Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:3455766-3917301

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86 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Ppp6r3 19 3454928 to 3575749 120821 - protein coding gene protein phosphatase 6, regulatory subunit 3
Gm48696 19 3486090 to 3488014 1924 + unclassified non-coding RNA gene predicted gene, 48696
Gm23940 19 3490309 to 3490413 104 + snRNA gene predicted gene, 23940
Tssr157392 19 3510893 to 3510897 4 - TSS region transcription start site region 157392
Tssr157393 19 3521798 to 3521819 21 - TSS region transcription start site region 157393
Gm48683 19 3527104 to 3528613 1509 + antisense lncRNA gene predicted gene, 48683
Tssr157394 19 3533417 to 3533427 10 - TSS region transcription start site region 157394
Tssr157395 19 3549423 to 3549427 4 - TSS region transcription start site region 157395
Tssr157396 19 3554893 to 3554896 3 - TSS region transcription start site region 157396
Gm19205 19 3567551 to 3568448 897 + pseudogene predicted gene, 19205
Tssr5399 19 3570684 to 3570685 1 + TSS region transcription start site region 5399
Cpgi10368 19 3575091 to 3576347 1256 CpG island CpG island 10368
Tssr157397 19 3575702 to 3575705 3 - TSS region transcription start site region 157397
Tssr157398 19 3575708 to 3575756 48 - TSS region transcription start site region 157398
n-TAagc9 19 3576263 to 3576335 72 + tRNA gene nuclear encoded tRNA alanine 9 (anticodon AGC)
Lrp5 19 3584828 to 3686564 101736 - protein coding gene low density lipoprotein receptor-related protein 5
D19Mit68 19 3645155 to 3645286 131 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 68
Drinksac2 19 3645155 to 3645286 131 QTL drink saccharin 2
Tssr157399 19 3651906 to 3651930 24 - TSS region transcription start site region 157399
Tssr154185 19 3652038 to 3652045 7 + TSS region transcription start site region 154185
Cpgi10369 19 3685766 to 3687301 1535 CpG island CpG island 10369
Gm36672 19 3686410 to 3692435 6025 + protein coding gene predicted gene, 36672
Tssr5400 19 3686499 to 3686506 7 - TSS region transcription start site region 5400
Tssr157400 19 3686523 to 3686547 24 - TSS region transcription start site region 157400
Tssr157401 19 3686549 to 3686586 37 - TSS region transcription start site region 157401
Gm36608 19 3689236 to 3708226 18990 - lncRNA gene predicted gene, 36608
Cpgi10370 19 3707998 to 3708917 919 CpG island CpG island 10370
Tssr154186 19 3708287 to 3708395 108 + TSS region transcription start site region 154186
1810055G02Rik 19 3708333 to 3717881 9548 + protein coding gene RIKEN cDNA 1810055G02 gene
Gm36787 19 3712777 to 3744426 31649 - protein coding gene predicted gene, 36787
Cpgi10371 19 3719243 to 3719772 529 CpG island CpG island 10371
Gm36871 19 3719885 to 3721369 1484 + lncRNA gene predicted gene, 36871
Gm2141 19 3730432 to 3731047 615 - pseudogene predicted gene 2141
Tssr157402 19 3744374 to 3744392 18 - TSS region transcription start site region 157402
Cpgi10372 19 3767246 to 3769272 2026 CpG island CpG island 10372
Tssr154187 19 3767361 to 3767384 23 + TSS region transcription start site region 154187
Tssr154188 19 3767397 to 3767425 28 + TSS region transcription start site region 154188
Kmt5b 19 3767421 to 3818303 50882 + protein coding gene lysine methyltransferase 5B
Tssr154189 19 3767867 to 3767921 54 + TSS region transcription start site region 154189
Tssr154190 19 3767953 to 3767970 17 + TSS region transcription start site region 154190
Tssr154191 19 3768112 to 3768207 95 + TSS region transcription start site region 154191
Tssr157403 19 3768694 to 3768709 15 - TSS region transcription start site region 157403
Tssr154192 19 3769104 to 3769112 8 + TSS region transcription start site region 154192
Tssr154193 19 3787367 to 3787373 6 + TSS region transcription start site region 154193
Gm16066 19 3798615 to 3852419 53804 - unclassified non-coding RNA gene predicted gene 16066
Gm19209 19 3821562 to 3822385 823 - pseudogene predicted gene, 19209
Cpgi10373 19 3851047 to 3852700 1653 CpG island CpG island 10373
Chka 19 3851773 to 3894369 42596 + protein coding gene choline kinase alpha
Tssr154194 19 3851800 to 3851811 11 + TSS region transcription start site region 154194
Tssr154195 19 3851823 to 3851840 17 + TSS region transcription start site region 154195
Tssr154196 19 3851855 to 3851860 5 + TSS region transcription start site region 154196
Tssr154197 19 3851927 to 3851934 7 + TSS region transcription start site region 154197
Tssr154198 19 3851939 to 3851948 9 + TSS region transcription start site region 154198
Tssr154199 19 3851957 to 3851962 5 + TSS region transcription start site region 154199
Tssr154200 19 3851972 to 3851981 9 + TSS region transcription start site region 154200
Tssr154201 19 3896049 to 3896056 7 + TSS region transcription start site region 154201
Tcirg1 19 3896050 to 3907133 11083 - protein coding gene T cell, immune regulator 1, ATPase, H+ transporting, lysosomal V0 protein A3
Tssr157404 19 3897100 to 3897112 12 - TSS region transcription start site region 157404
Tssr157405 19 3897518 to 3897583 65 - TSS region transcription start site region 157405
Tssr157406 19 3898848 to 3898854 6 - TSS region transcription start site region 157406
Tssr157407 19 3899046 to 3899069 23 - TSS region transcription start site region 157407
Tssr157408 19 3900555 to 3900597 42 - TSS region transcription start site region 157408
Tssr157409 19 3900856 to 3900867 11 - TSS region transcription start site region 157409
Tssr157410 19 3902077 to 3902097 20 - TSS region transcription start site region 157410
Tssr157411 19 3903656 to 3903673 17 - TSS region transcription start site region 157411
Cpgi10374 19 3904082 to 3904387 305 CpG island CpG island 10374
Tssr157412 19 3904709 to 3904723 14 - TSS region transcription start site region 157412
Tssr157413 19 3905177 to 3905196 19 - TSS region transcription start site region 157413
Tssr157414 19 3905235 to 3905261 26 - TSS region transcription start site region 157414
Tssr157415 19 3905269 to 3905292 23 - TSS region transcription start site region 157415
Tssr157416 19 3907047 to 3907064 17 - TSS region transcription start site region 157416
Tssr157417 19 3907087 to 3907117 30 - TSS region transcription start site region 157417
Cpgi10375 19 3907184 to 3907352 168 CpG island CpG island 10375
Tssr154202 19 3907259 to 3907273 14 + TSS region transcription start site region 154202
Tssr154203 19 3907448 to 3907459 11 + TSS region transcription start site region 154203
Tssr157418 19 3907963 to 3907984 21 - TSS region transcription start site region 157418
Ndufs8 19 3908870 to 3912717 3847 - protein coding gene NADH:ubiquinone oxidoreductase core subunit S8
Tssr157419 19 3911753 to 3911759 6 - TSS region transcription start site region 157419
Tssr157420 19 3911770 to 3911790 20 - TSS region transcription start site region 157420
Tssr157421 19 3911801 to 3911846 45 - TSS region transcription start site region 157421
Cpgi10376 19 3912340 to 3913151 811 CpG island CpG island 10376
Tssr157422 19 3912711 to 3912722 11 - TSS region transcription start site region 157422
Tssr157423 19 3912733 to 3912779 46 - TSS region transcription start site region 157423
Tssr154204 19 3913041 to 3913059 18 + TSS region transcription start site region 154204
Aldh3b1 19 3913493 to 3929761 16268 - protein coding gene aldehyde dehydrogenase 3 family, member B1
Tssr157424 19 3914685 to 3914718 33 - TSS region transcription start site region 157424