Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:3989357-4458297

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205 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Acy3 19 3986661 to 3990007 3346 + protein coding gene aspartoacylase (aminoacylase) 3
Tbx10 19 3992752 to 3999511 6759 + protein coding gene T-box 10
4833408A19Rik 19 3999548 to 4000541 993 unclassified gene RIKEN cDNA 4833408A19 gene
Cpgi10379 19 3999883 to 4001239 1356 CpG island CpG island 10379
Tssr154247 19 4000395 to 4000430 35 + TSS region transcription start site region 154247
Nudt8 19 4000580 to 4002102 1522 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 8
Tssr154248 19 4000582 to 4000659 77 + TSS region transcription start site region 154248
Gm49405 19 4000626 to 4005816 5190 + protein coding gene predicted gene, 49405
Gm16312 19 4000758 to 4001232 474 - antisense lncRNA gene predicted gene 16312
Tssr154249 19 4003290 to 4003333 43 + TSS region transcription start site region 154249
Tssr154250 19 4003334 to 4003366 32 + TSS region transcription start site region 154250
Tssr154251 19 4003368 to 4003385 17 + TSS region transcription start site region 154251
Doc2g 19 4003385 to 4007005 3620 + protein coding gene double C2, gamma
Tssr154252 19 4003408 to 4003418 10 + TSS region transcription start site region 154252
Ndufv1 19 4007499 to 4012755 5256 - protein coding gene NADH:ubiquinone oxidoreductase core subunit V1
Cpgi10380 19 4012227 to 4013047 820 CpG island CpG island 10380
Tssr157432 19 4012656 to 4012736 80 - TSS region transcription start site region 157432
Tssr157433 19 4012738 to 4012749 11 - TSS region transcription start site region 157433
Gstp1 19 4035411 to 4037912 2501 - protein coding gene glutathione S-transferase, pi 1
Tssr157434 19 4036712 to 4036740 28 - TSS region transcription start site region 157434
Tssr157435 19 4036813 to 4036825 12 - TSS region transcription start site region 157435
Cpgi10381 19 4037759 to 4038096 337 CpG island CpG island 10381
Tssr5401 19 4037892 to 4037906 14 - TSS region transcription start site region 5401
Tssr157436 19 4037910 to 4037933 23 - TSS region transcription start site region 157436
Tssr157437 19 4037944 to 4037959 15 - TSS region transcription start site region 157437
Tssr5402 19 4038048 to 4038068 20 - TSS region transcription start site region 5402
Gstp2 19 4040288 to 4042221 1933 - protein coding gene glutathione S-transferase, pi 2
Tssr157438 19 4042230 to 4042242 12 - TSS region transcription start site region 157438
Tssr157439 19 4042243 to 4042273 30 - TSS region transcription start site region 157439
Tssr154253 19 4046472 to 4046481 9 + TSS region transcription start site region 154253
Tssr154254 19 4047063 to 4047070 7 + TSS region transcription start site region 154254
Gstp3 19 4057477 to 4059446 1969 - protein coding gene glutathione S-transferase pi 3
Tssr157440 19 4059037 to 4059061 24 - TSS region transcription start site region 157440
Tssr157441 19 4059077 to 4059099 22 - TSS region transcription start site region 157441
Tssr157442 19 4059449 to 4059476 27 - TSS region transcription start site region 157442
Tssr157443 19 4064095 to 4064099 4 - TSS region transcription start site region 157443
Tssr154255 19 4066410 to 4066425 15 + TSS region transcription start site region 154255
Gm42060 19 4067251 to 4071445 4194 - lncRNA gene predicted gene, 42060
Tssr157444 19 4069089 to 4069112 23 - TSS region transcription start site region 157444
Tssr157445 19 4069225 to 4069239 14 - TSS region transcription start site region 157445
Gm23927 19 4078298 to 4078512 214 - snoRNA gene predicted gene, 23927
Tssr154256 19 4081434 to 4081467 33 + TSS region transcription start site region 154256
Tssr154257 19 4081565 to 4081583 18 + TSS region transcription start site region 154257
Cabp2 19 4081578 to 4087340 5762 + protein coding gene calcium binding protein 2
Tssr154258 19 4082473 to 4082517 44 + TSS region transcription start site region 154258
Tssr154259 19 4082518 to 4082533 15 + TSS region transcription start site region 154259
Tssr154260 19 4082539 to 4082545 6 + TSS region transcription start site region 154260
Cpgi10382 19 4096535 to 4097960 1425 CpG island CpG island 10382
Tssr154261 19 4096880 to 4096945 65 + TSS region transcription start site region 154261
Cdk2ap2 19 4097182 to 4099019 1837 + protein coding gene CDK2-associated protein 2
Tssr154262 19 4097337 to 4097356 19 + TSS region transcription start site region 154262
Tssr154263 19 4097369 to 4097386 17 + TSS region transcription start site region 154263
Tssr154264 19 4097392 to 4097415 23 + TSS region transcription start site region 154264
Tssr154265 19 4097422 to 4097432 10 + TSS region transcription start site region 154265
Tssr154266 19 4097445 to 4097451 6 + TSS region transcription start site region 154266
Tssr154267 19 4097678 to 4097713 35 + TSS region transcription start site region 154267
Tssr154268 19 4097800 to 4097809 9 + TSS region transcription start site region 154268
Cpgi10383 19 4099913 to 4101492 1579 CpG island CpG island 10383
Pitpnm1 19 4099998 to 4113965 13967 + protein coding gene phosphatidylinositol transfer protein, membrane-associated 1
Tssr154269 19 4100000 to 4100083 83 + TSS region transcription start site region 154269
Tssr154270 19 4100936 to 4100987 51 + TSS region transcription start site region 154270
Tssr154271 19 4101005 to 4101008 3 + TSS region transcription start site region 154271
Tssr154272 19 4104421 to 4104423 2 + TSS region transcription start site region 154272
Tssr154273 19 4113389 to 4113408 19 + TSS region transcription start site region 154273
Aip 19 4114446 to 4125858 11412 - protein coding gene aryl-hydrocarbon receptor-interacting protein
Tssr157446 19 4118510 to 4118529 19 - TSS region transcription start site region 157446
Cpgi10384 19 4121112 to 4121689 577 CpG island CpG island 10384
Tssr157447 19 4121438 to 4121486 48 - TSS region transcription start site region 157447
Tssr157448 19 4121536 to 4121581 45 - TSS region transcription start site region 157448
Tssr157449 19 4124558 to 4124570 12 - TSS region transcription start site region 157449
Cpgi10385 19 4125668 to 4126521 853 CpG island CpG island 10385
Tssr157450 19 4125765 to 4125813 48 - TSS region transcription start site region 157450
Tssr157451 19 4125820 to 4125831 11 - TSS region transcription start site region 157451
Tssr157452 19 4125837 to 4125863 26 - TSS region transcription start site region 157452
Tssr157453 19 4125865 to 4125895 30 - TSS region transcription start site region 157453
Tssr154274 19 4125946 to 4125999 53 + TSS region transcription start site region 154274
Tmem134 19 4125960 to 4132307 6347 + protein coding gene transmembrane protein 134
Tssr154275 19 4126008 to 4126021 13 + TSS region transcription start site region 154275
Tssr154276 19 4126040 to 4126057 17 + TSS region transcription start site region 154276
Tssr157454 19 4127266 to 4127286 20 - TSS region transcription start site region 157454
Cabp4 19 4135425 to 4139609 4184 - protein coding gene calcium binding protein 4
Tssr157455 19 4139562 to 4139580 18 - TSS region transcription start site region 157455
Tssr157456 19 4139605 to 4139613 8 - TSS region transcription start site region 157456
Tssr157457 19 4139625 to 4139630 5 - TSS region transcription start site region 157457
Gpr152 19 4139799 to 4145738 5939 + protein coding gene G protein-coupled receptor 152
Tssr154277 19 4140290 to 4140321 31 + TSS region transcription start site region 154277
Cpgi10386 19 4148435 to 4149172 737 CpG island CpG island 10386
Tssr154278 19 4148616 to 4148666 50 + TSS region transcription start site region 154278
Coro1b 19 4148619 to 4154035 5416 + protein coding gene coronin, actin binding protein 1B
Tssr154279 19 4148684 to 4148697 13 + TSS region transcription start site region 154279
Tssr154280 19 4150480 to 4150527 47 + TSS region transcription start site region 154280
Tssr154281 19 4151576 to 4151588 12 + TSS region transcription start site region 154281
Tssr154282 19 4151664 to 4151683 19 + TSS region transcription start site region 154282
Tssr154283 19 4153362 to 4153402 40 + TSS region transcription start site region 154283
Tssr154284 19 4153658 to 4153672 14 + TSS region transcription start site region 154284
Tssr154285 19 4153704 to 4153773 69 + TSS region transcription start site region 154285
Tssr154286 19 4154620 to 4154629 9 + TSS region transcription start site region 154286
Tssr154287 19 4154640 to 4154668 28 + TSS region transcription start site region 154287
Ptprcap 19 4154646 to 4156710 2064 + protein coding gene protein tyrosine phosphatase, receptor type, C polypeptide-associated protein
Tssr154288 19 4156100 to 4156111 11 + TSS region transcription start site region 154288
Cpgi10387 19 4156179 to 4156434 255 CpG island CpG island 10387
Tssr157458 19 4156579 to 4156618 39 - TSS region transcription start site region 157458
Tssr154289 19 4156586 to 4156607 21 + TSS region transcription start site region 154289
Rps6kb2 19 4156792 to 4163387 6595 - protein coding gene ribosomal protein S6 kinase, polypeptide 2
Cpgi10388 19 4163066 to 4163516 450 CpG island CpG island 10388
Tssr157459 19 4163287 to 4163338 51 - TSS region transcription start site region 157459
Tssr157460 19 4163347 to 4163358 11 - TSS region transcription start site region 157460
Carns1 19 4164324 to 4175479 11155 - protein coding gene carnosine synthase 1
Cpgi10389 19 4169343 to 4170254 911 CpG island CpG island 10389
Gm17552 19 4169566 to 4174284 4718 + lincRNA gene predicted gene, 17552
Tssr154290 19 4171581 to 4171595 14 + TSS region transcription start site region 154290
Tssr157461 19 4175470 to 4175484 14 - TSS region transcription start site region 157461
Tssr5403 19 4180633 to 4180636 3 + TSS region transcription start site region 5403
Tssr154291 19 4180657 to 4180670 13 + TSS region transcription start site region 154291
Tssr157462 19 4181919 to 4181930 11 - TSS region transcription start site region 157462
Tbc1d10c 19 4184358 to 4191047 6689 - protein coding gene TBC1 domain family, member 10c
Tssr157463 19 4186111 to 4186123 12 - TSS region transcription start site region 157463
Tssr157464 19 4188756 to 4188761 5 - TSS region transcription start site region 157464
Tssr157465 19 4190959 to 4190976 17 - TSS region transcription start site region 157465
Tssr157466 19 4190985 to 4191029 44 - TSS region transcription start site region 157466
Tssr157467 19 4191035 to 4191069 34 - TSS region transcription start site region 157467
Tssr157468 19 4191076 to 4191083 7 - TSS region transcription start site region 157468
Cpgi10390 19 4191616 to 4192850 1234 CpG island CpG island 10390
Tssr154292 19 4192120 to 4192125 5 + TSS region transcription start site region 154292
Tssr154293 19 4192129 to 4192217 88 + TSS region transcription start site region 154293
Ppp1ca 19 4192174 to 4195419 3245 + protein coding gene protein phosphatase 1 catalytic subunit alpha
Tssr154294 19 4193101 to 4193130 29 + TSS region transcription start site region 154294
Tssr154295 19 4194622 to 4194647 25 + TSS region transcription start site region 154295
Tssr154296 19 4195028 to 4195057 29 + TSS region transcription start site region 154296
Rad9a 19 4195198 to 4201603 6405 - protein coding gene RAD9 checkpoint clamp component A
Cpgi10391 19 4201227 to 4201974 747 CpG island CpG island 10391
Tssr157469 19 4201375 to 4201425 50 - TSS region transcription start site region 157469
Tssr157470 19 4201571 to 4201589 18 - TSS region transcription start site region 157470
Tssr157471 19 4201591 to 4201623 32 - TSS region transcription start site region 157471
Gm30082 19 4201706 to 4203240 1534 + lncRNA gene predicted gene, 30082
Tssr154297 19 4201797 to 4201816 19 + TSS region transcription start site region 154297
Tssr154298 19 4204194 to 4204207 13 + TSS region transcription start site region 154298
Tssr154299 19 4204211 to 4204221 10 + TSS region transcription start site region 154299
Cpgi10392 19 4214154 to 4215713 1559 CpG island CpG island 10392
Clcf1 19 4214238 to 4223490 9252 + protein coding gene cardiotrophin-like cytokine factor 1
Gm45928 19 4214238 to 4233634 19396 + lncRNA gene predicted gene, 45928
Tssr154300 19 4214351 to 4214363 12 + TSS region transcription start site region 154300
Tssr154301 19 4214367 to 4214375 8 + TSS region transcription start site region 154301
Tssr154302 19 4214383 to 4214397 14 + TSS region transcription start site region 154302
Tssr154303 19 4214416 to 4214432 16 + TSS region transcription start site region 154303
Gm26115 19 4215402 to 4215488 86 - miRNA gene predicted gene, 26115
Tssr154304 19 4215832 to 4215847 15 + TSS region transcription start site region 154304
Tssr157472 19 4216095 to 4216110 15 - TSS region transcription start site region 157472
Tssr5404 19 4231612 to 4231657 45 - TSS region transcription start site region 5404
Cpgi10393 19 4231726 to 4231937 211 CpG island CpG island 10393
Pold4 19 4231899 to 4233631 1732 + protein coding gene polymerase (DNA-directed), delta 4
Tssr154305 19 4231910 to 4231928 18 + TSS region transcription start site region 154305
Tssr154306 19 4231931 to 4231959 28 + TSS region transcription start site region 154306
Tssr154307 19 4231961 to 4231977 16 + TSS region transcription start site region 154307
Tssr154308 19 4231989 to 4232000 11 + TSS region transcription start site region 154308
Tssr154309 19 4232408 to 4232425 17 + TSS region transcription start site region 154309
Tssr154310 19 4232435 to 4232479 44 + TSS region transcription start site region 154310
Tssr154311 19 4232783 to 4232804 21 + TSS region transcription start site region 154311
Tssr154312 19 4237020 to 4237021 1 + TSS region transcription start site region 154312
Tssr5405 19 4238785 to 4238788 3 + TSS region transcription start site region 5405
Cpgi10394 19 4257211 to 4258017 806 CpG island CpG island 10394
Tssr157473 19 4257604 to 4257611 7 - TSS region transcription start site region 157473
Tssr157474 19 4257623 to 4257644 21 - TSS region transcription start site region 157474
Ssh3 19 4261668 to 4269172 7504 - protein coding gene slingshot protein phosphatase 3
Tssr5406 19 4262516 to 4262517 1 + TSS region transcription start site region 5406
Mir6985 19 4263818 to 4263878 60 - miRNA gene microRNA 6985
Cpgi10395 19 4268741 to 4269442 701 CpG island CpG island 10395
Tssr157475 19 4269078 to 4269126 48 - TSS region transcription start site region 157475
Tssr157476 19 4269140 to 4269200 60 - TSS region transcription start site region 157476
Tssr157477 19 4269218 to 4269238 20 - TSS region transcription start site region 157477
Tssr157478 19 4269239 to 4269292 53 - TSS region transcription start site region 157478
Ankrd13d 19 4270180 to 4283137 12957 - protein coding gene ankyrin repeat domain 13 family, member D
Cpgi10396 19 4282619 to 4283490 871 CpG island CpG island 10396
Tssr157479 19 4283085 to 4283142 57 - TSS region transcription start site region 157479
Grk2 19 4286001 to 4306222 20221 - protein coding gene G protein-coupled receptor kinase 2
Tssr154313 19 4295623 to 4295629 6 + TSS region transcription start site region 154313
Tssr154314 19 4300614 to 4300625 11 + TSS region transcription start site region 154314
Tssr154315 19 4300626 to 4300643 17 + TSS region transcription start site region 154315
Tssr154316 19 4302519 to 4302546 27 + TSS region transcription start site region 154316
Cpgi10397 19 4305522 to 4306797 1275 CpG island CpG island 10397
Tssr157480 19 4306010 to 4306044 34 - TSS region transcription start site region 157480
Tssr157481 19 4306215 to 4306369 154 - TSS region transcription start site region 157481
Kdm2a 19 4316144 to 4398596 82452 - protein coding gene lysine (K)-specific demethylase 2A
Tssr157482 19 4318695 to 4318710 15 - TSS region transcription start site region 157482
Tssr157483 19 4321553 to 4321563 10 - TSS region transcription start site region 157483
Tssr157484 19 4333194 to 4333200 6 - TSS region transcription start site region 157484
Cpgi10398 19 4333803 to 4334072 269 CpG island CpG island 10398
Tssr157485 19 4333840 to 4333972 132 - TSS region transcription start site region 157485
Tssr157486 19 4334016 to 4334031 15 - TSS region transcription start site region 157486
Tssr157487 19 4377360 to 4377364 4 - TSS region transcription start site region 157487
Tssr157488 19 4388198 to 4388203 5 - TSS region transcription start site region 157488
Tssr157489 19 4394643 to 4394647 4 - TSS region transcription start site region 157489
Cpgi10399 19 4396445 to 4398710 2265 CpG island CpG island 10399
Tssr154317 19 4396484 to 4396497 13 + TSS region transcription start site region 154317
Tssr157490 19 4397052 to 4397098 46 - TSS region transcription start site region 157490
9430078G10Rik 19 4397713 to 4399820 2107 unclassified gene RIKEN cDNA 9430078G10 gene
Rhod 19 4425457 to 4439424 13967 - protein coding gene ras homolog family member D
Cpgi10400 19 4438907 to 4439883 976 CpG island CpG island 10400
A930001C03Rik 19 4439323 to 4448325 9002 + lncRNA gene RIKEN cDNA A930001C03 gene
Tssr157491 19 4439369 to 4439386 17 - TSS region transcription start site region 157491