Genes and genomic regions

Find data in MPD that are associated with a particular mouse gene or chromosomal region.


Gene / region search:

  Search gene symbols     Search gene descriptions

Search on a gene symbol or gene name keyword(s).
Or, retrieve using chromosome coordinate ranges in Mbp or bp e.g.   17:44-45   ..or..   X:22500000-23000000

Click here to work with the entire chromosomal region 19:27073838-27783846

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42 genes found.
Gene symbol Chromo-
some		 Coordinates (bp, mm10) Size (bp) Strand Feature Type Gene name
Gm35438 19 27101951 to 27316698 214747 - lncRNA gene predicted gene, 35438
D19Dcr7 19 27202598 to 27202698 100 DNA segment DNA Segment, Chr 19, Derry C. Roopenian 7
Vldlr 19 27216489 to 27254231 37742 + protein coding gene very low density lipoprotein receptor
Cpgi10723 19 27216616 to 27219235 2619 CpG island CpG island 10723
Tssr155729 19 27216881 to 27216891 10 + TSS region transcription start site region 155729
Tssr155730 19 27217011 to 27217042 31 + TSS region transcription start site region 155730
Tssr155731 19 27217047 to 27217056 9 + TSS region transcription start site region 155731
Tssr5469 19 27217069 to 27217077 8 + TSS region transcription start site region 5469
Tssr155732 19 27217101 to 27217131 30 + TSS region transcription start site region 155732
Tssr155733 19 27217406 to 27217424 18 + TSS region transcription start site region 155733
Tssr155734 19 27217509 to 27217605 96 + TSS region transcription start site region 155734
Tssr158703 19 27257415 to 27257418 3 - TSS region transcription start site region 158703
Tssr158704 19 27262264 to 27262273 9 - TSS region transcription start site region 158704
Tssr158705 19 27262297 to 27262306 9 - TSS region transcription start site region 158705
Tssr158706 19 27262317 to 27262328 11 - TSS region transcription start site region 158706
Gm35268 19 27312632 to 27321729 9097 + lncRNA gene predicted gene, 35268
Tssr155735 19 27312894 to 27312904 10 + TSS region transcription start site region 155735
Tssr155736 19 27312970 to 27312975 5 + TSS region transcription start site region 155736
Tssr155737 19 27321759 to 27321763 4 + TSS region transcription start site region 155737
Tssr155738 19 27322518 to 27322532 14 + TSS region transcription start site region 155738
Tssr155739 19 27322539 to 27322592 53 + TSS region transcription start site region 155739
Kcnv2 19 27322588 to 27337179 14591 + protein coding gene potassium channel, subfamily V, member 2
Tssr5470 19 27322600 to 27322601 1 + TSS region transcription start site region 5470
Tssr155740 19 27322609 to 27322617 8 + TSS region transcription start site region 155740
Cpgi10724 19 27323005 to 27324113 1108 CpG island CpG island 10724
Tssr155741 19 27335528 to 27335534 6 + TSS region transcription start site region 155741
Gm35554 19 27344725 to 27356409 11684 + lncRNA gene predicted gene, 35554
Tssr155742 19 27344738 to 27344768 30 + TSS region transcription start site region 155742
Tssr155743 19 27344769 to 27344782 13 + TSS region transcription start site region 155743
Pum3 19 27388702 to 27429820 41118 - protein coding gene pumilio RNA-binding family member 3
Tssr158707 19 27399084 to 27399094 10 - TSS region transcription start site region 158707
Tssr158708 19 27421381 to 27421427 46 - TSS region transcription start site region 158708
Tssr155744 19 27428838 to 27428846 8 + TSS region transcription start site region 155744
Cpgi10725 19 27429455 to 27430326 871 CpG island CpG island 10725
Tssr158709 19 27429807 to 27429870 63 - TSS region transcription start site region 158709
C030016D13Rik 19 27430037 to 27432631 2594 + lncRNA gene RIKEN cDNA C030016D13 gene
Tssr155745 19 27430136 to 27430161 25 + TSS region transcription start site region 155745
Mcsq3 19 27566000 to 31134000 3568000 QTL methacholine sensitivity QTL 3, final
Gm35697 19 27666428 to 27668494 2066 - lncRNA gene predicted gene, 35697
Gm24782 19 27703876 to 27704007 131 - snoRNA gene predicted gene, 24782
Rfx3 19 27761721 to 28011166 249445 - protein coding gene regulatory factor X, 3 (influences HLA class II expression)
Tssr158710 19 27762337 to 27762357 20 - TSS region transcription start site region 158710