Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:29470741-30420752

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111 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Pdcd1lg2 19 29410919 to 29471157 60238 + protein coding gene programmed cell death 1 ligand 2
Tssr155892 19 29470759 to 29470770 11 + TSS region transcription start site region 155892
Tssr155893 19 29470797 to 29470819 22 + TSS region transcription start site region 155893
Tssr155894 19 29474234 to 29474267 33 + TSS region transcription start site region 155894
Tssr155895 19 29485739 to 29485753 14 + TSS region transcription start site region 155895
Tssr158771 19 29486568 to 29486571 3 - TSS region transcription start site region 158771
Tssr155896 19 29486949 to 29486967 18 + TSS region transcription start site region 155896
Tssr158772 19 29486989 to 29487004 15 - TSS region transcription start site region 158772
Tssr158773 19 29488529 to 29488568 39 - TSS region transcription start site region 158773
Tssr158774 19 29488579 to 29488592 13 - TSS region transcription start site region 158774
Tssr155897 19 29488692 to 29488708 16 + TSS region transcription start site region 155897
Tssr158775 19 29499192 to 29499224 32 - TSS region transcription start site region 158775
Tssr155898 19 29499334 to 29499347 13 + TSS region transcription start site region 155898
Tssr155899 19 29499439 to 29499442 3 + TSS region transcription start site region 155899
Tssr158776 19 29500361 to 29500384 23 - TSS region transcription start site region 158776
A930007I19Rik 19 29503663 to 29521987 18324 - lincRNA gene RIKEN cDNA A930007I19 gene
Cpgi10739 19 29521697 to 29523494 1797 CpG island CpG island 10739
Tssr158777 19 29522171 to 29522191 20 - TSS region transcription start site region 158777
Tssr158778 19 29522192 to 29522216 24 - TSS region transcription start site region 158778
Tssr155900 19 29522263 to 29522341 78 + TSS region transcription start site region 155900
Ric1 19 29522282 to 29605921 83639 + protein coding gene RAB6A GEF complex partner 1
Tssr155901 19 29522380 to 29522391 11 + TSS region transcription start site region 155901
Tssr155902 19 29522412 to 29522423 11 + TSS region transcription start site region 155902
Tssr158779 19 29523166 to 29523175 9 - TSS region transcription start site region 158779
Tssr155903 19 29537161 to 29537170 9 + TSS region transcription start site region 155903
Tssr155904 19 29584050 to 29584077 27 + TSS region transcription start site region 155904
Tssr155905 19 29605751 to 29605766 15 + TSS region transcription start site region 155905
Tssr155906 19 29606219 to 29606223 4 + TSS region transcription start site region 155906
Ermp1 19 29609880 to 29648510 38630 - protein coding gene endoplasmic reticulum metallopeptidase 1
Tssr158780 19 29611605 to 29611624 19 - TSS region transcription start site region 158780
Tssr158781 19 29646159 to 29646198 39 - TSS region transcription start site region 158781
Tssr158782 19 29646481 to 29646486 5 - TSS region transcription start site region 158782
Cpgi10740 19 29647704 to 29648653 949 CpG island CpG island 10740
Tssr158783 19 29648342 to 29648353 11 - TSS region transcription start site region 158783
Tssr158784 19 29648355 to 29648425 70 - TSS region transcription start site region 158784
Tssr158785 19 29672721 to 29672728 7 - TSS region transcription start site region 158785
Gm36126 19 29682177 to 29684238 2061 - lncRNA gene predicted gene, 36126
Tssr155907 19 29697905 to 29697927 22 + TSS region transcription start site region 155907
Mlana 19 29697921 to 29708448 10527 + protein coding gene melan-A
Tssr155908 19 29703792 to 29703806 14 + TSS region transcription start site region 155908
Tssr155909 19 29703823 to 29703843 20 + TSS region transcription start site region 155909
Cpgi10741 19 29704616 to 29704873 257 CpG island CpG island 10741
Cpgi10742 19 29708054 to 29708323 269 CpG island CpG island 10742
9930021J03Rik 19 29714402 to 29805989 91587 - protein coding gene RIKEN cDNA 9930021J03 gene
Tssr158786 19 29787306 to 29787312 6 - TSS region transcription start site region 158786
Cpgi10743 19 29804882 to 29806711 1829 CpG island CpG island 10743
Tssr155910 19 29805269 to 29805293 24 + TSS region transcription start site region 155910
Tssr5475 19 29806180 to 29806207 27 + TSS region transcription start site region 5475
Tssr158787 19 29806384 to 29806435 51 - TSS region transcription start site region 158787
Tssr158788 19 29806531 to 29806552 21 - TSS region transcription start site region 158788
Ranbp6 19 29808400 to 29812974 4574 - protein coding gene RAN binding protein 6
Cpgi10744 19 29812740 to 29813258 518 CpG island CpG island 10744
Tssr158789 19 29812952 to 29812974 22 - TSS region transcription start site region 158789
Tssr5476 19 29812982 to 29812991 9 - TSS region transcription start site region 5476
Gm41832 19 29838453 to 29927333 88880 - lncRNA gene predicted gene, 41832
Tssr158790 19 29865222 to 29865257 35 - TSS region transcription start site region 158790
Gm36209 19 29877449 to 29884689 7240 + lncRNA gene predicted gene, 36209
Gm41831 19 29893703 to 29896235 2532 + lncRNA gene predicted gene, 41831
D19Dcr81 19 29913897 to 29913998 101 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 81
Tssr155911 19 29925107 to 29925122 15 + TSS region transcription start site region 155911
Il33 19 29925114 to 29960715 35601 + protein coding gene interleukin 33
Tssr158791 19 29926383 to 29926401 18 - TSS region transcription start site region 158791
Tssr155912 19 29945741 to 29945752 11 + TSS region transcription start site region 155912
Tssr155913 19 29945782 to 29945799 17 + TSS region transcription start site region 155913
Cpgi10745 19 29948553 to 29948821 268 CpG island CpG island 10745
Tssr155914 19 29951765 to 29951779 14 + TSS region transcription start site region 155914
Tssr155915 19 29951808 to 29951819 11 + TSS region transcription start site region 155915
Tssr155916 19 29959067 to 29959072 5 + TSS region transcription start site region 155916
Tssr155917 19 29959513 to 29959521 8 + TSS region transcription start site region 155917
Cpgi10746 19 29984890 to 29985119 229 CpG island CpG island 10746
Gm26046 19 29986099 to 29986264 165 + snRNA gene predicted gene, 26046
D19Dcr82 19 29990397 to 29990492 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 82
Tssr155918 19 30003777 to 30003813 36 + TSS region transcription start site region 155918
Trpd52l3 19 30003790 to 30006020 2230 + protein coding gene tumor protein D52-like 3
Tssr155919 19 30003820 to 30003834 14 + TSS region transcription start site region 155919
Cpgi10747 19 30029875 to 30031432 1557 CpG island CpG island 10747
Tssr158792 19 30030317 to 30030346 29 - TSS region transcription start site region 158792
Tssr155920 19 30030419 to 30030430 11 + TSS region transcription start site region 155920
Tssr155921 19 30030439 to 30030528 89 + TSS region transcription start site region 155921
Uhrf2 19 30030513 to 30093722 63209 + protein coding gene ubiquitin-like, containing PHD and RING finger domains 2
Tssr155922 19 30030615 to 30030634 19 + TSS region transcription start site region 155922
Tssr155923 19 30030642 to 30030653 11 + TSS region transcription start site region 155923
Tssr155924 19 30030663 to 30030672 9 + TSS region transcription start site region 155924
Tssr155925 19 30035500 to 30035535 35 + TSS region transcription start site region 155925
Tssr155926 19 30042759 to 30042787 28 + TSS region transcription start site region 155926
Tssr155927 19 30056997 to 30057011 14 + TSS region transcription start site region 155927
Tssr155928 19 30060380 to 30060384 4 + TSS region transcription start site region 155928
Gldc 19 30098449 to 30175418 76969 - protein coding gene glycine decarboxylase
Tssr158793 19 30100902 to 30100920 18 - TSS region transcription start site region 158793
Tssr158794 19 30105336 to 30105346 10 - TSS region transcription start site region 158794
Tssr158795 19 30115243 to 30115247 4 - TSS region transcription start site region 158795
Tssr158796 19 30115263 to 30115272 9 - TSS region transcription start site region 158796
Tssr158797 19 30115349 to 30115365 16 - TSS region transcription start site region 158797
Rpl31-ps20 19 30160620 to 30160997 377 + pseudogene ribosomal protein L31, pseudogene 20
9530025L08Rik 19 30164750 to 30165768 1018 unclassified gene RIKEN cDNA 9530025L08 gene
Cpgi10748 19 30167209 to 30167630 421 CpG island CpG island 10748
Cpgi10749 19 30174606 to 30175697 1091 CpG island CpG island 10749
Tssr158798 19 30175379 to 30175394 15 - TSS region transcription start site region 158798
Tssr158799 19 30175395 to 30175406 11 - TSS region transcription start site region 158799
Tssr158800 19 30175414 to 30175436 22 - TSS region transcription start site region 158800
Tssr158801 19 30175443 to 30175466 23 - TSS region transcription start site region 158801
Tssr158802 19 30175474 to 30175487 13 - TSS region transcription start site region 158802
Tssr155929 19 30185873 to 30185885 12 + TSS region transcription start site region 155929
Tssr155930 19 30232921 to 30232940 19 + TSS region transcription start site region 155930
Mbl2 19 30232928 to 30239685 6757 + protein coding gene mannose-binding lectin (protein C) 2
Gm24108 19 30261441 to 30261517 76 - miRNA gene predicted gene, 24108
Gm24883 19 30264880 to 30265160 280 + unclassified non-coding RNA gene predicted gene, 24883
Gm36006 19 30352005 to 30355618 3613 - pseudogene predicted gene, 36006
1700048J15Rik 19 30358216 to 30360679 2463 unclassified gene RIKEN cDNA 1700048J15 gene
Tssr158803 19 30363315 to 30363319 4 - TSS region transcription start site region 158803
Gm36319 19 30371465 to 30395327 23862 - lncRNA gene predicted gene, 36319