Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:29825876-31269496

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90 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcsq3 19 27566000 to 31134000 3568000 QTL methacholine sensitivity QTL 3, final
Gm41832 19 29838453 to 29927333 88880 - lncRNA gene predicted gene, 41832
Tssr158790 19 29865222 to 29865257 35 - TSS region transcription start site region 158790
Gm36209 19 29877449 to 29884689 7240 + lncRNA gene predicted gene, 36209
Gm41831 19 29893703 to 29896235 2532 + lncRNA gene predicted gene, 41831
D19Dcr81 19 29913897 to 29913998 101 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 81
Tssr155911 19 29925107 to 29925122 15 + TSS region transcription start site region 155911
Il33 19 29925114 to 29960715 35601 + protein coding gene interleukin 33
Tssr158791 19 29926383 to 29926401 18 - TSS region transcription start site region 158791
Tssr155912 19 29945741 to 29945752 11 + TSS region transcription start site region 155912
Tssr155913 19 29945782 to 29945799 17 + TSS region transcription start site region 155913
Cpgi10745 19 29948553 to 29948821 268 CpG island CpG island 10745
Tssr155914 19 29951765 to 29951779 14 + TSS region transcription start site region 155914
Tssr155915 19 29951808 to 29951819 11 + TSS region transcription start site region 155915
Tssr155916 19 29959067 to 29959072 5 + TSS region transcription start site region 155916
Tssr155917 19 29959513 to 29959521 8 + TSS region transcription start site region 155917
Cpgi10746 19 29984890 to 29985119 229 CpG island CpG island 10746
Gm26046 19 29986099 to 29986264 165 + snRNA gene predicted gene, 26046
D19Dcr82 19 29990397 to 29990492 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 82
Tssr155918 19 30003777 to 30003813 36 + TSS region transcription start site region 155918
Trpd52l3 19 30003790 to 30006020 2230 + protein coding gene tumor protein D52-like 3
Tssr155919 19 30003820 to 30003834 14 + TSS region transcription start site region 155919
Cpgi10747 19 30029875 to 30031432 1557 CpG island CpG island 10747
Tssr158792 19 30030317 to 30030346 29 - TSS region transcription start site region 158792
Tssr155920 19 30030419 to 30030430 11 + TSS region transcription start site region 155920
Tssr155921 19 30030439 to 30030528 89 + TSS region transcription start site region 155921
Uhrf2 19 30030513 to 30093722 63209 + protein coding gene ubiquitin-like, containing PHD and RING finger domains 2
Tssr155922 19 30030615 to 30030634 19 + TSS region transcription start site region 155922
Tssr155923 19 30030642 to 30030653 11 + TSS region transcription start site region 155923
Tssr155924 19 30030663 to 30030672 9 + TSS region transcription start site region 155924
Tssr155925 19 30035500 to 30035535 35 + TSS region transcription start site region 155925
Tssr155926 19 30042759 to 30042787 28 + TSS region transcription start site region 155926
Tssr155927 19 30056997 to 30057011 14 + TSS region transcription start site region 155927
Tssr155928 19 30060380 to 30060384 4 + TSS region transcription start site region 155928
Gldc 19 30098449 to 30175418 76969 - protein coding gene glycine decarboxylase
Tssr158793 19 30100902 to 30100920 18 - TSS region transcription start site region 158793
Tssr158794 19 30105336 to 30105346 10 - TSS region transcription start site region 158794
Tssr158795 19 30115243 to 30115247 4 - TSS region transcription start site region 158795
Tssr158796 19 30115263 to 30115272 9 - TSS region transcription start site region 158796
Tssr158797 19 30115349 to 30115365 16 - TSS region transcription start site region 158797
Rpl31-ps20 19 30160620 to 30160997 377 + pseudogene ribosomal protein L31, pseudogene 20
9530025L08Rik 19 30164750 to 30165768 1018 unclassified gene RIKEN cDNA 9530025L08 gene
Cpgi10748 19 30167209 to 30167630 421 CpG island CpG island 10748
Cpgi10749 19 30174606 to 30175697 1091 CpG island CpG island 10749
Tssr158798 19 30175379 to 30175394 15 - TSS region transcription start site region 158798
Tssr158799 19 30175395 to 30175406 11 - TSS region transcription start site region 158799
Tssr158800 19 30175414 to 30175436 22 - TSS region transcription start site region 158800
Tssr158801 19 30175443 to 30175466 23 - TSS region transcription start site region 158801
Tssr158802 19 30175474 to 30175487 13 - TSS region transcription start site region 158802
Tssr155929 19 30185873 to 30185885 12 + TSS region transcription start site region 155929
Tssr155930 19 30232921 to 30232940 19 + TSS region transcription start site region 155930
Mbl2 19 30232928 to 30239685 6757 + protein coding gene mannose-binding lectin (protein C) 2
Gm24108 19 30261441 to 30261517 76 - miRNA gene predicted gene, 24108
Gm24883 19 30264880 to 30265160 280 + unclassified non-coding RNA gene predicted gene, 24883
Gm36006 19 30352005 to 30355618 3613 - pseudogene predicted gene, 36006
1700048J15Rik 19 30358216 to 30360679 2463 unclassified gene RIKEN cDNA 1700048J15 gene
Tssr158803 19 30363315 to 30363319 4 - TSS region transcription start site region 158803
Gm36319 19 30371465 to 30395327 23862 - lncRNA gene predicted gene, 36319
Gm17885 19 30490848 to 30491363 515 - pseudogene predicted gene, 17885
Ppp1r2-ps3 19 30538928 to 30539554 626 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 3
Cpgi10750 19 30539517 to 30539821 304 CpG island CpG island 10750
Tssr158804 19 30539700 to 30539726 26 - TSS region transcription start site region 158804
Dkk1 19 30545876 to 30549496 3620 - protein coding gene dickkopf WNT signaling pathway inhibitor 1
Cpgi10751 19 30548626 to 30549537 911 CpG island CpG island 10751
Tssr158805 19 30549516 to 30549520 4 - TSS region transcription start site region 158805
Prkg1 19 30567551 to 31765033 1197482 - protein coding gene protein kinase, cGMP-dependent, type I
Tssr158806 19 30574146 to 30574157 11 - TSS region transcription start site region 158806
Tssr158807 19 30574170 to 30574179 9 - TSS region transcription start site region 158807
Tssr155931 19 30587400 to 30587402 2 + TSS region transcription start site region 155931
Tssr158808 19 30625449 to 30625462 13 - TSS region transcription start site region 158808
Tssr158809 19 30625485 to 30625496 11 - TSS region transcription start site region 158809
Tssr158810 19 30625515 to 30625537 22 - TSS region transcription start site region 158810
Tssr158811 19 30674591 to 30674595 4 - TSS region transcription start site region 158811
Tssr158812 19 30681861 to 30681865 4 - TSS region transcription start site region 158812
Gm23426 19 30704081 to 30704398 317 + unclassified non-coding RNA gene predicted gene, 23426
D19Dcr83 19 30866577 to 30866672 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 83
Gm19023 19 30878834 to 30879352 518 + pseudogene predicted gene, 19023
Gm6642 19 30930380 to 30930962 582 - pseudogene predicted gene 6642
Tssr155932 19 30963863 to 30963872 9 + TSS region transcription start site region 155932
Tssr158813 19 31079696 to 31079697 1 - TSS region transcription start site region 158813
Cpgi10752 19 31082598 to 31083394 796 CpG island CpG island 10752
Cstf2t 19 31082841 to 31086590 3749 + protein coding gene cleavage stimulation factor, 3' pre-RNA subunit 2, tau
Tssr155933 19 31082882 to 31082902 20 + TSS region transcription start site region 155933
Tssr155934 19 31082982 to 31083046 64 + TSS region transcription start site region 155934
Tssr155935 19 31085545 to 31085549 4 + TSS region transcription start site region 155935
Tssr155936 19 31113926 to 31113943 17 + TSS region transcription start site region 155936
Tssr158814 19 31119933 to 31119942 9 - TSS region transcription start site region 158814
Tssr158815 19 31126097 to 31126106 9 - TSS region transcription start site region 158815
Gm41834 19 31127685 to 31137532 9847 + lncRNA gene predicted gene, 41834
8430431K14Rik 19 31213543 to 31216396 2853 - lncRNA gene RIKEN cDNA 8430431K14 gene