Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:3651726-4811937

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423 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Lrp5 19 3584828 to 3686564 101736 - protein coding gene low density lipoprotein receptor-related protein 5
Tssr157399 19 3651906 to 3651930 24 - TSS region transcription start site region 157399
Tssr154185 19 3652038 to 3652045 7 + TSS region transcription start site region 154185
Cpgi10369 19 3685766 to 3687301 1535 CpG island CpG island 10369
Gm36672 19 3686410 to 3692435 6025 + protein coding gene predicted gene, 36672
Tssr5400 19 3686499 to 3686506 7 - TSS region transcription start site region 5400
Tssr157400 19 3686523 to 3686547 24 - TSS region transcription start site region 157400
Tssr157401 19 3686549 to 3686586 37 - TSS region transcription start site region 157401
Gm36608 19 3689236 to 3708226 18990 - lncRNA gene predicted gene, 36608
Cpgi10370 19 3707998 to 3708917 919 CpG island CpG island 10370
Tssr154186 19 3708287 to 3708395 108 + TSS region transcription start site region 154186
1810055G02Rik 19 3708333 to 3717881 9548 + protein coding gene RIKEN cDNA 1810055G02 gene
Gm36787 19 3712777 to 3744426 31649 - protein coding gene predicted gene, 36787
Cpgi10371 19 3719243 to 3719772 529 CpG island CpG island 10371
Gm36871 19 3719885 to 3721369 1484 + lncRNA gene predicted gene, 36871
Gm2141 19 3730432 to 3731047 615 - pseudogene predicted gene 2141
Tssr157402 19 3744374 to 3744392 18 - TSS region transcription start site region 157402
Cpgi10372 19 3767246 to 3769272 2026 CpG island CpG island 10372
Tssr154187 19 3767361 to 3767384 23 + TSS region transcription start site region 154187
Tssr154188 19 3767397 to 3767425 28 + TSS region transcription start site region 154188
Kmt5b 19 3767421 to 3818303 50882 + protein coding gene lysine methyltransferase 5B
Tssr154189 19 3767867 to 3767921 54 + TSS region transcription start site region 154189
Tssr154190 19 3767953 to 3767970 17 + TSS region transcription start site region 154190
Tssr154191 19 3768112 to 3768207 95 + TSS region transcription start site region 154191
Tssr157403 19 3768694 to 3768709 15 - TSS region transcription start site region 157403
Tssr154192 19 3769104 to 3769112 8 + TSS region transcription start site region 154192
Tssr154193 19 3787367 to 3787373 6 + TSS region transcription start site region 154193
Gm16066 19 3798615 to 3852419 53804 - unclassified non-coding RNA gene predicted gene 16066
Gm19209 19 3821562 to 3822385 823 - pseudogene predicted gene, 19209
Cpgi10373 19 3851047 to 3852700 1653 CpG island CpG island 10373
Chka 19 3851773 to 3894369 42596 + protein coding gene choline kinase alpha
Tssr154194 19 3851800 to 3851811 11 + TSS region transcription start site region 154194
Tssr154195 19 3851823 to 3851840 17 + TSS region transcription start site region 154195
Tssr154196 19 3851855 to 3851860 5 + TSS region transcription start site region 154196
Tssr154197 19 3851927 to 3851934 7 + TSS region transcription start site region 154197
Tssr154198 19 3851939 to 3851948 9 + TSS region transcription start site region 154198
Tssr154199 19 3851957 to 3851962 5 + TSS region transcription start site region 154199
Tssr154200 19 3851972 to 3851981 9 + TSS region transcription start site region 154200
Tssr154201 19 3896049 to 3896056 7 + TSS region transcription start site region 154201
Tcirg1 19 3896050 to 3907133 11083 - protein coding gene T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
Tssr157404 19 3897100 to 3897112 12 - TSS region transcription start site region 157404
Tssr157405 19 3897518 to 3897583 65 - TSS region transcription start site region 157405
Tssr157406 19 3898848 to 3898854 6 - TSS region transcription start site region 157406
Tssr157407 19 3899046 to 3899069 23 - TSS region transcription start site region 157407
Tssr157408 19 3900555 to 3900597 42 - TSS region transcription start site region 157408
Tssr157409 19 3900856 to 3900867 11 - TSS region transcription start site region 157409
Tssr157410 19 3902077 to 3902097 20 - TSS region transcription start site region 157410
Tssr157411 19 3903656 to 3903673 17 - TSS region transcription start site region 157411
Cpgi10374 19 3904082 to 3904387 305 CpG island CpG island 10374
Tssr157412 19 3904709 to 3904723 14 - TSS region transcription start site region 157412
Tssr157413 19 3905177 to 3905196 19 - TSS region transcription start site region 157413
Tssr157414 19 3905235 to 3905261 26 - TSS region transcription start site region 157414
Tssr157415 19 3905269 to 3905292 23 - TSS region transcription start site region 157415
Tssr157416 19 3907047 to 3907064 17 - TSS region transcription start site region 157416
Tssr157417 19 3907087 to 3907117 30 - TSS region transcription start site region 157417
Cpgi10375 19 3907184 to 3907352 168 CpG island CpG island 10375
Tssr154202 19 3907259 to 3907273 14 + TSS region transcription start site region 154202
Tssr154203 19 3907448 to 3907459 11 + TSS region transcription start site region 154203
Tssr157418 19 3907963 to 3907984 21 - TSS region transcription start site region 157418
Ndufs8 19 3908870 to 3912717 3847 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S8
Tssr157419 19 3911753 to 3911759 6 - TSS region transcription start site region 157419
Tssr157420 19 3911770 to 3911790 20 - TSS region transcription start site region 157420
Tssr157421 19 3911801 to 3911846 45 - TSS region transcription start site region 157421
Cpgi10376 19 3912340 to 3913151 811 CpG island CpG island 10376
Tssr157422 19 3912711 to 3912722 11 - TSS region transcription start site region 157422
Tssr157423 19 3912733 to 3912779 46 - TSS region transcription start site region 157423
Tssr154204 19 3913041 to 3913059 18 + TSS region transcription start site region 154204
Aldh3b1 19 3913493 to 3929761 16268 - protein coding gene aldehyde dehydrogenase 3 family, member B1
Tssr157424 19 3914685 to 3914718 33 - TSS region transcription start site region 157424
Tssr157425 19 3918677 to 3918711 34 - TSS region transcription start site region 157425
Gm42059 19 3919391 to 3920826 1435 + lncRNA gene predicted gene, 42059
Gm29846 19 3923864 to 3924975 1111 + lncRNA gene predicted gene, 29846
Tssr157426 19 3929723 to 3929765 42 - TSS region transcription start site region 157426
Tssr157427 19 3929767 to 3929783 16 - TSS region transcription start site region 157427
Tssr157428 19 3930802 to 3930814 12 - TSS region transcription start site region 157428
Tssr157429 19 3931792 to 3931835 43 - TSS region transcription start site region 157429
Tssr154205 19 3933473 to 3933484 11 + TSS region transcription start site region 154205
Unc93b1 19 3935186 to 3949340 14154 + protein coding gene unc-93 homolog B1, TLR signaling regulator
Tssr154206 19 3935203 to 3935247 44 + TSS region transcription start site region 154206
Tssr154207 19 3935252 to 3935261 9 + TSS region transcription start site region 154207
Tssr154208 19 3935471 to 3935483 12 + TSS region transcription start site region 154208
Cpgi10377 19 3935660 to 3936472 812 CpG island CpG island 10377
Tssr154209 19 3935768 to 3935787 19 + TSS region transcription start site region 154209
Tssr154210 19 3935793 to 3935838 45 + TSS region transcription start site region 154210
Tssr157430 19 3935800 to 3935815 15 - TSS region transcription start site region 157430
Tssr154211 19 3936066 to 3936091 25 + TSS region transcription start site region 154211
Tssr154212 19 3936092 to 3936103 11 + TSS region transcription start site region 154212
Tssr154213 19 3936253 to 3936353 100 + TSS region transcription start site region 154213
Tssr154214 19 3936354 to 3936391 37 + TSS region transcription start site region 154214
Tssr154215 19 3936679 to 3936696 17 + TSS region transcription start site region 154215
Tssr154216 19 3937046 to 3937091 45 + TSS region transcription start site region 154216
Tssr154217 19 3938161 to 3938201 40 + TSS region transcription start site region 154217
Tssr154218 19 3941522 to 3941533 11 + TSS region transcription start site region 154218
Tssr154219 19 3941548 to 3941557 9 + TSS region transcription start site region 154219
Tssr154220 19 3941587 to 3941601 14 + TSS region transcription start site region 154220
Tssr154221 19 3941623 to 3941646 23 + TSS region transcription start site region 154221
Tssr154222 19 3941866 to 3941877 11 + TSS region transcription start site region 154222
Tssr154223 19 3941894 to 3941911 17 + TSS region transcription start site region 154223
Tssr154224 19 3941919 to 3941928 9 + TSS region transcription start site region 154224
Tssr154225 19 3941932 to 3941946 14 + TSS region transcription start site region 154225
Tssr154226 19 3941950 to 3941971 21 + TSS region transcription start site region 154226
Tssr154227 19 3942368 to 3942398 30 + TSS region transcription start site region 154227
Tssr157431 19 3942390 to 3942450 60 - TSS region transcription start site region 157431
Cpgi10378 19 3942714 to 3943667 953 CpG island CpG island 10378
Tssr154228 19 3943501 to 3943517 16 + TSS region transcription start site region 154228
Tssr154229 19 3943586 to 3943610 24 + TSS region transcription start site region 154229
Tssr154230 19 3944146 to 3944171 25 + TSS region transcription start site region 154230
Tssr154231 19 3947036 to 3947055 19 + TSS region transcription start site region 154231
Tssr154232 19 3947068 to 3947093 25 + TSS region transcription start site region 154232
Tssr154233 19 3948620 to 3948680 60 + TSS region transcription start site region 154233
Tssr154234 19 3948773 to 3948785 12 + TSS region transcription start site region 154234
Tssr154235 19 3948859 to 3948871 12 + TSS region transcription start site region 154235
Tssr154236 19 3949013 to 3949042 29 + TSS region transcription start site region 154236
Aldh3b3 19 3958645 to 3972103 13458 + protein coding gene aldehyde dehydrogenase 3 family, member B3
Tssr154237 19 3958803 to 3958832 29 + TSS region transcription start site region 154237
Tssr154238 19 3964330 to 3964344 14 + TSS region transcription start site region 154238
Tssr154239 19 3972322 to 3972345 23 + TSS region transcription start site region 154239
Aldh3b2 19 3972328 to 3981645 9317 + protein coding gene aldehyde dehydrogenase 3 family, member B2
Tssr154240 19 3972423 to 3972433 10 + TSS region transcription start site region 154240
Tssr154241 19 3972437 to 3972468 31 + TSS region transcription start site region 154241
Tssr154242 19 3972475 to 3972503 28 + TSS region transcription start site region 154242
Tssr154243 19 3972507 to 3972566 59 + TSS region transcription start site region 154243
Tssr154244 19 3979984 to 3980016 32 + TSS region transcription start site region 154244
Tssr154245 19 3986564 to 3986579 15 + TSS region transcription start site region 154245
Acy3 19 3986661 to 3990007 3346 + protein coding gene aspartoacylase (aminoacylase) 3
Tssr154246 19 3988339 to 3988347 8 + TSS region transcription start site region 154246
Tbx10 19 3992752 to 3999511 6759 + protein coding gene T-box 10
4833408A19Rik 19 3999548 to 4000541 993 unclassified gene RIKEN cDNA 4833408A19 gene
Cpgi10379 19 3999883 to 4001239 1356 CpG island CpG island 10379
Tssr154247 19 4000395 to 4000430 35 + TSS region transcription start site region 154247
Nudt8 19 4000580 to 4002102 1522 + protein coding gene nudix (nucleoside diphosphate linked moiety X)-type motif 8
Tssr154248 19 4000582 to 4000659 77 + TSS region transcription start site region 154248
Gm49405 19 4000626 to 4005816 5190 + protein coding gene predicted gene, 49405
Gm16312 19 4000758 to 4001232 474 - antisense lncRNA gene predicted gene 16312
Tssr154249 19 4003290 to 4003333 43 + TSS region transcription start site region 154249
Tssr154250 19 4003334 to 4003366 32 + TSS region transcription start site region 154250
Tssr154251 19 4003368 to 4003385 17 + TSS region transcription start site region 154251
Doc2g 19 4003385 to 4007005 3620 + protein coding gene double C2, gamma
Tssr154252 19 4003408 to 4003418 10 + TSS region transcription start site region 154252
Ndufv1 19 4007499 to 4012755 5256 - protein coding gene NADH:ubiquinone oxidoreductase core subunit V1
Cpgi10380 19 4012227 to 4013047 820 CpG island CpG island 10380
Tssr157432 19 4012656 to 4012736 80 - TSS region transcription start site region 157432
Tssr157433 19 4012738 to 4012749 11 - TSS region transcription start site region 157433
Gstp1 19 4035411 to 4037912 2501 - protein coding gene glutathione S-transferase, pi 1
Tssr157434 19 4036712 to 4036740 28 - TSS region transcription start site region 157434
Tssr157435 19 4036813 to 4036825 12 - TSS region transcription start site region 157435
Cpgi10381 19 4037759 to 4038096 337 CpG island CpG island 10381
Tssr5401 19 4037892 to 4037906 14 - TSS region transcription start site region 5401
Tssr157436 19 4037910 to 4037933 23 - TSS region transcription start site region 157436
Tssr157437 19 4037944 to 4037959 15 - TSS region transcription start site region 157437
Tssr5402 19 4038048 to 4038068 20 - TSS region transcription start site region 5402
Gstp2 19 4040288 to 4042221 1933 - protein coding gene glutathione S-transferase, pi 2
Tssr157438 19 4042230 to 4042242 12 - TSS region transcription start site region 157438
Tssr157439 19 4042243 to 4042273 30 - TSS region transcription start site region 157439
Tssr154253 19 4046472 to 4046481 9 + TSS region transcription start site region 154253
Tssr154254 19 4047063 to 4047070 7 + TSS region transcription start site region 154254
Gstp3 19 4057477 to 4059446 1969 - protein coding gene glutathione S-transferase pi 3
Tssr157440 19 4059037 to 4059061 24 - TSS region transcription start site region 157440
Tssr157441 19 4059077 to 4059099 22 - TSS region transcription start site region 157441
Tssr157442 19 4059449 to 4059476 27 - TSS region transcription start site region 157442
Tssr157443 19 4064095 to 4064099 4 - TSS region transcription start site region 157443
Tssr154255 19 4066410 to 4066425 15 + TSS region transcription start site region 154255
Gm42060 19 4067251 to 4071445 4194 - lncRNA gene predicted gene, 42060
Tssr157444 19 4069089 to 4069112 23 - TSS region transcription start site region 157444
Tssr157445 19 4069225 to 4069239 14 - TSS region transcription start site region 157445
Gm23927 19 4078298 to 4078512 214 - snoRNA gene predicted gene, 23927
Tssr154256 19 4081434 to 4081467 33 + TSS region transcription start site region 154256
Tssr154257 19 4081565 to 4081583 18 + TSS region transcription start site region 154257
Cabp2 19 4081578 to 4087340 5762 + protein coding gene calcium binding protein 2
Tssr154258 19 4082473 to 4082517 44 + TSS region transcription start site region 154258
Tssr154259 19 4082518 to 4082533 15 + TSS region transcription start site region 154259
Tssr154260 19 4082539 to 4082545 6 + TSS region transcription start site region 154260
Cpgi10382 19 4096535 to 4097960 1425 CpG island CpG island 10382
Tssr154261 19 4096880 to 4096945 65 + TSS region transcription start site region 154261
Cdk2ap2 19 4097182 to 4099019 1837 + protein coding gene CDK2-associated protein 2
Tssr154262 19 4097337 to 4097356 19 + TSS region transcription start site region 154262
Tssr154263 19 4097369 to 4097386 17 + TSS region transcription start site region 154263
Tssr154264 19 4097392 to 4097415 23 + TSS region transcription start site region 154264
Tssr154265 19 4097422 to 4097432 10 + TSS region transcription start site region 154265
Tssr154266 19 4097445 to 4097451 6 + TSS region transcription start site region 154266
Tssr154267 19 4097678 to 4097713 35 + TSS region transcription start site region 154267
Tssr154268 19 4097800 to 4097809 9 + TSS region transcription start site region 154268
Cpgi10383 19 4099913 to 4101492 1579 CpG island CpG island 10383
Pitpnm1 19 4099998 to 4113965 13967 + protein coding gene phosphatidylinositol transfer protein, membrane-associated 1
Tssr154269 19 4100000 to 4100083 83 + TSS region transcription start site region 154269
Tssr154270 19 4100936 to 4100987 51 + TSS region transcription start site region 154270
Tssr154271 19 4101005 to 4101008 3 + TSS region transcription start site region 154271
Tssr154272 19 4104421 to 4104423 2 + TSS region transcription start site region 154272
Tssr154273 19 4113389 to 4113408 19 + TSS region transcription start site region 154273
Aip 19 4114446 to 4125858 11412 - protein coding gene aryl-hydrocarbon receptor-interacting protein
Tssr157446 19 4118510 to 4118529 19 - TSS region transcription start site region 157446
Cpgi10384 19 4121112 to 4121689 577 CpG island CpG island 10384
Tssr157447 19 4121438 to 4121486 48 - TSS region transcription start site region 157447
Tssr157448 19 4121536 to 4121581 45 - TSS region transcription start site region 157448
Tssr157449 19 4124558 to 4124570 12 - TSS region transcription start site region 157449
Cpgi10385 19 4125668 to 4126521 853 CpG island CpG island 10385
Tssr157450 19 4125765 to 4125813 48 - TSS region transcription start site region 157450
Tssr157451 19 4125820 to 4125831 11 - TSS region transcription start site region 157451
Tssr157452 19 4125837 to 4125863 26 - TSS region transcription start site region 157452
Tssr157453 19 4125865 to 4125895 30 - TSS region transcription start site region 157453