Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:36341461-37132096

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80 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm47735 19 36347614 to 36348298 684 - antisense lncRNA gene predicted gene, 47735
Tssr156175 19 36347786 to 36347827 41 + TSS region transcription start site region 156175
Cpgi10777 19 36347930 to 36349657 1727 CpG island CpG island 10777
Tssr156176 19 36348285 to 36348313 28 + TSS region transcription start site region 156176
Pcgf5 19 36348309 to 36460970 112661 + protein coding gene polycomb group ring finger 5
Tssr156177 19 36348317 to 36348353 36 + TSS region transcription start site region 156177
Tssr156178 19 36348384 to 36348395 11 + TSS region transcription start site region 156178
Tssr156179 19 36348412 to 36348423 11 + TSS region transcription start site region 156179
Tssr156180 19 36348470 to 36348500 30 + TSS region transcription start site region 156180
Tssr156181 19 36348506 to 36348550 44 + TSS region transcription start site region 156181
Tssr159043 19 36349287 to 36349319 32 - TSS region transcription start site region 159043
Tssr159044 19 36349401 to 36349417 16 - TSS region transcription start site region 159044
Tssr156182 19 36349576 to 36349584 8 + TSS region transcription start site region 156182
Gm47773 19 36361343 to 36361811 468 + pseudogene predicted gene, 47773
Gm23170 19 36384792 to 36384897 105 - snRNA gene predicted gene, 23170
Gm9042 19 36404447 to 36406110 1663 + pseudogene predicted gene 9042
Tssr156183 19 36404882 to 36404887 5 + TSS region transcription start site region 156183
Cpgi10778 19 36409251 to 36410447 1196 CpG island CpG island 10778
Tssr156184 19 36409630 to 36409662 32 + TSS region transcription start site region 156184
Tssr156185 19 36409669 to 36409691 22 + TSS region transcription start site region 156185
Tssr156186 19 36409719 to 36409757 38 + TSS region transcription start site region 156186
Tssr156187 19 36409762 to 36409771 9 + TSS region transcription start site region 156187
Tssr156188 19 36409833 to 36409856 23 + TSS region transcription start site region 156188
Tssr156189 19 36409911 to 36409920 9 + TSS region transcription start site region 156189
Tssr156190 19 36409967 to 36409978 11 + TSS region transcription start site region 156190
F530104D19Rik 19 36448992 to 36451157 2165 - antisense lncRNA gene RIKEN cDNA F530104D19 gene
Tssr156191 19 36464037 to 36464053 16 + TSS region transcription start site region 156191
Gm32143 19 36533923 to 36538802 4879 - lncRNA gene predicted gene, 32143
Gm41838 19 36552925 to 36553977 1052 - lncRNA gene predicted gene, 41838
Cpgi10779 19 36553839 to 36555475 1636 CpG island CpG island 10779
Hectd2 19 36554639 to 36621135 66496 + protein coding gene HECT domain E3 ubiquitin protein ligase 2
Tssr156192 19 36554661 to 36554688 27 + TSS region transcription start site region 156192
Tssr156193 19 36554690 to 36554714 24 + TSS region transcription start site region 156193
Tssr156194 19 36554719 to 36554731 12 + TSS region transcription start site region 156194
Tssr156195 19 36554742 to 36554773 31 + TSS region transcription start site region 156195
Tssr156196 19 36554774 to 36554793 19 + TSS region transcription start site region 156196
Hectd2os 19 36619418 to 36689479 70061 - lncRNA gene Hectd2, opposite strand
Tssr159045 19 36625998 to 36626035 37 - TSS region transcription start site region 159045
Tssr159046 19 36626045 to 36626061 16 - TSS region transcription start site region 159046
Tssr159047 19 36689269 to 36689306 37 - TSS region transcription start site region 159047
Tssr159048 19 36689319 to 36689368 49 - TSS region transcription start site region 159048
Ppp1r3c 19 36731731 to 36736604 4873 - protein coding gene protein phosphatase 1, regulatory subunit 3C
Cpgi10780 19 36736461 to 36737096 635 CpG island CpG island 10780
Tssr159049 19 36736656 to 36736670 14 - TSS region transcription start site region 159049
Tssr159050 19 36797084 to 36797094 10 - TSS region transcription start site region 159050
Cpgi10781 19 36815461 to 36815636 175 CpG island CpG island 10781
Cpgi10782 19 36818276 to 36818508 232 CpG island CpG island 10782
Tssr156197 19 36833178 to 36833195 17 + TSS region transcription start site region 156197
Cpgi10783 19 36833961 to 36834943 982 CpG island CpG island 10783
Tssr156198 19 36834196 to 36834208 12 + TSS region transcription start site region 156198
Tssr156199 19 36834215 to 36834297 82 + TSS region transcription start site region 156199
Tnks2 19 36834232 to 36893477 59245 + protein coding gene tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase 2
Tssr156200 19 36834304 to 36834309 5 + TSS region transcription start site region 156200
Tssr156201 19 36879260 to 36879279 19 + TSS region transcription start site region 156201
Tssr156202 19 36890791 to 36890814 23 + TSS region transcription start site region 156202
Cpgi10784 19 36904073 to 36904750 677 CpG island CpG island 10784
Tssr156203 19 36917067 to 36917075 8 + TSS region transcription start site region 156203
Fgfbp3 19 36917550 to 36919599 2049 - protein coding gene fibroblast growth factor binding protein 3
Tssr159051 19 36918248 to 36918287 39 - TSS region transcription start site region 159051
Cpgi10785 19 36918377 to 36919410 1033 CpG island CpG island 10785
Tssr159052 19 36919052 to 36919064 12 - TSS region transcription start site region 159052
Tssr159053 19 36919077 to 36919134 57 - TSS region transcription start site region 159053
Tssr159054 19 36919606 to 36919622 16 - TSS region transcription start site region 159054
Tssr159055 19 36919631 to 36919646 15 - TSS region transcription start site region 159055
Tssr159056 19 36919652 to 36919659 7 - TSS region transcription start site region 159056
Cpgi10786 19 36925609 to 36926678 1069 CpG island CpG island 10786
Tssr159057 19 36926027 to 36926056 29 - TSS region transcription start site region 159057
Tssr156204 19 36926071 to 36926177 106 + TSS region transcription start site region 156204
Btaf1 19 36926079 to 37012752 86673 + protein coding gene B-TFIID TATA-box binding protein associated factor 1
Tssr156205 19 36926669 to 36926674 5 + TSS region transcription start site region 156205
Tssr156206 19 36928005 to 36928013 8 + TSS region transcription start site region 156206
Tssr156207 19 36930029 to 36930032 3 + TSS region transcription start site region 156207
Cpgi10787 19 37018326 to 37018794 468 CpG island CpG island 10787
Cpeb3 19 37021291 to 37208601 187310 - protein coding gene cytoplasmic polyadenylation element binding protein 3
Tssr159058 19 37023207 to 37023217 10 - TSS region transcription start site region 159058
Tssr159059 19 37077437 to 37077449 12 - TSS region transcription start site region 159059
Tssr159060 19 37077456 to 37077468 12 - TSS region transcription start site region 159060
Tssr159061 19 37077504 to 37077523 19 - TSS region transcription start site region 159061
D19Dcr26 19 37100019 to 37100114 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 26
Tssr159062 19 37127707 to 37127710 3 - TSS region transcription start site region 159062