Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:37397029-40687067

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439 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Prdt5 19 36039544 to 38910568 2871024 QTL prion disease incubation time 5
Kif11 19 37376403 to 37421859 45456 + protein coding gene kinesin family member 11
Tssr156217 19 37408725 to 37408741 16 + TSS region transcription start site region 156217
Gm46649 19 37413424 to 37413878 454 - pseudogene predicted gene, 46649
Tssr159087 19 37413875 to 37413886 11 - TSS region transcription start site region 159087
Gm38345 19 37432909 to 37434656 1747 - unclassified gene predicted gene, 38345
Cpgi10792 19 37433967 to 37435739 1772 CpG island CpG island 10792
Tssr5494 19 37434750 to 37434824 74 + TSS region transcription start site region 5494
Tssr156218 19 37434834 to 37434847 13 + TSS region transcription start site region 156218
Hhex 19 37434841 to 37440731 5890 + protein coding gene hematopoietically expressed homeobox
Tssr156219 19 37436621 to 37436625 4 + TSS region transcription start site region 156219
Tssr156220 19 37436707 to 37436716 9 + TSS region transcription start site region 156220
Tssr156221 19 37436732 to 37436748 16 + TSS region transcription start site region 156221
Tssr156222 19 37439772 to 37439789 17 + TSS region transcription start site region 156222
Gm23026 19 37463746 to 37463851 105 + snRNA gene predicted gene, 23026
Tssr156223 19 37465248 to 37465265 17 + TSS region transcription start site region 156223
1700122C19Rik 19 37465254 to 37471827 6573 + lncRNA gene RIKEN cDNA 1700122C19 gene
4933421H12Rik 19 37465260 to 37466955 1695 unclassified gene RIKEN cDNA 4933421H12 gene
Gm32294 19 37493599 to 37495964 2365 + lncRNA gene predicted gene, 32294
Tssr156224 19 37495515 to 37495519 4 + TSS region transcription start site region 156224
D19Dcr27 19 37502475 to 37502570 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 27
Tssr156225 19 37536609 to 37536635 26 + TSS region transcription start site region 156225
Tssr156226 19 37536636 to 37536657 21 + TSS region transcription start site region 156226
Tssr156227 19 37536797 to 37536822 25 + TSS region transcription start site region 156227
Tssr156228 19 37536995 to 37536998 3 + TSS region transcription start site region 156228
Gm41842 19 37545104 to 37546314 1210 - lncRNA gene predicted gene, 41842
Tssr156229 19 37547373 to 37547394 21 + TSS region transcription start site region 156229
Cpgi10793 19 37550035 to 37551135 1100 CpG island CpG island 10793
Tssr156230 19 37550397 to 37550468 71 + TSS region transcription start site region 156230
Exoc6 19 37550418 to 37683245 132827 + protein coding gene exocyst complex component 6
Tssr156231 19 37556718 to 37556719 1 + TSS region transcription start site region 156231
Tssr5495 19 37561573 to 37561579 6 - TSS region transcription start site region 5495
Tssr156232 19 37576970 to 37577002 32 + TSS region transcription start site region 156232
Tssr156233 19 37602537 to 37602541 4 + TSS region transcription start site region 156233
D19Dcr28 19 37631720 to 37631817 97 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 28
D19Mit101 19 37659224 to 37659346 122 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 101
Gm32342 19 37677387 to 37697564 20177 - lncRNA gene predicted gene, 32342
Cyp26c1 19 37685581 to 37693398 7817 + protein coding gene cytochrome P450, family 26, subfamily c, polypeptide 1
Cpgi10794 19 37686365 to 37687841 1476 CpG island CpG island 10794
Cpgi10795 19 37690776 to 37691147 371 CpG island CpG island 10795
Cpgi10796 19 37692840 to 37693515 675 CpG island CpG island 10796
Tssr159088 19 37693078 to 37693121 43 - TSS region transcription start site region 159088
Cpgi10797 19 37697202 to 37699508 2306 CpG island CpG island 10797
Tssr159089 19 37697612 to 37697630 18 - TSS region transcription start site region 159089
Tssr159090 19 37697673 to 37697694 21 - TSS region transcription start site region 159090
Tssr159091 19 37697698 to 37697714 16 - TSS region transcription start site region 159091
Tssr156234 19 37697792 to 37697805 13 + TSS region transcription start site region 156234
Cyp26a1 19 37697808 to 37701528 3720 + protein coding gene cytochrome P450, family 26, subfamily a, polypeptide 1
Tssr156235 19 37697863 to 37697870 7 + TSS region transcription start site region 156235
Gm9066 19 37722761 to 37723516 755 - pseudogene predicted gene 9066
Tssr156236 19 37784209 to 37784259 50 + TSS region transcription start site region 156236
Gm9067 19 37784259 to 37785765 1506 + pseudogene predicted gene 9067
Cpgi10798 19 37826326 to 37826529 203 CpG island CpG island 10798
Gm4757 19 37870267 to 37872256 1989 + pseudogene predicted gene 4757
Myof 19 37899036 to 38043577 144541 - protein coding gene myoferlin
Tssr159092 19 37930976 to 37930990 14 - TSS region transcription start site region 159092
Tssr159093 19 37955910 to 37955941 31 - TSS region transcription start site region 159093
Tssr159094 19 37957401 to 37957425 24 - TSS region transcription start site region 159094
Tssr159095 19 37959759 to 37959777 18 - TSS region transcription start site region 159095
Tssr156237 19 37985609 to 37985612 3 + TSS region transcription start site region 156237
Tssr159096 19 37989534 to 37989545 11 - TSS region transcription start site region 159096
Tssr159097 19 37989696 to 37989727 31 - TSS region transcription start site region 159097
Tssr156238 19 38016461 to 38016494 33 + TSS region transcription start site region 156238
Tssr159098 19 38022614 to 38022627 13 - TSS region transcription start site region 159098
Tssr159099 19 38022734 to 38022752 18 - TSS region transcription start site region 159099
Tssr159100 19 38022764 to 38022777 13 - TSS region transcription start site region 159100
Tssr159101 19 38022792 to 38022813 21 - TSS region transcription start site region 159101
Tssr159102 19 38024330 to 38024346 16 - TSS region transcription start site region 159102
Tssr159103 19 38025817 to 38025830 13 - TSS region transcription start site region 159103
Tssr156239 19 38030241 to 38030250 9 + TSS region transcription start site region 156239
Tssr159104 19 38030647 to 38030651 4 - TSS region transcription start site region 159104
Tssr159105 19 38032912 to 38032918 6 - TSS region transcription start site region 159105
Tssr5496 19 38040688 to 38040719 31 - TSS region transcription start site region 5496
Tssr159106 19 38043324 to 38043384 60 - TSS region transcription start site region 159106
Tssr159107 19 38043385 to 38043418 33 - TSS region transcription start site region 159107
Tssr159108 19 38043559 to 38043600 41 - TSS region transcription start site region 159108
Tssr159109 19 38043635 to 38043646 11 - TSS region transcription start site region 159109
Tssr159110 19 38043760 to 38043801 41 - TSS region transcription start site region 159110
I830134H01Rik 19 38051774 to 38054528 2754 - lincRNA gene RIKEN cDNA I830134H01 gene
Cpgi10799 19 38054427 to 38055419 992 CpG island CpG island 10799
Tssr156240 19 38055002 to 38055047 45 + TSS region transcription start site region 156240
Cep55 19 38055025 to 38074425 19400 + protein coding gene centrosomal protein 55
Tssr156241 19 38055058 to 38055075 17 + TSS region transcription start site region 156241
Gm23300 19 38071929 to 38072053 124 + snoRNA gene predicted gene, 23300
Cpgi10800 19 38096855 to 38097951 1096 CpG island CpG island 10800
Tssr156242 19 38096858 to 38096889 31 + TSS region transcription start site region 156242
Tssr156243 19 38097065 to 38097104 39 + TSS region transcription start site region 156243
Ffar4 19 38097079 to 38114263 17184 + protein coding gene free fatty acid receptor 4
Cpgi10801 19 38113474 to 38113755 281 CpG island CpG island 10801
Rbp4 19 38116620 to 38125321 8701 - protein coding gene retinol binding protein 4, plasma
Tssr156244 19 38116750 to 38116762 12 + TSS region transcription start site region 156244
Tssr159111 19 38116773 to 38116801 28 - TSS region transcription start site region 159111
Tssr159112 19 38116812 to 38116851 39 - TSS region transcription start site region 159112
Tssr159113 19 38116867 to 38116916 49 - TSS region transcription start site region 159113
Tssr159114 19 38118307 to 38118319 12 - TSS region transcription start site region 159114
Tssr156245 19 38118315 to 38118334 19 + TSS region transcription start site region 156245
Tssr159115 19 38118346 to 38118375 29 - TSS region transcription start site region 159115
Tssr159116 19 38118382 to 38118477 95 - TSS region transcription start site region 159116
Tssr159117 19 38118480 to 38118491 11 - TSS region transcription start site region 159117
Cpgi10802 19 38119224 to 38119678 454 CpG island CpG island 10802
Tssr159118 19 38124050 to 38124059 9 - TSS region transcription start site region 159118
Cpgi10803 19 38124061 to 38125257 1196 CpG island CpG island 10803
Tssr159119 19 38124083 to 38124131 48 - TSS region transcription start site region 159119
Tssr159120 19 38124329 to 38124354 25 - TSS region transcription start site region 159120
Tssr159121 19 38124364 to 38124383 19 - TSS region transcription start site region 159121
Tssr159122 19 38124410 to 38124435 25 - TSS region transcription start site region 159122
Tssr159123 19 38124553 to 38124574 21 - TSS region transcription start site region 159123
Tssr159124 19 38124637 to 38124677 40 - TSS region transcription start site region 159124
Tssr159125 19 38124801 to 38124816 15 - TSS region transcription start site region 159125
Tssr159126 19 38125234 to 38125240 6 - TSS region transcription start site region 159126
Tssr159127 19 38125245 to 38125254 9 - TSS region transcription start site region 159127
Tssr159128 19 38125258 to 38125306 48 - TSS region transcription start site region 159128
Gm32440 19 38125754 to 38134496 8742 - lncRNA gene predicted gene, 32440
Tssr156246 19 38132767 to 38132793 26 + TSS region transcription start site region 156246
Pde6c 19 38132781 to 38183955 51174 + protein coding gene phosphodiesterase 6C, cGMP specific, cone, alpha prime
Tssr156247 19 38132795 to 38132810 15 + TSS region transcription start site region 156247
Tssr156248 19 38162180 to 38162190 10 + TSS region transcription start site region 156248
Tssr156249 19 38162219 to 38162232 13 + TSS region transcription start site region 156249
Fra10ac1 19 38188481 to 38224138 35657 - protein coding gene FRA10AC1 homolog (human)
Cpgi10804 19 38223884 to 38224502 618 CpG island CpG island 10804
Tssr159129 19 38224065 to 38224095 30 - TSS region transcription start site region 159129
Tssr159130 19 38224096 to 38224183 87 - TSS region transcription start site region 159130
Tssr159131 19 38224705 to 38224719 14 - TSS region transcription start site region 159131
Gm32574 19 38257836 to 38260793 2957 - lncRNA gene predicted gene, 32574
Gm32491 19 38257928 to 38263285 5357 + lncRNA gene predicted gene, 32491
Gm32771 19 38264535 to 38272565 8030 - lncRNA gene predicted gene, 32771
Tssr156250 19 38264558 to 38264574 16 + TSS region transcription start site region 156250
Tssr156251 19 38264587 to 38264622 35 + TSS region transcription start site region 156251
Tssr156252 19 38264629 to 38264647 18 + TSS region transcription start site region 156252
Tssr156253 19 38264655 to 38264703 48 + TSS region transcription start site region 156253
Tssr156254 19 38264761 to 38264831 70 + TSS region transcription start site region 156254
Lgi1 19 38264782 to 38308939 44157 + protein coding gene leucine-rich repeat LGI family, member 1
Tssr156255 19 38264835 to 38264848 13 + TSS region transcription start site region 156255
Gm42723 19 38300083 to 38315270 15187 - antisense lncRNA gene predicted gene 42723
Gm9886 19 38311058 to 38327048 15990 - lncRNA gene predicted gene 9886
Tssr159132 19 38342646 to 38342654 8 - TSS region transcription start site region 159132
Gm32960 19 38348636 to 38350079 1443 + lncRNA gene predicted gene, 32960
Tssr156256 19 38348694 to 38348722 28 + TSS region transcription start site region 156256
Tssr156257 19 38348731 to 38348743 12 + TSS region transcription start site region 156257
Gm33036 19 38352239 to 38358506 6267 - lncRNA gene predicted gene, 33036
Tssr159133 19 38358476 to 38358480 4 - TSS region transcription start site region 159133
Tssr159134 19 38372506 to 38372520 14 - TSS region transcription start site region 159134
Gm41844 19 38379292 to 38381215 1923 + protein coding gene predicted gene, 41844
Gm18936 19 38387580 to 38388161 581 - pseudogene predicted gene, 18936
D19Mit20 19 38390257 to 38390480 223 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 20
Pbwg20 19 38390257 to 38390480 223 QTL postnatal body weight growth 20
Cpgi10805 19 38395665 to 38396779 1114 CpG island CpG island 10805
Tssr156258 19 38395767 to 38395796 29 + TSS region transcription start site region 156258
Tssr156259 19 38395800 to 38395817 17 + TSS region transcription start site region 156259
Slc35g1 19 38395980 to 38405607 9627 + protein coding gene solute carrier family 35, member G1
Tssr156260 19 38396020 to 38396022 2 + TSS region transcription start site region 156260
Tssr156261 19 38396025 to 38396083 58 + TSS region transcription start site region 156261
Tssr156262 19 38458539 to 38458585 46 + TSS region transcription start site region 156262
Gm46666 19 38458585 to 38463554 4969 + lncRNA gene predicted gene, 46666
D19Mit118 19 38468071 to 38468176 105 DNA segment DNA Segment, Chr 19 Massachusetts Institute of Technology 118
Gm24930 19 38473120 to 38473202 82 - unclassified non-coding RNA gene predicted gene, 24930
Cpgi10806 19 38480486 to 38481656 1170 CpG island CpG island 10806
Tssr156263 19 38480998 to 38481013 15 + TSS region transcription start site region 156263
Tssr5497 19 38481014 to 38481033 19 + TSS region transcription start site region 5497
Tssr156264 19 38481057 to 38481120 63 + TSS region transcription start site region 156264
Plce1 19 38481109 to 38785030 303921 + protein coding gene phospholipase C, epsilon 1
Tssr156265 19 38481152 to 38481212 60 + TSS region transcription start site region 156265
Cpgi10807 19 38524366 to 38525110 744 CpG island CpG island 10807
Tssr156266 19 38579013 to 38579028 15 + TSS region transcription start site region 156266
Gm8717 19 38703444 to 38704438 994 - pseudogene predicted gene 8717
Tssr156267 19 38734943 to 38734947 4 + TSS region transcription start site region 156267
Gm28991 19 38748760 to 38752645 3885 - antisense lncRNA gene predicted gene 28991
Noc3l 19 38788128 to 38819237 31109 - protein coding gene NOC3 like DNA replication regulator
Tssr159135 19 38789102 to 38789110 8 - TSS region transcription start site region 159135
Tssr159136 19 38809967 to 38809972 5 - TSS region transcription start site region 159136
Cpgi10808 19 38818848 to 38819493 645 CpG island CpG island 10808
Tssr159137 19 38819156 to 38819242 86 - TSS region transcription start site region 159137
Cpgi10809 19 38836158 to 38837669 1511 CpG island CpG island 10809
Tssr156268 19 38836561 to 38836612 51 + TSS region transcription start site region 156268
Tbc1d12 19 38836579 to 38919923 83344 + protein coding gene TBC1D12: TBC1 domain family, member 12
Tssr156269 19 38836677 to 38836692 15 + TSS region transcription start site region 156269
Tssr156270 19 38836699 to 38836707 8 + TSS region transcription start site region 156270
D19Wsu44e 19 38868849 to 38869010 161 DNA segment DNA segment, Chr 19, Wayne State University 44, expressed
Gm25838 19 38885242 to 38885361 119 + unclassified non-coding RNA gene predicted gene, 25838
D19Mit65 19 38910391 to 38910568 177 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 65
Cpgi10810 19 38930522 to 38931552 1030 CpG island CpG island 10810
Tssr156271 19 38930909 to 38930920 11 + TSS region transcription start site region 156271
Tssr156272 19 38930928 to 38930941 13 + TSS region transcription start site region 156272
Tssr156273 19 38930948 to 38930968 20 + TSS region transcription start site region 156273
Tssr156274 19 38930987 to 38931004 17 + TSS region transcription start site region 156274
Hells 19 38930990 to 38970470 39480 + protein coding gene helicase, lymphoid specific
Tssr156275 19 38931008 to 38931029 21 + TSS region transcription start site region 156275
Tssr156276 19 38931034 to 38931039 5 + TSS region transcription start site region 156276
Tssr156277 19 38931388 to 38931400 12 + TSS region transcription start site region 156277
Tssr156278 19 38950255 to 38950280 25 + TSS region transcription start site region 156278
Tssr156279 19 38953577 to 38953605 28 + TSS region transcription start site region 156279
Cyp2c52-ps 19 38976647 to 39003289 26642 + pseudogene cytochrome P450, family 2, subfamily c, polypeptide 52, pseudogene
Cpgi10811 19 38979168 to 38979385 217 CpG island CpG island 10811
Tssr156280 19 39006914 to 39006923 9 + TSS region transcription start site region 156280
Tssr156281 19 39006948 to 39006972 24 + TSS region transcription start site region 156281
Cyp2c55 19 39007019 to 39042693 35674 + protein coding gene cytochrome P450, family 2, subfamily c, polypeptide 55
Gm23800 19 39007026 to 39007089 63 - miRNA gene predicted gene, 23800
Tssr156282 19 39007051 to 39007093 42 + TSS region transcription start site region 156282
Tssr156283 19 39007137 to 39007148 11 + TSS region transcription start site region 156283
Tssr156284 19 39007162 to 39007165 3 + TSS region transcription start site region 156284