Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:40056636-40486698

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75 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Cyp2c54 19 40037941 to 40073811 35870 - protein coding gene cytochrome P450, family 2, subfamily c, polypeptide 54
Tssr159146 19 40073731 to 40073770 39 - TSS region transcription start site region 159146
Tssr156360 19 40089626 to 40089636 10 + TSS region transcription start site region 156360
Tssr156361 19 40089640 to 40089656 16 + TSS region transcription start site region 156361
Cyp2c50 19 40089688 to 40113950 24262 + protein coding gene cytochrome P450, family 2, subfamily c, polypeptide 50
Tssr156362 19 40089699 to 40089723 24 + TSS region transcription start site region 156362
Tssr156363 19 40111276 to 40111312 36 + TSS region transcription start site region 156363
Tssr156364 19 40113434 to 40113477 43 + TSS region transcription start site region 156364
Tssr156365 19 40113664 to 40113676 12 + TSS region transcription start site region 156365
Tssr156366 19 40119747 to 40119765 18 + TSS region transcription start site region 156366
Tssr156367 19 40119786 to 40119821 35 + TSS region transcription start site region 156367
Cyp2c70 19 40153361 to 40187286 33925 - protein coding gene cytochrome P450, family 2, subfamily c, polypeptide 70
Tssr159147 19 40156837 to 40156865 28 - TSS region transcription start site region 159147
Tssr159148 19 40157896 to 40157935 39 - TSS region transcription start site region 159148
Tssr159149 19 40159468 to 40159472 4 - TSS region transcription start site region 159149
Tssr159150 19 40163114 to 40163118 4 - TSS region transcription start site region 159150
Tssr159151 19 40166977 to 40166981 4 - TSS region transcription start site region 159151
Tssr159152 19 40173672 to 40173682 10 - TSS region transcription start site region 159152
Tssr159153 19 40180393 to 40180405 12 - TSS region transcription start site region 159153
Tssr159154 19 40180456 to 40180474 18 - TSS region transcription start site region 159154
Tssr159155 19 40183560 to 40183577 17 - TSS region transcription start site region 159155
Tssr5504 19 40187201 to 40187213 12 - TSS region transcription start site region 5504
Tssr159156 19 40187277 to 40187294 17 - TSS region transcription start site region 159156
Gm5827 19 40189990 to 40194415 4425 + pseudogene predicted gene 5827
Tssr156368 19 40191022 to 40191032 10 + TSS region transcription start site region 156368
Gm16470 19 40212382 to 40213379 997 + pseudogene predicted pseudogene 16470
Pdlim1 19 40222239 to 40271616 49377 - protein coding gene PDZ and LIM domain 1 (elfin)
Tssr159157 19 40231195 to 40231211 16 - TSS region transcription start site region 159157
Cpgi10812 19 40270394 to 40271948 1554 CpG island CpG island 10812
Tssr159158 19 40271506 to 40271577 71 - TSS region transcription start site region 159158
Tssr159159 19 40271636 to 40271698 62 - TSS region transcription start site region 159159
Gm41845 19 40271701 to 40274454 2753 + lncRNA gene predicted gene, 41845
Tssr159160 19 40271772 to 40271794 22 - TSS region transcription start site region 159160
Tssr159161 19 40271813 to 40271822 9 - TSS region transcription start site region 159161
Tssr159162 19 40271844 to 40271865 21 - TSS region transcription start site region 159162
Tssr159163 19 40271874 to 40271888 14 - TSS region transcription start site region 159163
Tssr156369 19 40276039 to 40276056 17 + TSS region transcription start site region 156369
Cpgi10813 19 40276063 to 40276474 411 CpG island CpG island 10813
Gm5693 19 40280951 to 40282794 1843 + pseudogene predicted gene 5693
Tssr159164 19 40293409 to 40293430 21 - TSS region transcription start site region 159164
Sorbs1 19 40294753 to 40513779 219026 - protein coding gene sorbin and SH3 domain containing 1
A930028N01Rik 19 40297971 to 40299555 1584 + antisense lncRNA gene RIKEN cDNA A930028N01 gene
Tssr159165 19 40299705 to 40299710 5 - TSS region transcription start site region 159165
Tssr159166 19 40305432 to 40305434 2 - TSS region transcription start site region 159166
Cpgi10814 19 40325903 to 40326641 738 CpG island CpG island 10814
Tssr159167 19 40356616 to 40356654 38 - TSS region transcription start site region 159167
Tssr159168 19 40356659 to 40356690 31 - TSS region transcription start site region 159168
Tssr159169 19 40356692 to 40356717 25 - TSS region transcription start site region 159169
Tssr159170 19 40365043 to 40365060 17 - TSS region transcription start site region 159170
Tssr159171 19 40365163 to 40365193 30 - TSS region transcription start site region 159171
Tssr159172 19 40371448 to 40371454 6 - TSS region transcription start site region 159172
Tssr159173 19 40376681 to 40376703 22 - TSS region transcription start site region 159173
Tssr159174 19 40376739 to 40376750 11 - TSS region transcription start site region 159174
Tssr159175 19 40376770 to 40376781 11 - TSS region transcription start site region 159175
Tssr159176 19 40376818 to 40376823 5 - TSS region transcription start site region 159176
Tssr159177 19 40376915 to 40376935 20 - TSS region transcription start site region 159177
Tssr159178 19 40376941 to 40377022 81 - TSS region transcription start site region 159178
Tssr159179 19 40377051 to 40377064 13 - TSS region transcription start site region 159179
Tssr159180 19 40377749 to 40377761 12 - TSS region transcription start site region 159180
Tssr159181 19 40377767 to 40377838 71 - TSS region transcription start site region 159181
Tssr159182 19 40382572 to 40382600 28 - TSS region transcription start site region 159182
Tssr159183 19 40382798 to 40382815 17 - TSS region transcription start site region 159183
Tssr159184 19 40382858 to 40382873 15 - TSS region transcription start site region 159184
Tssr159185 19 40382890 to 40382893 3 - TSS region transcription start site region 159185
Tssr159186 19 40383137 to 40383146 9 - TSS region transcription start site region 159186
Cpgi10815 19 40395401 to 40395564 163 CpG island CpG island 10815
Tssr159187 19 40405767 to 40405798 31 - TSS region transcription start site region 159187
Tssr159188 19 40406813 to 40406827 14 - TSS region transcription start site region 159188
Tssr159189 19 40415293 to 40415314 21 - TSS region transcription start site region 159189
9530039L23Rik 19 40416248 to 40416869 621 unclassified gene RIKEN cDNA 9530039L23 gene
Tssr159190 19 40450184 to 40450204 20 - TSS region transcription start site region 159190
3010085J16Rik 19 40458212 to 40458964 752 protein coding gene RIKEN cDNA 3010085J16 gene
5730409N24Rik 19 40472754 to 40474429 1675 unclassified gene RIKEN cDNA 5730409N24 gene
9130009M17Rik 19 40474596 to 40476538 1942 unclassified gene RIKEN cDNA 9130009M17 gene
Tssr5505 19 40476535 to 40476570 35 - TSS region transcription start site region 5505