Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:35791219-36689193

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78 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
D19Mit12 19 35810580 to 35810726 146 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 12
A830019P07Rik 19 35835221 to 35924578 89357 - lincRNA gene RIKEN cDNA A830019P07 gene
D19Mit133 19 35844193 to 35844305 112 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 133
Tssr159028 19 35858379 to 35858381 2 - TSS region transcription start site region 159028
Gm17926 19 35870079 to 35870772 693 + pseudogene predicted gene, 17926
Tssr159029 19 35924488 to 35924508 20 - TSS region transcription start site region 159029
Htr7 19 35958734 to 36057507 98773 - protein coding gene 5-hydroxytryptamine (serotonin) receptor 7
Cpgi10773 19 35969595 to 35969927 332 CpG island CpG island 10773
Tssr156170 19 35975048 to 35975049 1 + TSS region transcription start site region 156170
D19Mit63 19 36039544 to 36039693 149 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 63
Sluc1 19 36039544 to 46773082 10733538 QTL susceptibility to lung cancer 1
Prdt5 19 36039544 to 38910568 2871024 QTL prion disease incubation time 5
Cpgi10774 19 36056542 to 36057888 1346 CpG island CpG island 10774
Cpgi10775 19 36083640 to 36083908 268 CpG island CpG island 10775
Tssr156171 19 36083696 to 36083736 40 + TSS region transcription start site region 156171
Rpp30 19 36083716 to 36104772 21056 + protein coding gene ribonuclease P/MRP 30 subunit
Tssr156172 19 36083746 to 36083756 10 + TSS region transcription start site region 156172
Cpgi10776 19 36109353 to 36109613 260 CpG island CpG island 10776
Ankrd1 19 36111965 to 36119844 7879 - protein coding gene ankyrin repeat domain 1 (cardiac muscle)
Tssr159030 19 36112056 to 36112095 39 - TSS region transcription start site region 159030
Tssr159031 19 36112317 to 36112323 6 - TSS region transcription start site region 159031
Tssr159032 19 36113021 to 36113025 4 - TSS region transcription start site region 159032
Tssr159033 19 36114282 to 36114316 34 - TSS region transcription start site region 159033
Tssr156173 19 36115241 to 36115252 11 + TSS region transcription start site region 156173
Tssr159034 19 36118138 to 36118152 14 - TSS region transcription start site region 159034
Tssr5493 19 36118236 to 36118246 10 + TSS region transcription start site region 5493
Tssr159035 19 36119249 to 36119262 13 - TSS region transcription start site region 159035
Tssr159036 19 36119282 to 36119303 21 - TSS region transcription start site region 159036
Tssr159037 19 36119357 to 36119367 10 - TSS region transcription start site region 159037
Tssr159038 19 36119713 to 36119723 10 - TSS region transcription start site region 159038
Tssr159039 19 36119833 to 36119847 14 - TSS region transcription start site region 159039
Tssr159040 19 36120094 to 36120106 12 - TSS region transcription start site region 159040
Gm32081 19 36184561 to 36221676 37115 + lncRNA gene predicted gene, 32081
Gm32027 19 36216219 to 36264193 47974 - lncRNA gene predicted gene, 32027
Tssr156174 19 36235472 to 36235481 9 + TSS region transcription start site region 156174
Gm46664 19 36235979 to 36243323 7344 + lncRNA gene predicted gene, 46664
Tssr159041 19 36264178 to 36264185 7 - TSS region transcription start site region 159041
Tssr159042 19 36264190 to 36264200 10 - TSS region transcription start site region 159042
Gm19160 19 36339044 to 36339931 887 - pseudogene predicted gene, 19160
Gm47735 19 36347614 to 36348298 684 - antisense lncRNA gene predicted gene, 47735
Tssr156175 19 36347786 to 36347827 41 + TSS region transcription start site region 156175
Cpgi10777 19 36347930 to 36349657 1727 CpG island CpG island 10777
Tssr156176 19 36348285 to 36348313 28 + TSS region transcription start site region 156176
Pcgf5 19 36348309 to 36460970 112661 + protein coding gene polycomb group ring finger 5
Tssr156177 19 36348317 to 36348353 36 + TSS region transcription start site region 156177
Tssr156178 19 36348384 to 36348395 11 + TSS region transcription start site region 156178
Tssr156179 19 36348412 to 36348423 11 + TSS region transcription start site region 156179
Tssr156180 19 36348470 to 36348500 30 + TSS region transcription start site region 156180
Tssr156181 19 36348506 to 36348550 44 + TSS region transcription start site region 156181
Tssr159043 19 36349287 to 36349319 32 - TSS region transcription start site region 159043
Tssr159044 19 36349401 to 36349417 16 - TSS region transcription start site region 159044
Tssr156182 19 36349576 to 36349584 8 + TSS region transcription start site region 156182
Gm47773 19 36361343 to 36361811 468 + pseudogene predicted gene, 47773
Gm23170 19 36384792 to 36384897 105 - snRNA gene predicted gene, 23170
Gm9042 19 36404447 to 36406110 1663 + pseudogene predicted gene 9042
Tssr156183 19 36404882 to 36404887 5 + TSS region transcription start site region 156183
Cpgi10778 19 36409251 to 36410447 1196 CpG island CpG island 10778
Tssr156184 19 36409630 to 36409662 32 + TSS region transcription start site region 156184
Tssr156185 19 36409669 to 36409691 22 + TSS region transcription start site region 156185
Tssr156186 19 36409719 to 36409757 38 + TSS region transcription start site region 156186
Tssr156187 19 36409762 to 36409771 9 + TSS region transcription start site region 156187
Tssr156188 19 36409833 to 36409856 23 + TSS region transcription start site region 156188
Tssr156189 19 36409911 to 36409920 9 + TSS region transcription start site region 156189
Tssr156190 19 36409967 to 36409978 11 + TSS region transcription start site region 156190
F530104D19Rik 19 36448992 to 36451157 2165 - antisense lncRNA gene RIKEN cDNA F530104D19 gene
Tssr156191 19 36464037 to 36464053 16 + TSS region transcription start site region 156191
Gm32143 19 36533923 to 36538802 4879 - lncRNA gene predicted gene, 32143
Gm41838 19 36552925 to 36553977 1052 - lncRNA gene predicted gene, 41838
Cpgi10779 19 36553839 to 36555475 1636 CpG island CpG island 10779
Hectd2 19 36554639 to 36621135 66496 + protein coding gene HECT domain E3 ubiquitin protein ligase 2
Tssr156192 19 36554661 to 36554688 27 + TSS region transcription start site region 156192
Tssr156193 19 36554690 to 36554714 24 + TSS region transcription start site region 156193
Tssr156194 19 36554719 to 36554731 12 + TSS region transcription start site region 156194
Tssr156195 19 36554742 to 36554773 31 + TSS region transcription start site region 156195
Tssr156196 19 36554774 to 36554793 19 + TSS region transcription start site region 156196
Hectd2os 19 36619418 to 36689479 70061 - lncRNA gene Hectd2, opposite strand
Tssr159045 19 36625998 to 36626035 37 - TSS region transcription start site region 159045
Tssr159046 19 36626045 to 36626061 16 - TSS region transcription start site region 159046