Tssr156465 19 42051771 to 42051779 8 + TSS region transcription start site region 156465
Tssr156466 19 42051784 to 42051832 48 + TSS region transcription start site region 156466
Tssr156467 19 42051841 to 42051846 5 + TSS region transcription start site region 156467
Tssr156468 19 42052240 to 42052258 18 + TSS region transcription start site region 156468
4933411K16Rik 19 42052248 to 42053627 1379 + protein coding gene RIKEN cDNA 4933411K16 gene
Tssr156469 19 42052259 to 42052275 16 + TSS region transcription start site region 156469
Tssr156470 19 42052283 to 42052284 1 + TSS region transcription start site region 156470
Tssr156471 19 42052743 to 42052760 17 + TSS region transcription start site region 156471
Tssr156472 19 42052821 to 42052833 12 + TSS region transcription start site region 156472
Tssr156473 19 42052950 to 42052957 7 + TSS region transcription start site region 156473
Tssr156474 19 42052985 to 42052996 11 + TSS region transcription start site region 156474
Tssr156475 19 42053040 to 42053049 9 + TSS region transcription start site region 156475
Tssr159336 19 42053069 to 42053077 8 - TSS region transcription start site region 159336
Tssr159337 19 42053086 to 42053089 3 - TSS region transcription start site region 159337
Tssr156476 19 42058006 to 42058008 2 + TSS region transcription start site region 156476
Tssr159338 19 42059452 to 42059461 9 - TSS region transcription start site region 159338
Cpgi10841 19 42059808 to 42059986 178 CpG island CpG island 10841