Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:40806528-41746787

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180 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cc2d2b 19 40754741 to 40829057 74316 + protein coding gene coiled-coil and C2 domain containing 2B
Gm33482 19 40816765 to 40818268 1503 - lncRNA gene predicted gene, 33482
Tssr159220 19 40821456 to 40821463 7 - TSS region transcription start site region 159220
Tssr159221 19 40821471 to 40821478 7 - TSS region transcription start site region 159221
Tssr159222 19 40821492 to 40821512 20 - TSS region transcription start site region 159222
Tssr156398 19 40829091 to 40829092 1 + TSS region transcription start site region 156398
Gm9099 19 40830521 to 40831854 1333 unclassified gene predicted gene 9099
Tssr156399 19 40830564 to 40830594 30 + TSS region transcription start site region 156399
Cpgi10820 19 40830668 to 40832325 1657 CpG island CpG island 10820
Tssr156400 19 40831248 to 40831292 44 + TSS region transcription start site region 156400
Ccnj 19 40831279 to 40848572 17293 + protein coding gene cyclin J
Tssr156401 19 40831296 to 40831313 17 + TSS region transcription start site region 156401
Tssr156402 19 40831964 to 40832018 54 + TSS region transcription start site region 156402
Tssr156403 19 40840721 to 40840758 37 + TSS region transcription start site region 156403
Tssr156404 19 40846560 to 40846563 3 + TSS region transcription start site region 156404
E030044B06Rik 19 40868386 to 40874071 5685 + lincRNA gene RIKEN cDNA E030044B06 gene
Cpgi10821 19 40873003 to 40873704 701 CpG island CpG island 10821
Cpgi10822 19 40894070 to 40895574 1504 CpG island CpG island 10822
Tssr156405 19 40894152 to 40894163 11 + TSS region transcription start site region 156405
Tssr159223 19 40894603 to 40894641 38 - TSS region transcription start site region 159223
Tssr156406 19 40894692 to 40894736 44 + TSS region transcription start site region 156406
Mir8092 19 40894703 to 40894789 86 + miRNA gene microRNA 8092
Zfp518a 19 40894705 to 40917947 23242 + protein coding gene zinc finger protein 518A
Tssr156407 19 40908665 to 40908673 8 + TSS region transcription start site region 156407
Blnk 19 40928927 to 40994535 65608 - protein coding gene B cell linker
D19Mit121 19 40938133 to 40938256 123 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 121
Tssr156408 19 40940213 to 40940230 17 + TSS region transcription start site region 156408
Tssr159224 19 40940217 to 40940229 12 - TSS region transcription start site region 159224
Tssr156409 19 40945481 to 40945491 10 + TSS region transcription start site region 156409
Tssr159225 19 40953333 to 40953354 21 - TSS region transcription start site region 159225
Tssr159226 19 40954023 to 40954033 10 - TSS region transcription start site region 159226
Tssr159227 19 40955562 to 40955591 29 - TSS region transcription start site region 159227
Tssr159228 19 40955604 to 40955627 23 - TSS region transcription start site region 159228
Tssr159229 19 40959725 to 40959742 17 - TSS region transcription start site region 159229
Tssr159230 19 40959750 to 40959762 12 - TSS region transcription start site region 159230
Cpgi10823 19 40962274 to 40962593 319 CpG island CpG island 10823
Tssr156410 19 40965764 to 40965770 6 + TSS region transcription start site region 156410
Tssr159231 19 40977076 to 40977088 12 - TSS region transcription start site region 159231
Tssr156411 19 40993196 to 40993210 14 + TSS region transcription start site region 156411
Tssr159232 19 40994133 to 40994144 11 - TSS region transcription start site region 159232
Tssr159233 19 40994155 to 40994181 26 - TSS region transcription start site region 159233
Tssr159234 19 40994189 to 40994200 11 - TSS region transcription start site region 159234
Tssr159235 19 40994211 to 40994227 16 - TSS region transcription start site region 159235
Tssr159236 19 40994254 to 40994272 18 - TSS region transcription start site region 159236
Tssr159237 19 40994278 to 40994289 11 - TSS region transcription start site region 159237
Tssr159238 19 40996121 to 40996136 15 - TSS region transcription start site region 159238
Tssr159239 19 41000486 to 41000487 1 - TSS region transcription start site region 159239
C330026H20Rik 19 41004815 to 41014643 9828 - lncRNA gene RIKEN cDNA C330026H20 gene
Tssr159240 19 41011676 to 41011680 4 - TSS region transcription start site region 159240
Gm4269 19 41017683 to 41020295 2612 + pseudogene predicted gene 4269
Tssr159241 19 41020668 to 41020674 6 - TSS region transcription start site region 159241
Dntt 19 41029275 to 41059523 30248 + protein coding gene deoxynucleotidyltransferase, terminal
Tssr156412 19 41029379 to 41029398 19 + TSS region transcription start site region 156412
Tssr159242 19 41031122 to 41031136 14 - TSS region transcription start site region 159242
Tssr159243 19 41031152 to 41031163 11 - TSS region transcription start site region 159243
Tssr159244 19 41031173 to 41031180 7 - TSS region transcription start site region 159244
Tssr159245 19 41031182 to 41031193 11 - TSS region transcription start site region 159245
Tssr5510 19 41031211 to 41031216 5 - TSS region transcription start site region 5510
Tssr159246 19 41032045 to 41032056 11 - TSS region transcription start site region 159246
Tssr159247 19 41032059 to 41032068 9 - TSS region transcription start site region 159247
Tssr156413 19 41044873 to 41044882 9 + TSS region transcription start site region 156413
Tssr156414 19 41050407 to 41050421 14 + TSS region transcription start site region 156414
Opalin 19 41063420 to 41077113 13693 - protein coding gene oligodendrocytic myelin paranodal and inner loop protein
Tssr159248 19 41077063 to 41077078 15 - TSS region transcription start site region 159248
Tssr159249 19 41077106 to 41077118 12 - TSS region transcription start site region 159249
Tll2 19 41083981 to 41206774 122793 - protein coding gene tolloid-like 2
Cpgi10824 19 41088512 to 41088775 263 CpG island CpG island 10824
Cpgi10825 19 41206031 to 41207350 1319 CpG island CpG island 10825
Tssr159250 19 41206860 to 41206898 38 - TSS region transcription start site region 159250
Tm9sf3 19 41210842 to 41264004 53162 - protein coding gene transmembrane 9 superfamily member 3
Tssr159251 19 41214354 to 41214368 14 - TSS region transcription start site region 159251
Tssr159252 19 41214535 to 41214559 24 - TSS region transcription start site region 159252
Tssr159253 19 41217415 to 41217428 13 - TSS region transcription start site region 159253
Tssr159254 19 41232427 to 41232449 22 - TSS region transcription start site region 159254
Gm46651 19 41259566 to 41263709 4143 - lncRNA gene predicted gene, 46651
Tssr159255 19 41262523 to 41262527 4 - TSS region transcription start site region 159255
Cpgi10826 19 41263102 to 41264420 1318 CpG island CpG island 10826
Tssr156415 19 41263343 to 41263378 35 + TSS region transcription start site region 156415
Tssr5511 19 41263407 to 41263423 16 + TSS region transcription start site region 5511
Tssr156416 19 41263772 to 41263781 9 + TSS region transcription start site region 156416
Tssr159256 19 41263917 to 41263922 5 - TSS region transcription start site region 159256
Tssr159257 19 41263931 to 41264008 77 - TSS region transcription start site region 159257
Tssr159258 19 41264019 to 41264054 35 - TSS region transcription start site region 159258
1700008F19Rik 19 41264111 to 41265029 918 unclassified gene RIKEN cDNA 1700008F19 gene
Tssr156417 19 41264115 to 41264182 67 + TSS region transcription start site region 156417
Tssr159259 19 41264286 to 41264289 3 - TSS region transcription start site region 159259
Tssr159260 19 41264299 to 41264304 5 - TSS region transcription start site region 159260
Tssr159261 19 41264313 to 41264323 10 - TSS region transcription start site region 159261
Tssr159262 19 41264325 to 41264338 13 - TSS region transcription start site region 159262
Tssr159263 19 41264345 to 41264363 18 - TSS region transcription start site region 159263
Tssr159264 19 41273157 to 41273171 14 - TSS region transcription start site region 159264
Tssr159265 19 41273235 to 41273251 16 - TSS region transcription start site region 159265
Tssr159266 19 41273265 to 41273278 13 - TSS region transcription start site region 159266
Tssr156418 19 41273595 to 41273630 35 + TSS region transcription start site region 156418
Tssr159267 19 41273650 to 41273662 12 - TSS region transcription start site region 159267
Tssr159268 19 41273721 to 41273738 17 - TSS region transcription start site region 159268
Tssr159269 19 41273755 to 41273768 13 - TSS region transcription start site region 159269
Tssr159270 19 41273782 to 41273798 16 - TSS region transcription start site region 159270
Tssr159271 19 41273871 to 41273882 11 - TSS region transcription start site region 159271
Pik3ap1 19 41274218 to 41385070 110852 - protein coding gene phosphoinositide-3-kinase adaptor protein 1
Tssr159272 19 41274318 to 41274344 26 - TSS region transcription start site region 159272
Tssr159273 19 41275947 to 41275971 24 - TSS region transcription start site region 159273
D19Mit119 19 41276528 to 41276787 259 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 119
Tssr159274 19 41276808 to 41276852 44 - TSS region transcription start site region 159274
Tssr159275 19 41276890 to 41276915 25 - TSS region transcription start site region 159275
Tssr159276 19 41276947 to 41276968 21 - TSS region transcription start site region 159276
Tssr159277 19 41277021 to 41277061 40 - TSS region transcription start site region 159277
Tssr159278 19 41302456 to 41302484 28 - TSS region transcription start site region 159278
Tssr159279 19 41305912 to 41305943 31 - TSS region transcription start site region 159279
Tssr159280 19 41305980 to 41306008 28 - TSS region transcription start site region 159280
Tssr159281 19 41308472 to 41308493 21 - TSS region transcription start site region 159281
Tssr159282 19 41310327 to 41310332 5 - TSS region transcription start site region 159282
Tssr159283 19 41319654 to 41319668 14 - TSS region transcription start site region 159283
Tssr159284 19 41323932 to 41323948 16 - TSS region transcription start site region 159284
Tssr159285 19 41324334 to 41324346 12 - TSS region transcription start site region 159285
Tssr159286 19 41324664 to 41324677 13 - TSS region transcription start site region 159286
Tssr156419 19 41329110 to 41329123 13 + TSS region transcription start site region 156419
Tssr159287 19 41329992 to 41330014 22 - TSS region transcription start site region 159287
Tssr159288 19 41331626 to 41331643 17 - TSS region transcription start site region 159288
Tssr159289 19 41332273 to 41332287 14 - TSS region transcription start site region 159289
Tssr159290 19 41332320 to 41332353 33 - TSS region transcription start site region 159290
Tssr159291 19 41332358 to 41332376 18 - TSS region transcription start site region 159291
Tssr159292 19 41332434 to 41332458 24 - TSS region transcription start site region 159292
Tssr159293 19 41332679 to 41332724 45 - TSS region transcription start site region 159293
Tssr159294 19 41333029 to 41333040 11 - TSS region transcription start site region 159294
Tssr159295 19 41333050 to 41333094 44 - TSS region transcription start site region 159295
Tssr159296 19 41333943 to 41333964 21 - TSS region transcription start site region 159296
Tssr156420 19 41336986 to 41336997 11 + TSS region transcription start site region 156420
Cpgi10827 19 41339223 to 41339540 317 CpG island CpG island 10827
Tssr5512 19 41339477 to 41339496 19 + TSS region transcription start site region 5512
Tssr5513 19 41339501 to 41339516 15 + TSS region transcription start site region 5513
Tssr159297 19 41339534 to 41339580 46 - TSS region transcription start site region 159297
Tssr156421 19 41339681 to 41339716 35 + TSS region transcription start site region 156421
Tssr156422 19 41344905 to 41344918 13 + TSS region transcription start site region 156422
Tssr156423 19 41344932 to 41344947 15 + TSS region transcription start site region 156423
Tssr156424 19 41345223 to 41345231 8 + TSS region transcription start site region 156424
Tssr159298 19 41358615 to 41358620 5 - TSS region transcription start site region 159298
Tssr159299 19 41359154 to 41359194 40 - TSS region transcription start site region 159299
Tssr159300 19 41363635 to 41363653 18 - TSS region transcription start site region 159300
Tssr159301 19 41363841 to 41363852 11 - TSS region transcription start site region 159301
Tssr159302 19 41363918 to 41363935 17 - TSS region transcription start site region 159302
Tssr159303 19 41363940 to 41363957 17 - TSS region transcription start site region 159303
Tssr159304 19 41370207 to 41370232 25 - TSS region transcription start site region 159304
Tssr159305 19 41370248 to 41370259 11 - TSS region transcription start site region 159305
Tssr159306 19 41371907 to 41371922 15 - TSS region transcription start site region 159306
Cpgi10828 19 41375913 to 41376271 358 CpG island CpG island 10828
Tssr156425 19 41382983 to 41382995 12 + TSS region transcription start site region 156425
Cpgi10829 19 41384730 to 41385616 886 CpG island CpG island 10829
Tssr159307 19 41385075 to 41385086 11 - TSS region transcription start site region 159307
Tssr159308 19 41385089 to 41385109 20 - TSS region transcription start site region 159308
Tssr5514 19 41389017 to 41389021 4 - TSS region transcription start site region 5514
D19Mit66 19 41434981 to 41435088 107 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 66
Cpgi10830 19 41442225 to 41442484 259 CpG island CpG island 10830
Gm33951 19 41443382 to 41445082 1700 - lncRNA gene predicted gene, 33951
Gm9788 19 41459813 to 41460718 905 + pseudogene predicted pseudogene 9788
Tssr159309 19 41474927 to 41474933 6 - TSS region transcription start site region 159309
Tssr156426 19 41475929 to 41475933 4 + TSS region transcription start site region 156426
2010100M03Rik 19 41481253 to 41482184 931 unclassified gene RIKEN cDNA 2010100M03 gene
Cpgi10831 19 41482141 to 41483900 1759 CpG island CpG island 10831
Tssr156427 19 41482632 to 41482688 56 + TSS region transcription start site region 156427
Lcor 19 41482645 to 41562246 79601 + protein coding gene ligand dependent nuclear receptor corepressor
Tssr156428 19 41482956 to 41483004 48 + TSS region transcription start site region 156428
Tssr156429 19 41483101 to 41483144 43 + TSS region transcription start site region 156429
Tssr156430 19 41483203 to 41483221 18 + TSS region transcription start site region 156430
Tssr156431 19 41495113 to 41495115 2 + TSS region transcription start site region 156431
Morf4l1b 19 41525252 to 41526961 1709 + protein coding gene mortality factor 4 like 1B
Gm340 19 41582370 to 41586536 4166 + protein coding gene predicted gene 340
Mir8091 19 41588651 to 41588789 138 + miRNA gene microRNA 8091
AI606181 19 41593363 to 41596158 2795 + protein coding gene expressed sequence AI606181
Slit1 19 41600257 to 41743665 143408 - protein coding gene slit guidance ligand 1
Cpgi10832 19 41600364 to 41600692 328 CpG island CpG island 10832
Tssr159310 19 41665978 to 41665979 1 - TSS region transcription start site region 159310
Tssr159311 19 41665988 to 41666017 29 - TSS region transcription start site region 159311
Tssr159312 19 41666023 to 41666029 6 - TSS region transcription start site region 159312
Gm34116 19 41691154 to 41702436 11282 + lncRNA gene predicted gene, 34116
Tssr156432 19 41691352 to 41691369 17 + TSS region transcription start site region 156432
Cpgi10833 19 41742902 to 41743982 1080 CpG island CpG island 10833
Tssr159313 19 41743644 to 41743662 18 - TSS region transcription start site region 159313
Tssr159314 19 41743665 to 41743706 41 - TSS region transcription start site region 159314
Gm22601 19 41744804 to 41745053 249 + unclassified non-coding RNA gene predicted gene, 22601