Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:29562551-32770033

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315 genes found. Result truncated to 200 rows.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Mcsq3 19 27566000 to 31134000 3568000 QTL methacholine sensitivity QTL 3, final
Ric1 19 29522282 to 29605921 83639 + protein coding gene RAB6A GEF complex partner 1
Tssr155904 19 29584050 to 29584077 27 + TSS region transcription start site region 155904
Tssr155905 19 29605751 to 29605766 15 + TSS region transcription start site region 155905
Tssr155906 19 29606219 to 29606223 4 + TSS region transcription start site region 155906
Ermp1 19 29609880 to 29648510 38630 - protein coding gene endoplasmic reticulum metallopeptidase 1
Tssr158780 19 29611605 to 29611624 19 - TSS region transcription start site region 158780
Tssr158781 19 29646159 to 29646198 39 - TSS region transcription start site region 158781
Tssr158782 19 29646481 to 29646486 5 - TSS region transcription start site region 158782
Cpgi10740 19 29647704 to 29648653 949 CpG island CpG island 10740
Tssr158783 19 29648342 to 29648353 11 - TSS region transcription start site region 158783
Tssr158784 19 29648355 to 29648425 70 - TSS region transcription start site region 158784
Tssr158785 19 29672721 to 29672728 7 - TSS region transcription start site region 158785
Gm36126 19 29682177 to 29684238 2061 - lncRNA gene predicted gene, 36126
Tssr155907 19 29697905 to 29697927 22 + TSS region transcription start site region 155907
Mlana 19 29697921 to 29708448 10527 + protein coding gene melan-A
Tssr155908 19 29703792 to 29703806 14 + TSS region transcription start site region 155908
Tssr155909 19 29703823 to 29703843 20 + TSS region transcription start site region 155909
Cpgi10741 19 29704616 to 29704873 257 CpG island CpG island 10741
Cpgi10742 19 29708054 to 29708323 269 CpG island CpG island 10742
9930021J03Rik 19 29714402 to 29805989 91587 - protein coding gene RIKEN cDNA 9930021J03 gene
Tssr158786 19 29787306 to 29787312 6 - TSS region transcription start site region 158786
Cpgi10743 19 29804882 to 29806711 1829 CpG island CpG island 10743
Tssr155910 19 29805269 to 29805293 24 + TSS region transcription start site region 155910
Tssr5475 19 29806180 to 29806207 27 + TSS region transcription start site region 5475
Tssr158787 19 29806384 to 29806435 51 - TSS region transcription start site region 158787
Tssr158788 19 29806531 to 29806552 21 - TSS region transcription start site region 158788
Ranbp6 19 29808400 to 29812974 4574 - protein coding gene RAN binding protein 6
Cpgi10744 19 29812740 to 29813258 518 CpG island CpG island 10744
Tssr158789 19 29812952 to 29812974 22 - TSS region transcription start site region 158789
Tssr5476 19 29812982 to 29812991 9 - TSS region transcription start site region 5476
Gm41832 19 29838453 to 29927333 88880 - lncRNA gene predicted gene, 41832
Tssr158790 19 29865222 to 29865257 35 - TSS region transcription start site region 158790
Gm36209 19 29877449 to 29884689 7240 + lncRNA gene predicted gene, 36209
Gm41831 19 29893703 to 29896235 2532 + lncRNA gene predicted gene, 41831
D19Dcr81 19 29913897 to 29913998 101 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 81
Tssr155911 19 29925107 to 29925122 15 + TSS region transcription start site region 155911
Il33 19 29925114 to 29960715 35601 + protein coding gene interleukin 33
Tssr158791 19 29926383 to 29926401 18 - TSS region transcription start site region 158791
Tssr155912 19 29945741 to 29945752 11 + TSS region transcription start site region 155912
Tssr155913 19 29945782 to 29945799 17 + TSS region transcription start site region 155913
Cpgi10745 19 29948553 to 29948821 268 CpG island CpG island 10745
Tssr155914 19 29951765 to 29951779 14 + TSS region transcription start site region 155914
Tssr155915 19 29951808 to 29951819 11 + TSS region transcription start site region 155915
Tssr155916 19 29959067 to 29959072 5 + TSS region transcription start site region 155916
Tssr155917 19 29959513 to 29959521 8 + TSS region transcription start site region 155917
Cpgi10746 19 29984890 to 29985119 229 CpG island CpG island 10746
Gm26046 19 29986099 to 29986264 165 + snRNA gene predicted gene, 26046
D19Dcr82 19 29990397 to 29990492 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 82
Tssr155918 19 30003777 to 30003813 36 + TSS region transcription start site region 155918
Trpd52l3 19 30003790 to 30006020 2230 + protein coding gene tumor protein D52-like 3
Tssr155919 19 30003820 to 30003834 14 + TSS region transcription start site region 155919
Cpgi10747 19 30029875 to 30031432 1557 CpG island CpG island 10747
Tssr158792 19 30030317 to 30030346 29 - TSS region transcription start site region 158792
Tssr155920 19 30030419 to 30030430 11 + TSS region transcription start site region 155920
Tssr155921 19 30030439 to 30030528 89 + TSS region transcription start site region 155921
Uhrf2 19 30030513 to 30093722 63209 + protein coding gene ubiquitin-like, containing PHD and RING finger domains 2
Tssr155922 19 30030615 to 30030634 19 + TSS region transcription start site region 155922
Tssr155923 19 30030642 to 30030653 11 + TSS region transcription start site region 155923
Tssr155924 19 30030663 to 30030672 9 + TSS region transcription start site region 155924
Tssr155925 19 30035500 to 30035535 35 + TSS region transcription start site region 155925
Tssr155926 19 30042759 to 30042787 28 + TSS region transcription start site region 155926
Tssr155927 19 30056997 to 30057011 14 + TSS region transcription start site region 155927
Tssr155928 19 30060380 to 30060384 4 + TSS region transcription start site region 155928
Gldc 19 30098449 to 30175418 76969 - protein coding gene glycine decarboxylase
Tssr158793 19 30100902 to 30100920 18 - TSS region transcription start site region 158793
Tssr158794 19 30105336 to 30105346 10 - TSS region transcription start site region 158794
Tssr158795 19 30115243 to 30115247 4 - TSS region transcription start site region 158795
Tssr158796 19 30115263 to 30115272 9 - TSS region transcription start site region 158796
Tssr158797 19 30115349 to 30115365 16 - TSS region transcription start site region 158797
Rpl31-ps20 19 30160620 to 30160997 377 + pseudogene ribosomal protein L31, pseudogene 20
9530025L08Rik 19 30164750 to 30165768 1018 unclassified gene RIKEN cDNA 9530025L08 gene
Cpgi10748 19 30167209 to 30167630 421 CpG island CpG island 10748
Cpgi10749 19 30174606 to 30175697 1091 CpG island CpG island 10749
Tssr158798 19 30175379 to 30175394 15 - TSS region transcription start site region 158798
Tssr158799 19 30175395 to 30175406 11 - TSS region transcription start site region 158799
Tssr158800 19 30175414 to 30175436 22 - TSS region transcription start site region 158800
Tssr158801 19 30175443 to 30175466 23 - TSS region transcription start site region 158801
Tssr158802 19 30175474 to 30175487 13 - TSS region transcription start site region 158802
Tssr155929 19 30185873 to 30185885 12 + TSS region transcription start site region 155929
Tssr155930 19 30232921 to 30232940 19 + TSS region transcription start site region 155930
Mbl2 19 30232928 to 30239685 6757 + protein coding gene mannose-binding lectin (protein C) 2
Gm24108 19 30261441 to 30261517 76 - miRNA gene predicted gene, 24108
Gm24883 19 30264880 to 30265160 280 + unclassified non-coding RNA gene predicted gene, 24883
Gm36006 19 30352005 to 30355618 3613 - pseudogene predicted gene, 36006
1700048J15Rik 19 30358216 to 30360679 2463 unclassified gene RIKEN cDNA 1700048J15 gene
Tssr158803 19 30363315 to 30363319 4 - TSS region transcription start site region 158803
Gm36319 19 30371465 to 30395327 23862 - lncRNA gene predicted gene, 36319
Gm17885 19 30490848 to 30491363 515 - pseudogene predicted gene, 17885
Ppp1r2-ps3 19 30538928 to 30539554 626 - pseudogene protein phosphatase 1, regulatory (inhibitor) subunit 2, pseudogene 3
Cpgi10750 19 30539517 to 30539821 304 CpG island CpG island 10750
Tssr158804 19 30539700 to 30539726 26 - TSS region transcription start site region 158804
Dkk1 19 30545876 to 30549496 3620 - protein coding gene dickkopf WNT signaling pathway inhibitor 1
Cpgi10751 19 30548626 to 30549537 911 CpG island CpG island 10751
Tssr158805 19 30549516 to 30549520 4 - TSS region transcription start site region 158805
Prkg1 19 30567551 to 31765033 1197482 - protein coding gene protein kinase, cGMP-dependent, type I
Tssr158806 19 30574146 to 30574157 11 - TSS region transcription start site region 158806
Tssr158807 19 30574170 to 30574179 9 - TSS region transcription start site region 158807
Tssr155931 19 30587400 to 30587402 2 + TSS region transcription start site region 155931
Tssr158808 19 30625449 to 30625462 13 - TSS region transcription start site region 158808
Tssr158809 19 30625485 to 30625496 11 - TSS region transcription start site region 158809
Tssr158810 19 30625515 to 30625537 22 - TSS region transcription start site region 158810
Tssr158811 19 30674591 to 30674595 4 - TSS region transcription start site region 158811
Tssr158812 19 30681861 to 30681865 4 - TSS region transcription start site region 158812
Gm23426 19 30704081 to 30704398 317 + unclassified non-coding RNA gene predicted gene, 23426
D19Dcr83 19 30866577 to 30866672 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 83
Gm19023 19 30878834 to 30879352 518 + pseudogene predicted gene, 19023
Gm6642 19 30930380 to 30930962 582 - pseudogene predicted gene 6642
Tssr155932 19 30963863 to 30963872 9 + TSS region transcription start site region 155932
Tssr158813 19 31079696 to 31079697 1 - TSS region transcription start site region 158813
Cpgi10752 19 31082598 to 31083394 796 CpG island CpG island 10752
Cstf2t 19 31082841 to 31086590 3749 + protein coding gene cleavage stimulation factor, 3' pre-RNA subunit 2, tau
Tssr155933 19 31082882 to 31082902 20 + TSS region transcription start site region 155933
Tssr155934 19 31082982 to 31083046 64 + TSS region transcription start site region 155934
Tssr155935 19 31085545 to 31085549 4 + TSS region transcription start site region 155935
Tssr155936 19 31113926 to 31113943 17 + TSS region transcription start site region 155936
Tssr158814 19 31119933 to 31119942 9 - TSS region transcription start site region 158814
Tssr158815 19 31126097 to 31126106 9 - TSS region transcription start site region 158815
Gm41834 19 31127685 to 31137532 9847 + lncRNA gene predicted gene, 41834
8430431K14Rik 19 31213543 to 31216396 2853 - lncRNA gene RIKEN cDNA 8430431K14 gene
D19Dcr84 19 31301441 to 31301536 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 84
Tssr158816 19 31351460 to 31351470 10 - TSS region transcription start site region 158816
Tssr158817 19 31451561 to 31451562 1 - TSS region transcription start site region 158817
9030425L15Rik 19 31505321 to 31507368 2047 unclassified gene RIKEN cDNA 9030425L15 gene
Tssr158818 19 31511010 to 31511015 5 - TSS region transcription start site region 158818
9330185G11Rik 19 31542569 to 31550539 7970 unclassified gene RIKEN cDNA 9330185G11 gene
Tssr158819 19 31624502 to 31624503 1 - TSS region transcription start site region 158819
D19Ertd200e 19 31649317 to 31649534 217 DNA segment DNA segment, Chr 19, ERATO Doi 200, expressed
Cpgi10753 19 31663757 to 31664993 1236 CpG island CpG island 10753
Tssr158820 19 31664356 to 31664372 16 - TSS region transcription start site region 158820
Tssr158821 19 31664375 to 31664443 68 - TSS region transcription start site region 158821
Tssr158822 19 31664606 to 31664618 12 - TSS region transcription start site region 158822
Tssr158823 19 31664654 to 31664690 36 - TSS region transcription start site region 158823
Cpgi10754 19 31762754 to 31763030 276 CpG island CpG island 10754
Cpgi10755 19 31764020 to 31765052 1032 CpG island CpG island 10755
Tssr158824 19 31764963 to 31764990 27 - TSS region transcription start site region 158824
Tssr158825 19 31765000 to 31765015 15 - TSS region transcription start site region 158825
Tssr158826 19 31765027 to 31765079 52 - TSS region transcription start site region 158826
Tssr158827 19 31765238 to 31765283 45 - TSS region transcription start site region 158827
Tssr155937 19 31868754 to 31868787 33 + TSS region transcription start site region 155937
A1cf 19 31868764 to 31948573 79809 + protein coding gene APOBEC1 complementation factor
Tssr155938 19 31868805 to 31868820 15 + TSS region transcription start site region 155938
Tssr155939 19 31873530 to 31873543 13 + TSS region transcription start site region 155939
Tssr155940 19 31881954 to 31881973 19 + TSS region transcription start site region 155940
Tssr5477 19 31910374 to 31910380 6 - TSS region transcription start site region 5477
Tssr158828 19 31910421 to 31910435 14 - TSS region transcription start site region 158828
Tssr158829 19 31910439 to 31910454 15 - TSS region transcription start site region 158829
Tssr158830 19 31910465 to 31910478 13 - TSS region transcription start site region 158830
Tssr155941 19 31910760 to 31910772 12 + TSS region transcription start site region 155941
Gm19241 19 31913644 to 31914551 907 + pseudogene predicted gene, 19241
Tssr158831 19 31914076 to 31914082 6 - TSS region transcription start site region 158831
Tssr155942 19 31914329 to 31914335 6 + TSS region transcription start site region 155942
Tssr5478 19 31932357 to 31932358 1 + TSS region transcription start site region 5478
Moe2 19 31945616 to 31945738 122 QTL modifier of epilepsy 2
D19Mit135 19 31945616 to 31945738 122 DNA segment DNA Segment, Chr 19, Massachusetts Institute of Technology 135
Tssr155943 19 31949779 to 31949794 15 + TSS region transcription start site region 155943
Tssr155944 19 31949953 to 31949965 12 + TSS region transcription start site region 155944
Tssr155945 19 31950012 to 31950024 12 + TSS region transcription start site region 155945
9130016M20Rik 19 31950083 to 31952362 2279 unclassified non-coding RNA gene RIKEN cDNA 9130016M20 gene
Tssr155946 19 31950615 to 31950628 13 + TSS region transcription start site region 155946
Tssr155947 19 31950775 to 31950803 28 + TSS region transcription start site region 155947
Tssr155948 19 31951054 to 31951072 18 + TSS region transcription start site region 155948
Asah2 19 31984654 to 32061469 76815 - protein coding gene N-acylsphingosine amidohydrolase 2
Tssr158832 19 32061330 to 32061346 16 - TSS region transcription start site region 158832
Tssr158833 19 32061353 to 32061362 9 - TSS region transcription start site region 158833
Tssr158834 19 32061366 to 32061381 15 - TSS region transcription start site region 158834
Tssr158835 19 32061384 to 32061413 29 - TSS region transcription start site region 158835
Tssr158836 19 32061438 to 32061465 27 - TSS region transcription start site region 158836
Tssr158837 19 32061480 to 32061493 13 - TSS region transcription start site region 158837
Tssr158838 19 32068735 to 32068757 22 - TSS region transcription start site region 158838
Tssr158839 19 32068770 to 32068779 9 - TSS region transcription start site region 158839
Tssr158840 19 32068803 to 32068812 9 - TSS region transcription start site region 158840
Tssr158841 19 32068823 to 32068836 13 - TSS region transcription start site region 158841
Tssr158842 19 32068859 to 32068862 3 - TSS region transcription start site region 158842
Tssr158843 19 32069674 to 32069681 7 - TSS region transcription start site region 158843
Gm8943 19 32073335 to 32074926 1591 + pseudogene predicted gene 8943
Tssr158844 19 32102850 to 32102861 11 - TSS region transcription start site region 158844
Tssr158845 19 32103072 to 32103092 20 - TSS region transcription start site region 158845
Tssr158846 19 32103106 to 32103154 48 - TSS region transcription start site region 158846
Tssr158847 19 32103160 to 32103169 9 - TSS region transcription start site region 158847
Cpgi10756 19 32107944 to 32108325 381 CpG island CpG island 10756
Tssr158848 19 32108099 to 32108110 11 - TSS region transcription start site region 158848
Tssr158849 19 32108132 to 32108220 88 - TSS region transcription start site region 158849
Sgms1 19 32122727 to 32389712 266985 - protein coding gene sphingomyelin synthase 1
Tssr158850 19 32151287 to 32151292 5 - TSS region transcription start site region 158850
Tssr158851 19 32155351 to 32155365 14 - TSS region transcription start site region 158851
Tssr5479 19 32172544 to 32172546 2 - TSS region transcription start site region 5479
Tssr155949 19 32172700 to 32172747 47 + TSS region transcription start site region 155949
Tssr158852 19 32181325 to 32181332 7 - TSS region transcription start site region 158852
Tssr158853 19 32182143 to 32182156 13 - TSS region transcription start site region 158853
Tssr158854 19 32182183 to 32182194 11 - TSS region transcription start site region 158854
Tssr158855 19 32186533 to 32186540 7 - TSS region transcription start site region 158855
Tssr158856 19 32196363 to 32196377 14 - TSS region transcription start site region 158856
Tssr158857 19 32196393 to 32196411 18 - TSS region transcription start site region 158857
Tssr158858 19 32196423 to 32196442 19 - TSS region transcription start site region 158858
Tssr158859 19 32210133 to 32210144 11 - TSS region transcription start site region 158859
Cpgi10757 19 32210656 to 32211130 474 CpG island CpG island 10757
Tssr158860 19 32210969 to 32211002 33 - TSS region transcription start site region 158860
Tssr158861 19 32211016 to 32211036 20 - TSS region transcription start site region 158861
Tssr158862 19 32223785 to 32223820 35 - TSS region transcription start site region 158862