Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:38154013-39004028

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79 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prdt5 19 36039544 to 38910568 2871024 QTL prion disease incubation time 5
Pde6c 19 38132781 to 38183955 51174 + protein coding gene phosphodiesterase 6C, cGMP specific, cone, alpha prime
Tssr156248 19 38162180 to 38162190 10 + TSS region transcription start site region 156248
Tssr156249 19 38162219 to 38162232 13 + TSS region transcription start site region 156249
Fra10ac1 19 38188481 to 38224138 35657 - protein coding gene FRA10AC1 homolog (human)
Cpgi10804 19 38223884 to 38224502 618 CpG island CpG island 10804
Tssr159129 19 38224065 to 38224095 30 - TSS region transcription start site region 159129
Tssr159130 19 38224096 to 38224183 87 - TSS region transcription start site region 159130
Tssr159131 19 38224705 to 38224719 14 - TSS region transcription start site region 159131
Gm32574 19 38257836 to 38260793 2957 - lncRNA gene predicted gene, 32574
Gm32491 19 38257928 to 38263285 5357 + lncRNA gene predicted gene, 32491
Gm32771 19 38264535 to 38272565 8030 - lncRNA gene predicted gene, 32771
Tssr156250 19 38264558 to 38264574 16 + TSS region transcription start site region 156250
Tssr156251 19 38264587 to 38264622 35 + TSS region transcription start site region 156251
Tssr156252 19 38264629 to 38264647 18 + TSS region transcription start site region 156252
Tssr156253 19 38264655 to 38264703 48 + TSS region transcription start site region 156253
Tssr156254 19 38264761 to 38264831 70 + TSS region transcription start site region 156254
Lgi1 19 38264782 to 38308939 44157 + protein coding gene leucine-rich repeat LGI family, member 1
Tssr156255 19 38264835 to 38264848 13 + TSS region transcription start site region 156255
Gm42723 19 38300083 to 38315270 15187 - antisense lncRNA gene predicted gene 42723
Gm9886 19 38311058 to 38327048 15990 - lncRNA gene predicted gene 9886
Tssr159132 19 38342646 to 38342654 8 - TSS region transcription start site region 159132
Gm32960 19 38348636 to 38350079 1443 + lncRNA gene predicted gene, 32960
Tssr156256 19 38348694 to 38348722 28 + TSS region transcription start site region 156256
Tssr156257 19 38348731 to 38348743 12 + TSS region transcription start site region 156257
Gm33036 19 38352239 to 38358506 6267 - lncRNA gene predicted gene, 33036
Tssr159133 19 38358476 to 38358480 4 - TSS region transcription start site region 159133
Tssr159134 19 38372506 to 38372520 14 - TSS region transcription start site region 159134
Gm41844 19 38379292 to 38381215 1923 + protein coding gene predicted gene, 41844
Gm18936 19 38387580 to 38388161 581 - pseudogene predicted gene, 18936
Pbwg20 19 38390257 to 38390480 223 QTL postnatal body weight growth 20
D19Mit20 19 38390257 to 38390480 223 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 20
Cpgi10805 19 38395665 to 38396779 1114 CpG island CpG island 10805
Tssr156258 19 38395767 to 38395796 29 + TSS region transcription start site region 156258
Tssr156259 19 38395800 to 38395817 17 + TSS region transcription start site region 156259
Slc35g1 19 38395980 to 38405607 9627 + protein coding gene solute carrier family 35, member G1
Tssr156260 19 38396020 to 38396022 2 + TSS region transcription start site region 156260
Tssr156261 19 38396025 to 38396083 58 + TSS region transcription start site region 156261
Tssr156262 19 38458539 to 38458585 46 + TSS region transcription start site region 156262
Gm46666 19 38458585 to 38463554 4969 + lncRNA gene predicted gene, 46666
D19Mit118 19 38468071 to 38468176 105 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 118
Gm24930 19 38473120 to 38473202 82 - unclassified non-coding RNA gene predicted gene, 24930
Cpgi10806 19 38480486 to 38481656 1170 CpG island CpG island 10806
Tssr156263 19 38480998 to 38481013 15 + TSS region transcription start site region 156263
Tssr5497 19 38481014 to 38481033 19 + TSS region transcription start site region 5497
Tssr156264 19 38481057 to 38481120 63 + TSS region transcription start site region 156264
Plce1 19 38481109 to 38785030 303921 + protein coding gene phospholipase C, epsilon 1
Tssr156265 19 38481152 to 38481212 60 + TSS region transcription start site region 156265
Cpgi10807 19 38524366 to 38525110 744 CpG island CpG island 10807
Tssr156266 19 38579013 to 38579028 15 + TSS region transcription start site region 156266
Gm8717 19 38703444 to 38704438 994 - pseudogene predicted gene 8717
Tssr156267 19 38734943 to 38734947 4 + TSS region transcription start site region 156267
Gm28991 19 38748760 to 38752645 3885 - antisense lncRNA gene predicted gene 28991
Noc3l 19 38788128 to 38819237 31109 - protein coding gene NOC3 like DNA replication regulator
Tssr159135 19 38789102 to 38789110 8 - TSS region transcription start site region 159135
Tssr159136 19 38809967 to 38809972 5 - TSS region transcription start site region 159136
Cpgi10808 19 38818848 to 38819493 645 CpG island CpG island 10808
Tssr159137 19 38819156 to 38819242 86 - TSS region transcription start site region 159137
Cpgi10809 19 38836158 to 38837669 1511 CpG island CpG island 10809
Tssr156268 19 38836561 to 38836612 51 + TSS region transcription start site region 156268
Tbc1d12 19 38836579 to 38919923 83344 + protein coding gene TBC1D12: TBC1 domain family, member 12
Tssr156269 19 38836677 to 38836692 15 + TSS region transcription start site region 156269
Tssr156270 19 38836699 to 38836707 8 + TSS region transcription start site region 156270
D19Wsu44e 19 38868849 to 38869010 161 DNA segment DNA segment, Chr 19, Wayne State University 44, expressed
Gm25838 19 38885242 to 38885361 119 + unclassified non-coding RNA gene predicted gene, 25838
D19Mit65 19 38910391 to 38910568 177 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 65
Cpgi10810 19 38930522 to 38931552 1030 CpG island CpG island 10810
Tssr156271 19 38930909 to 38930920 11 + TSS region transcription start site region 156271
Tssr156272 19 38930928 to 38930941 13 + TSS region transcription start site region 156272
Tssr156273 19 38930948 to 38930968 20 + TSS region transcription start site region 156273
Tssr156274 19 38930987 to 38931004 17 + TSS region transcription start site region 156274
Hells 19 38930990 to 38970470 39480 + protein coding gene helicase, lymphoid specific
Tssr156275 19 38931008 to 38931029 21 + TSS region transcription start site region 156275
Tssr156276 19 38931034 to 38931039 5 + TSS region transcription start site region 156276
Tssr156277 19 38931388 to 38931400 12 + TSS region transcription start site region 156277
Tssr156278 19 38950255 to 38950280 25 + TSS region transcription start site region 156278
Tssr156279 19 38953577 to 38953605 28 + TSS region transcription start site region 156279
Cyp2c52-ps 19 38976647 to 39003289 26642 + pseudogene cytochrome P450, family 2, subfamily c, polypeptide 52, pseudogene
Cpgi10811 19 38979168 to 38979385 217 CpG island CpG island 10811