Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:40838420-41302113

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95 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ccnj 19 40831279 to 40848572 17293 + protein coding gene cyclin J
Tssr156403 19 40840721 to 40840758 37 + TSS region transcription start site region 156403
Tssr156404 19 40846560 to 40846563 3 + TSS region transcription start site region 156404
E030044B06Rik 19 40868386 to 40874071 5685 + lincRNA gene RIKEN cDNA E030044B06 gene
Cpgi10821 19 40873003 to 40873704 701 CpG island CpG island 10821
Cpgi10822 19 40894070 to 40895574 1504 CpG island CpG island 10822
Tssr156405 19 40894152 to 40894163 11 + TSS region transcription start site region 156405
Tssr159223 19 40894603 to 40894641 38 - TSS region transcription start site region 159223
Tssr156406 19 40894692 to 40894736 44 + TSS region transcription start site region 156406
Mir8092 19 40894703 to 40894789 86 + miRNA gene microRNA 8092
Zfp518a 19 40894705 to 40917947 23242 + protein coding gene zinc finger protein 518A
Tssr156407 19 40908665 to 40908673 8 + TSS region transcription start site region 156407
Blnk 19 40928927 to 40994535 65608 - protein coding gene B cell linker
D19Mit121 19 40938133 to 40938256 123 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 121
Tssr156408 19 40940213 to 40940230 17 + TSS region transcription start site region 156408
Tssr159224 19 40940217 to 40940229 12 - TSS region transcription start site region 159224
Tssr156409 19 40945481 to 40945491 10 + TSS region transcription start site region 156409
Tssr159225 19 40953333 to 40953354 21 - TSS region transcription start site region 159225
Tssr159226 19 40954023 to 40954033 10 - TSS region transcription start site region 159226
Tssr159227 19 40955562 to 40955591 29 - TSS region transcription start site region 159227
Tssr159228 19 40955604 to 40955627 23 - TSS region transcription start site region 159228
Tssr159229 19 40959725 to 40959742 17 - TSS region transcription start site region 159229
Tssr159230 19 40959750 to 40959762 12 - TSS region transcription start site region 159230
Cpgi10823 19 40962274 to 40962593 319 CpG island CpG island 10823
Tssr156410 19 40965764 to 40965770 6 + TSS region transcription start site region 156410
Tssr159231 19 40977076 to 40977088 12 - TSS region transcription start site region 159231
Tssr156411 19 40993196 to 40993210 14 + TSS region transcription start site region 156411
Tssr159232 19 40994133 to 40994144 11 - TSS region transcription start site region 159232
Tssr159233 19 40994155 to 40994181 26 - TSS region transcription start site region 159233
Tssr159234 19 40994189 to 40994200 11 - TSS region transcription start site region 159234
Tssr159235 19 40994211 to 40994227 16 - TSS region transcription start site region 159235
Tssr159236 19 40994254 to 40994272 18 - TSS region transcription start site region 159236
Tssr159237 19 40994278 to 40994289 11 - TSS region transcription start site region 159237
Tssr159238 19 40996121 to 40996136 15 - TSS region transcription start site region 159238
Tssr159239 19 41000486 to 41000487 1 - TSS region transcription start site region 159239
C330026H20Rik 19 41004815 to 41014643 9828 - lncRNA gene RIKEN cDNA C330026H20 gene
Tssr159240 19 41011676 to 41011680 4 - TSS region transcription start site region 159240
Gm4269 19 41017683 to 41020295 2612 + pseudogene predicted gene 4269
Tssr159241 19 41020668 to 41020674 6 - TSS region transcription start site region 159241
Dntt 19 41029275 to 41059523 30248 + protein coding gene deoxynucleotidyltransferase, terminal
Tssr156412 19 41029379 to 41029398 19 + TSS region transcription start site region 156412
Tssr159242 19 41031122 to 41031136 14 - TSS region transcription start site region 159242
Tssr159243 19 41031152 to 41031163 11 - TSS region transcription start site region 159243
Tssr159244 19 41031173 to 41031180 7 - TSS region transcription start site region 159244
Tssr159245 19 41031182 to 41031193 11 - TSS region transcription start site region 159245
Tssr5510 19 41031211 to 41031216 5 - TSS region transcription start site region 5510
Tssr159246 19 41032045 to 41032056 11 - TSS region transcription start site region 159246
Tssr159247 19 41032059 to 41032068 9 - TSS region transcription start site region 159247
Tssr156413 19 41044873 to 41044882 9 + TSS region transcription start site region 156413
Tssr156414 19 41050407 to 41050421 14 + TSS region transcription start site region 156414
Opalin 19 41063420 to 41077113 13693 - protein coding gene oligodendrocytic myelin paranodal and inner loop protein
Tssr159248 19 41077063 to 41077078 15 - TSS region transcription start site region 159248
Tssr159249 19 41077106 to 41077118 12 - TSS region transcription start site region 159249
Tll2 19 41083981 to 41206774 122793 - protein coding gene tolloid-like 2
Cpgi10824 19 41088512 to 41088775 263 CpG island CpG island 10824
Cpgi10825 19 41206031 to 41207350 1319 CpG island CpG island 10825
Tssr159250 19 41206860 to 41206898 38 - TSS region transcription start site region 159250
Tm9sf3 19 41210842 to 41264004 53162 - protein coding gene transmembrane 9 superfamily member 3
Tssr159251 19 41214354 to 41214368 14 - TSS region transcription start site region 159251
Tssr159252 19 41214535 to 41214559 24 - TSS region transcription start site region 159252
Tssr159253 19 41217415 to 41217428 13 - TSS region transcription start site region 159253
Tssr159254 19 41232427 to 41232449 22 - TSS region transcription start site region 159254
Gm46651 19 41259566 to 41263709 4143 - lncRNA gene predicted gene, 46651
Tssr159255 19 41262523 to 41262527 4 - TSS region transcription start site region 159255
Cpgi10826 19 41263102 to 41264420 1318 CpG island CpG island 10826
Tssr156415 19 41263343 to 41263378 35 + TSS region transcription start site region 156415
Tssr5511 19 41263407 to 41263423 16 + TSS region transcription start site region 5511
Tssr156416 19 41263772 to 41263781 9 + TSS region transcription start site region 156416
Tssr159256 19 41263917 to 41263922 5 - TSS region transcription start site region 159256
Tssr159257 19 41263931 to 41264008 77 - TSS region transcription start site region 159257
Tssr159258 19 41264019 to 41264054 35 - TSS region transcription start site region 159258
1700008F19Rik 19 41264111 to 41265029 918 unclassified gene RIKEN cDNA 1700008F19 gene
Tssr156417 19 41264115 to 41264182 67 + TSS region transcription start site region 156417
Tssr159259 19 41264286 to 41264289 3 - TSS region transcription start site region 159259
Tssr159260 19 41264299 to 41264304 5 - TSS region transcription start site region 159260
Tssr159261 19 41264313 to 41264323 10 - TSS region transcription start site region 159261
Tssr159262 19 41264325 to 41264338 13 - TSS region transcription start site region 159262
Tssr159263 19 41264345 to 41264363 18 - TSS region transcription start site region 159263
Tssr159264 19 41273157 to 41273171 14 - TSS region transcription start site region 159264
Tssr159265 19 41273235 to 41273251 16 - TSS region transcription start site region 159265
Tssr159266 19 41273265 to 41273278 13 - TSS region transcription start site region 159266
Tssr156418 19 41273595 to 41273630 35 + TSS region transcription start site region 156418
Tssr159267 19 41273650 to 41273662 12 - TSS region transcription start site region 159267
Tssr159268 19 41273721 to 41273738 17 - TSS region transcription start site region 159268
Tssr159269 19 41273755 to 41273768 13 - TSS region transcription start site region 159269
Tssr159270 19 41273782 to 41273798 16 - TSS region transcription start site region 159270
Tssr159271 19 41273871 to 41273882 11 - TSS region transcription start site region 159271
Pik3ap1 19 41274218 to 41385070 110852 - protein coding gene phosphoinositide-3-kinase adaptor protein 1
Tssr159272 19 41274318 to 41274344 26 - TSS region transcription start site region 159272
Tssr159273 19 41275947 to 41275971 24 - TSS region transcription start site region 159273
D19Mit119 19 41276528 to 41276787 259 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 119
Tssr159274 19 41276808 to 41276852 44 - TSS region transcription start site region 159274
Tssr159275 19 41276890 to 41276915 25 - TSS region transcription start site region 159275
Tssr159276 19 41276947 to 41276968 21 - TSS region transcription start site region 159276
Tssr159277 19 41277021 to 41277061 40 - TSS region transcription start site region 159277