Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

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Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:28390166-29358960

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136 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Glis3 19 28258851 to 28680077 421226 - protein coding gene GLIS family zinc finger 3
Tssr5471 19 28402405 to 28402409 4 + TSS region transcription start site region 5471
Tssr158725 19 28486291 to 28486294 3 - TSS region transcription start site region 158725
D19Mit98 19 28493507 to 28493628 121 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 98
D19Dcr10 19 28555884 to 28555979 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 10
Tssr158726 19 28560975 to 28560987 12 - TSS region transcription start site region 158726
Tssr158727 19 28561017 to 28561025 8 - TSS region transcription start site region 158727
Tssr158728 19 28561066 to 28561083 17 - TSS region transcription start site region 158728
Tssr155748 19 28578188 to 28578202 14 + TSS region transcription start site region 155748
4933413C19Rik 19 28580533 to 28583294 2761 - sense intronic lncRNA gene RIKEN cDNA 4933413C19 gene
Cpgi10727 19 28678088 to 28678510 422 CpG island CpG island 10727
D930032P07Rik 19 28678224 to 28720027 41803 + lincRNA gene RIKEN cDNA D930032P07 gene
Cpgi10728 19 28678785 to 28680407 1622 CpG island CpG island 10728
Tssr158729 19 28680110 to 28680122 12 - TSS region transcription start site region 158729
Tssr158730 19 28680132 to 28680143 11 - TSS region transcription start site region 158730
Tssr158731 19 28680165 to 28680183 18 - TSS region transcription start site region 158731
Tssr158732 19 28680202 to 28680267 65 - TSS region transcription start site region 158732
D19Dcr11 19 28691324 to 28691419 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 11
Rps15a-ps2 19 28742159 to 28742551 392 - pseudogene ribosomal protein S15A, pseudogene 2
Tssr158733 19 28742578 to 28742588 10 - TSS region transcription start site region 158733
Gm35922 19 28760033 to 28788185 28152 + lncRNA gene predicted gene, 35922
Gm6788 19 28763161 to 28763430 269 - pseudogene predicted gene 6788
Tssr158734 19 28763537 to 28763540 3 - TSS region transcription start site region 158734
Gm26942 19 28812406 to 28813202 796 - pseudogene predicted gene, 26942
Cpgi10729 19 28834608 to 28835796 1188 CpG island CpG island 10729
Tssr155749 19 28835101 to 28835116 15 + TSS region transcription start site region 155749
Tssr155750 19 28835124 to 28835142 18 + TSS region transcription start site region 155750
Slc1a1 19 28835166 to 28913960 78794 + protein coding gene solute carrier family 1 (neuronal/epithelial high affinity glutamate transporter, system Xag), member 1
Gm5822 19 28862330 to 28863707 1377 - pseudogene predicted gene 5822
Tssr158735 19 28863766 to 28863767 1 - TSS region transcription start site region 158735
Tssr155751 19 28893040 to 28893043 3 + TSS region transcription start site region 155751
4430402I18Rik 19 28906829 to 28968356 61527 - protein coding gene RIKEN cDNA 4430402I18 gene
Tssr158736 19 28929126 to 28929131 5 - TSS region transcription start site region 158736
Tssr158737 19 28929223 to 28929237 14 - TSS region transcription start site region 158737
D19Dcr12 19 28955176 to 28955274 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 12
Cpgi10730 19 28963638 to 28964931 1293 CpG island CpG island 10730
Tssr155752 19 28963851 to 28963877 26 + TSS region transcription start site region 155752
Tssr158738 19 28963863 to 28963893 30 - TSS region transcription start site region 158738
Tssr155753 19 28963892 to 28963969 77 + TSS region transcription start site region 155753
Plpp6 19 28963953 to 28966811 2858 + protein coding gene phospholipid phosphatase 6
Tssr158739 19 28967794 to 28967852 58 - TSS region transcription start site region 158739
Gm3621 19 28973307 to 28974077 770 + pseudogene predicted gene 3621
Gm4844 19 28974550 to 28975633 1083 - pseudogene predicted gene 4844
Cpgi10731 19 28975037 to 28975460 423 CpG island CpG island 10731
Tssr158740 19 28975634 to 28975644 10 - TSS region transcription start site region 158740
Tssr158741 19 28975654 to 28975667 13 - TSS region transcription start site region 158741
Cpgi10732 19 28990153 to 28991203 1050 CpG island CpG island 10732
Tssr155754 19 28990347 to 28990373 26 + TSS region transcription start site region 155754
Cdc37l1 19 28990352 to 29026681 36329 + protein coding gene cell division cycle 37-like 1
Tssr155755 19 28990375 to 28990392 17 + TSS region transcription start site region 155755
Tssr155756 19 28990453 to 28990466 13 + TSS region transcription start site region 155756
Tssr155757 19 28990476 to 28990497 21 + TSS region transcription start site region 155757
Tssr158742 19 28990894 to 28990929 35 - TSS region transcription start site region 158742
Tssr5472 19 28995180 to 28995195 15 + TSS region transcription start site region 5472
Tssr155758 19 28995203 to 28995213 10 + TSS region transcription start site region 155758
Gm10136 19 29003408 to 29003842 434 - pseudogene predicted pseudogene 10136
Ak3 19 29020833 to 29047961 27128 - protein coding gene adenylate kinase 3
Tssr158743 19 29021305 to 29021324 19 - TSS region transcription start site region 158743
Tssr158744 19 29021863 to 29021903 40 - TSS region transcription start site region 158744
D19Dcr13 19 29042415 to 29042510 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 13
Tssr155759 19 29046483 to 29046513 30 + TSS region transcription start site region 155759
Cpgi10733 19 29047385 to 29048306 921 CpG island CpG island 10733
1700018L02Rik 19 29047483 to 29048729 1246 + antisense lncRNA gene RIKEN cDNA 1700018L02 gene
Tssr155760 19 29047489 to 29047527 38 + TSS region transcription start site region 155760
Tssr155761 19 29047529 to 29047534 5 + TSS region transcription start site region 155761
Tssr155762 19 29047535 to 29047580 45 + TSS region transcription start site region 155762
Tssr155763 19 29047585 to 29047594 9 + TSS region transcription start site region 155763
Tssr155764 19 29047601 to 29047607 6 + TSS region transcription start site region 155764
Tssr158745 19 29047832 to 29047844 12 - TSS region transcription start site region 158745
Tssr158746 19 29047847 to 29047977 130 - TSS region transcription start site region 158746
Tssr158747 19 29048076 to 29048081 5 - TSS region transcription start site region 158747
Tssr155765 19 29048198 to 29048207 9 + TSS region transcription start site region 155765
Tssr155766 19 29067234 to 29067245 11 + TSS region transcription start site region 155766
Tssr155767 19 29067271 to 29067297 26 + TSS region transcription start site region 155767
Gm9895 19 29067301 to 29069503 2202 + lncRNA gene predicted gene 9895
Tssr155768 19 29067307 to 29067327 20 + TSS region transcription start site region 155768
Tssr155769 19 29067341 to 29067353 12 + TSS region transcription start site region 155769
Tssr5473 19 29068707 to 29068713 6 + TSS region transcription start site region 5473
Tssr155770 19 29081736 to 29081752 16 + TSS region transcription start site region 155770
Cpgi10734 19 29100830 to 29101938 1108 CpG island CpG island 10734
Tssr5474 19 29101147 to 29101153 6 - TSS region transcription start site region 5474
Tssr155771 19 29101365 to 29101376 11 + TSS region transcription start site region 155771
Rcl1 19 29101375 to 29143843 42468 + protein coding gene RNA terminal phosphate cyclase-like 1
Tssr155772 19 29101387 to 29101438 51 + TSS region transcription start site region 155772
Tssr155773 19 29101441 to 29101452 11 + TSS region transcription start site region 155773
Tssr155774 19 29101484 to 29101497 13 + TSS region transcription start site region 155774
Tssr155775 19 29121799 to 29121802 3 + TSS region transcription start site region 155775
Tssr155776 19 29126746 to 29126763 17 + TSS region transcription start site region 155776
Mir101b 19 29135279 to 29135375 96 + miRNA gene microRNA 101b
Tssr155777 19 29151712 to 29151716 4 + TSS region transcription start site region 155777
D19Dcr79 19 29154378 to 29154476 98 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 79
Tssr155778 19 29159982 to 29159993 11 + TSS region transcription start site region 155778
Gm5518 19 29160118 to 29160765 647 + pseudogene predicted gene 5518
Tssr158748 19 29176543 to 29176555 12 - TSS region transcription start site region 158748
D19Mit57 19 29197188 to 29197311 123 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 57
D19Mit39 19 29209335 to 29209590 255 DNA segment DNA segment, Chr 19, Massachusetts Institute of Technology 39
D19Dcr80 19 29211361 to 29211456 95 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 80
Gm41829 19 29238057 to 29242703 4646 - lncRNA gene predicted gene, 41829
Tssr155779 19 29250625 to 29250638 13 + TSS region transcription start site region 155779
Cpgi10735 19 29250995 to 29252455 1460 CpG island CpG island 10735
Tssr155780 19 29251581 to 29251665 84 + TSS region transcription start site region 155780
Tssr155781 19 29251748 to 29251854 106 + TSS region transcription start site region 155781
Jak2 19 29251828 to 29313080 61252 + protein coding gene Janus kinase 2
Tssr155782 19 29251860 to 29251867 7 + TSS region transcription start site region 155782
Tssr155783 19 29251892 to 29251901 9 + TSS region transcription start site region 155783
Tssr158749 19 29252094 to 29252105 11 - TSS region transcription start site region 158749
Tssr155784 19 29252300 to 29252313 13 + TSS region transcription start site region 155784
Tssr155785 19 29252429 to 29252442 13 + TSS region transcription start site region 155785
Tssr155786 19 29252454 to 29252485 31 + TSS region transcription start site region 155786
Tssr155787 19 29252554 to 29252590 36 + TSS region transcription start site region 155787
Tssr155788 19 29257961 to 29257962 1 + TSS region transcription start site region 155788
Tssr155789 19 29262236 to 29262250 14 + TSS region transcription start site region 155789
Tssr155790 19 29266661 to 29266682 21 + TSS region transcription start site region 155790
Tssr155791 19 29271519 to 29271525 6 + TSS region transcription start site region 155791
Tssr155792 19 29271536 to 29271550 14 + TSS region transcription start site region 155792
Tssr155793 19 29275061 to 29275080 19 + TSS region transcription start site region 155793
Tssr155794 19 29282525 to 29282565 40 + TSS region transcription start site region 155794
Tssr155795 19 29284934 to 29284948 14 + TSS region transcription start site region 155795
Tssr155796 19 29286328 to 29286341 13 + TSS region transcription start site region 155796
Tssr155797 19 29287943 to 29287960 17 + TSS region transcription start site region 155797
Tssr155798 19 29288018 to 29288066 48 + TSS region transcription start site region 155798
Tssr155799 19 29289231 to 29289245 14 + TSS region transcription start site region 155799
Tssr155800 19 29289565 to 29289577 12 + TSS region transcription start site region 155800
Tssr155801 19 29289618 to 29289634 16 + TSS region transcription start site region 155801
Tssr155802 19 29292827 to 29292839 12 + TSS region transcription start site region 155802
Tssr155803 19 29312201 to 29312227 26 + TSS region transcription start site region 155803
Tssr155804 19 29312250 to 29312263 13 + TSS region transcription start site region 155804
Insl6 19 29321354 to 29325318 3964 - protein coding gene insulin-like 6
Tssr158750 19 29325110 to 29325121 11 - TSS region transcription start site region 158750
Cpgi10736 19 29325238 to 29325461 223 CpG island CpG island 10736
Tssr158751 19 29325313 to 29325371 58 - TSS region transcription start site region 158751
Rln1 19 29331755 to 29334670 2915 - protein coding gene relaxin 1
Tssr155805 19 29334397 to 29334407 10 + TSS region transcription start site region 155805
Tssr158752 19 29334646 to 29334652 6 - TSS region transcription start site region 158752
Plgrkt 19 29348599 to 29367336 18737 - protein coding gene plasminogen receptor, C-terminal lysine transmembrane protein
Tssr158753 19 29356438 to 29356441 3 - TSS region transcription start site region 158753